Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0032821 Rosa chinensis HOM05D007784 ORTHO05D008654 3.3e-112 408.7 250 100.0
FAN21G3158 Fragaria x ananassa HOM05D007784 ORTHO05D008654 2.7e-90 335.9 250 80.4
FAN25G3654 Fragaria x ananassa HOM05D007784 ORTHO05D008654 7.8e-90 334.3 250 82.8
FvH4_3g19630 Fragaria vesca HOM05D007784 ORTHO05D008654 1.3e-89 333.6 250 80.0
FAN11G2265 Fragaria x ananassa HOM05D007784 ORTHO05D008654 1.3e-89 333.6 250 80.0
FAN16G2579 Fragaria x ananassa HOM05D007784 ORTHO05D008654 6.4e-84 314.7 229 85.2
Prupe.4G177000 Prunus persica HOM05D007784 ORTHO05D008654 1.3e-52 210.7 249 61.8
MD03G1230800 Malus domestica HOM05D007784 ORTHO05D008654 6.7e-49 198.4 255 58.8
Cfa020564 Carpinus fangiana HOM05D007784 ORTHO05D008654 1.4e-43 180.6 236 53.4
COL.COLO4_36703 Corchorus olitorius HOM05D007784 ORTHO05D008654 5.7e-40 168.7 239 51.5
QL08p022546 Quercus lobata HOM05D007784 ORTHO05D008654 2.2e-39 166.8 237 53.6
Duzib268G0159 Durio zibethinus HOM05D007784 ORTHO05D008654 4.8e-39 165.6 237 50.2
Gohir.A01G061700 Gossypium hirsutum HOM05D007784 ORTHO05D008654 5.3e-38 162.2 233 50.2
Gohir.D01G048300 Gossypium hirsutum HOM05D007784 ORTHO05D008654 9.1e-38 161.4 234 50.4
Gorai.002G068100 Gossypium raimondii HOM05D007784 ORTHO05D008654 9.1e-38 161.4 234 50.4
Duzib213G0720 Durio zibethinus HOM05D007784 ORTHO05D008654 1.2e-37 161.0 233 49.4
Thecc.07G095100 Theobroma cacao HOM05D007784 ORTHO05D008654 2.6e-37 159.8 238 49.6
CiPaw.11G171500 Carya illinoinensis HOM05D007784 ORTHO05D008654 1.8e-33 147.1 249 44.2
Cpa.g.c36086 Carica papaya HOM05D007784 ORTHO05D008654 1.5e-32 144.1 247 47.0
Potri.011G116600 Populus trichocarpa HOM05D007784 ORTHO05D008654 5.7e-32 142.1 242 51.7
Ciclev10010505m.g Citrus clementina HOM05D007784 ORTHO05D008654 2.2e-31 140.2 241 45.6
ClCG11G017920 Citrullus lanatus HOM05D007784 ORTHO05D008654 3.7e-31 139.4 254 45.3
PGR031G1623 Punica granatum HOM05D007784 ORTHO05D008654 1.8e-30 137.1 246 47.2
CANSAT56G4083 Cannabis sativa HOM05D007784 ORTHO05D008654 3.1e-30 136.3 266 51.9
MELO3C025600.2 Cucumis melo HOM05D007784 ORTHO05D008654 1.2e-29 134.4 248 52.0
Potri.001G398000 Populus trichocarpa HOM05D007784 ORTHO05D008654 2.0e-29 133.7 244 49.2
CSS0002410 Camellia sinensis var. sinensis HOM05D007784 ORTHO05D008654 2.6e-29 133.3 234 48.3
CiPaw.12G119800 Carya illinoinensis HOM05D007784 ORTHO05D008654 2.6e-29 133.3 239 48.5
Lalb_Chr03g0030731 Lupinus albus HOM05D007784 ORTHO05D008654 5.9e-29 132.1 231 48.9
Atru.chr2.2433 Acer truncatum HOM05D007784 ORTHO05D008654 2.2e-28 130.2 267 43.8
Gohir.D13G151926 Gossypium hirsutum HOM05D007784 ORTHO05D008654 1.1e-27 127.9 237 48.5
Sabra11G0102100 Salix brachista HOM05D007784 ORTHO05D008654 1.5e-27 127.5 242 47.9
Hma1.2p1_0387F.1_g141980 Hydrangea macrophylla HOM05D007784 ORTHO05D008654 1.2e-26 124.4 238 38.7
Manes.15G088900 Manihot esculenta HOM05D007784 ORTHO05D008654 1.2e-26 124.4 252 42.1
Manes.03G106700 Manihot esculenta HOM05D007784 ORTHO05D008654 3.6e-26 122.9 242 45.0
Sabra16G0260800 Salix brachista HOM05D007784 ORTHO05D008654 6.1e-26 122.1 235 47.7
Haze_09448 Corylus avellana HOM05D007784 ORTHO05D008654 2.3e-25 120.2 88 68.2
Cc05_g11830 Coffea canephora HOM05D007784 ORTHO05D008654 3.0e-25 119.8 241 46.9
Lj3g0015921 Lotus japonicus HOM05D007784 ORTHO05D008654 3.0e-25 119.8 234 51.7
CsaV3_4G033550 Cucumis sativus L. HOM05D007784 ORTHO05D008654 3.3e-24 116.3 248 52.8
Ca_23050_v3 Cicer arietinum L. HOM05D007784 ORTHO05D008654 4.1e-22 109.4 227 45.8
Glyma.06G238300 Glycine max HOM05D007784 ORTHO05D008654 5.3e-22 109.0 237 47.7
Oeu051079.1 Olea europaea HOM05D007784 ORTHO05D008654 1.6e-21 107.5 237 46.0
Lalb_Chr01g0006591 Lupinus albus HOM05D007784 ORTHO05D008654 2.7e-21 106.7 231 42.0
Psat4g131560 Pisum sativum HOM05D007784 ORTHO05D008654 2.7e-21 106.7 229 38.0
Glyma.12G163035 Glycine max HOM05D007784 ORTHO05D008654 3.5e-21 106.3 235 48.1
Gorai.013G169700 Gossypium raimondii HOM05D007784 ORTHO05D008654 7.7e-21 105.1 195 50.8
Phvul.011G165000 Phaseolus vulgaris HOM05D007784 ORTHO05D008654 7.7e-21 105.1 245 42.4
VMungo1127G1039 Vigna mungo HOM05D007784 ORTHO05D008654 3.8e-20 102.8 251 39.8
MSTRG.15239 Avicennia marina HOM05D007784 ORTHO05D008654 1.1e-19 101.3 229 43.2
Rhsim06G0201400 Rhododendron simsii HOM05D007784 ORTHO05D008654 1.5e-19 100.9 249 43.0
TWI38G0880 Tripterygium wilfordii HOM05D007784 ORTHO05D008654 3.2e-19 99.8 234 40.6
Actinidia09697 Actinidia chinensis HOM05D007784 ORTHO05D008654 7.2e-19 98.6 239 42.3
Aqoxy1G02344 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 1.6e-18 97.4 211 39.3
Aqoxy5G00008 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 2.1e-18 97.1 211 39.3
Duzib170G0657 Durio zibethinus HOM05D007784 ORTHO05D008654 1.0e-17 94.7 229 39.3
TAR627G0444 Trochodendron aralioides HOM05D007784 ORTHO05D008654 6.8e-17 92.0 262 44.3
Dinv14932 Davidia involucrata HOM05D007784 ORTHO05D008654 1.5e-16 90.9 90 54.4
TAR627G0175 Trochodendron aralioides HOM05D007784 ORTHO05D008654 4.4e-16 89.4 262 40.1
CAN.G162.41 Capsicum annuum HOM05D007784 ORTHO05D008654 9.8e-16 88.2 241 35.7
Medtr0598s0020 Medicago truncatula HOM05D007784 ORTHO05D008654 9.8e-16 88.2 175 47.4
PGR083G0236 Punica granatum HOM05D007784 ORTHO05D008654 9.8e-16 88.2 239 33.9
PGSC0003DMG400012442 Solanum tuberosum HOM05D007784 ORTHO05D008654 3.7e-15 86.3 252 38.5
ECA234G3343 Erigeron canadensis HOM05D007784 ORTHO05D008654 4.8e-15 85.9 226 38.9
PSO541G4378 Papaver somniferum HOM05D007784 ORTHO05D008654 4.8e-15 85.9 241 35.3
Sc16g0007130 Simmondsia chinensis HOM05D007784 ORTHO05D008654 4.8e-15 85.9 250 39.2
Peaxi162Scf00069g01710 Petunia axillaris HOM05D007784 ORTHO05D008654 6.3e-15 85.5 193 36.3
TPR.G18874 Trifolium pratense HOM05D007784 ORTHO05D008654 1.2e-13 81.3 176 38.1
BcaB06g29548 Brassica carinata HOM05D009851 ORTHO05D008654 6.5e-12 75.5 215 40.5
AL3G27640 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 4.2e-11 72.8 219 31.1
THA.LOC104810461 Tarenaya hassleriana HOM05D009851 ORTHO05D008654 5.5e-11 72.4 263 32.7
Solyc07g062960.1 Solanum lycopersicum HOM05D007784 ORTHO05D008654 7.2e-11 72.0 229 37.6
C05p51990 Brassica napus HOM05D009851 ORTHO05D008654 1.2e-10 71.2 205 37.1
Sed0023140 Sechium edule HOM05D007784 ORTHO05D008654 1.2e-10 71.2 58 65.5
CARHR090230 Cardamine hirsuta HOM05D009851 ORTHO05D008654 2.1e-10 70.5 214 32.2
Nn1g04167 Nelumbo nucifera HOM05D007784 ORTHO05D008654 2.1e-10 70.5 260 35.0
Sopen07g031150 Solanum pennellii HOM05D007784 ORTHO05D008654 6.1e-10 68.9 221 38.0
BolC5t33884H Brassica oleracea HOM05D009851 ORTHO05D008654 1.4e-09 67.8 205 37.1
AUR62036175 Chenopodium quinoa HOM05D007784 ORTHO05D008654 1.8e-09 67.4 265 29.1
Thhalv10021913m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 3.0e-09 66.6 218 33.9
Sp3g13450 Schrenkiella parvula HOM05D009851 ORTHO05D008654 3.0e-09 66.6 236 36.9
AL1G61530 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 4.0e-09 66.2 97 45.4
DCAR_017127 Daucus carota HOM05D007784 ORTHO05D008654 4.0e-09 66.2 229 35.4
AT3G15250 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 5.2e-09 65.9 221 30.8
A05p34230 Brassica napus HOM05D009851 ORTHO05D008654 8.8e-09 65.1 205 36.1
BraA05t22243Z Brassica rapa HOM05D009851 ORTHO05D008654 8.8e-09 65.1 205 36.1
SalBow8G3696 Salvia bowleyana HOM05D007784 ORTHO05D008654 8.8e-09 65.1 94 47.9
BcaB06g29549 Brassica carinata HOM05D009851 ORTHO05D008654 1.5e-08 64.3 214 39.3
EL10Ac4g08222 Beta vulgaris HOM05D007784 ORTHO05D008654 2.0e-08 63.9 273 34.8
Migut.M00785 Erythranthe guttata HOM05D007784 ORTHO05D008654 2.0e-08 63.9 81 51.9
BcaB03g11679 Brassica carinata HOM05D009851 ORTHO05D008654 2.6e-08 63.5 67 53.7
Carub.0001s4232 Capsella rubella HOM05D009851 ORTHO05D008654 7.5e-08 62.0 298 28.2
Ah.06g184500 Amaranthus hybridus HOM05D007784 ORTHO05D008654 9.8e-08 61.6 249 31.7
AT1G53163 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 1.3e-07 61.2 95 44.2
Dinv17338 Davidia involucrata HOM05D008668 ORTHO05D010653 1.3e-07 61.2 91 46.2
Carub.0003s1490 Capsella rubella HOM05D009851 ORTHO05D008654 1.7e-07 60.8 216 36.6
CARHR043380 Cardamine hirsuta HOM05D009851 ORTHO05D008654 4.9e-07 59.3 282 27.7
Actinidia12799 Actinidia chinensis HOM05D000223 ORTHO05D000736 8.3e-07 58.5 136 47.1
AUR62019455 Chenopodium quinoa HOM05D007784 ORTHO05D008654 1.1e-06 58.2 280 34.6
BcaC08g43508 Brassica carinata HOM05D009851 ORTHO05D008654 1.4e-06 57.8 277 28.5
C06p08940 Brassica napus HOM05D009851 ORTHO05D008654 1.4e-06 57.8 277 28.5
BolC6t35972H Brassica oleracea HOM05D009851 ORTHO05D008654 1.4e-06 57.8 277 28.5
A06p01160 Brassica napus HOM05D009851 ORTHO05D008654 3.1e-06 56.6 278 27.7
Nn1g06458 Nelumbo nucifera HOM05D007784 ORTHO05D008654 3.1e-06 56.6 197 33.5
Thhalv10012165m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 7.0e-06 55.5 281 29.5


User provided reference genes

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