Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 8.2e-121 437.2 238 100.0
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 7.4e-106 387.5 238 90.3
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 1.3e-105 386.7 238 89.5
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.2e-103 380.2 238 89.1
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 3.9e-99 365.2 238 84.9
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 3.5e-79 298.9 238 65.5
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 1.0e-78 297.4 238 67.2
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 6.6e-70 268.1 238 63.4
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 4.2e-69 265.4 239 60.7
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 4.7e-68 261.9 238 55.5
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 1.0e-67 260.8 238 62.6
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 2.0e-66 256.5 238 55.5
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 4.4e-66 255.4 238 56.7
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 1.3e-65 253.8 241 56.4
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 2.2e-65 253.1 233 54.9
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 3.7e-65 252.3 241 56.0
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 8.3e-65 251.1 238 55.9
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 1.1e-64 250.8 247 56.7
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 1.8e-64 250.0 238 55.5
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 1.8e-64 250.0 242 52.9
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 1.8e-64 250.0 235 61.7
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 3.1e-64 249.2 235 60.4
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 4.1e-64 248.8 242 55.0
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 5.4e-64 248.4 237 56.5
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 1.2e-63 247.3 238 54.2
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 1.6e-63 246.9 242 54.1
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 2.7e-63 246.1 235 59.1
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 7.8e-63 244.6 235 55.7
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 3.8e-62 242.3 235 60.0
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 5.0e-62 241.9 235 51.5
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 5.0e-62 241.9 236 53.4
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 6.6e-62 241.5 237 54.4
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 1.1e-61 240.7 239 54.4
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 4.3e-61 238.8 240 57.1
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 5.6e-61 238.4 240 56.7
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 9.5e-61 237.7 238 53.8
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 2.1e-60 236.5 237 53.6
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 2.1e-60 236.5 240 56.7
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 2.8e-60 236.1 241 56.4
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 3.6e-60 235.7 241 54.4
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 4.7e-60 235.3 232 53.9
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 4.7e-60 235.3 238 56.7
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 4.7e-60 235.3 235 52.8
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 1.0e-59 234.2 238 55.0
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 1.0e-59 234.2 235 58.3
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 1.4e-59 233.8 241 55.2
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 1.8e-59 233.4 242 54.5
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 2.3e-59 233.0 242 50.4
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 3.1e-59 232.6 243 54.7
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 4.0e-59 232.3 242 54.1
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 5.2e-59 231.9 241 54.8
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 5.2e-59 231.9 242 53.7
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 6.8e-59 231.5 242 53.7
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 8.9e-59 231.1 240 50.8
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.2e-58 230.7 239 50.2
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 1.5e-58 230.3 238 51.3
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 1.5e-58 230.3 235 50.6
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 2.0e-58 229.9 241 54.4
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 3.4e-58 229.2 237 54.4
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 3.4e-58 229.2 243 56.0
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 3.4e-58 229.2 248 48.8
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 3.4e-58 229.2 259 54.4
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 1.7e-57 226.9 243 53.9
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 2.2e-57 226.5 252 54.0
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 2.2e-57 226.5 243 53.1
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 2.9e-57 226.1 257 49.4
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 6.4e-57 224.9 238 56.3
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 6.4e-57 224.9 238 54.6
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 6.4e-57 224.9 244 54.1
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 8.3e-57 224.6 245 50.6
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 1.4e-56 223.8 235 53.6
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 2.4e-56 223.0 241 49.8
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 7.0e-56 221.5 245 50.2
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 7.0e-56 221.5 244 50.4
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 9.2e-56 221.1 237 53.2
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 9.2e-56 221.1 239 49.8
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 1.2e-55 220.7 257 52.9
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 1.6e-55 220.3 241 54.4
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 2.0e-55 219.9 235 53.6
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 7.8e-55 218.0 233 54.5
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 3.9e-54 215.7 234 55.1
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 8.6e-54 214.5 251 51.8
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.1e-53 214.2 258 52.7
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 1.1e-53 214.2 237 52.3
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 1.5e-53 213.8 230 48.7
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 3.3e-53 212.6 221 53.8
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.8e-52 209.5 234 55.1
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 1.5e-50 203.8 237 51.5
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 2.6e-50 203.0 240 46.2
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 6.4e-49 198.4 351 41.0
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 2.5e-45 186.4 263 46.4
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 4.0e-43 179.1 224 45.1
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.5e-42 177.2 234 50.0
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 2.6e-42 176.4 224 45.5
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 2.6e-42 176.4 205 44.4
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 2.9e-41 172.9 187 54.5
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 2.9e-41 172.9 232 40.5
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 3.7e-41 172.6 232 40.5
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 4.1e-40 169.1 229 41.5
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 1.0e-38 164.5 224 40.2
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 3.0e-38 162.9 232 38.8
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 1.6e-36 157.1 231 41.1
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 3.6e-36 156.0 234 38.5
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 3.6e-36 156.0 234 38.5
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 1.8e-35 153.7 243 38.7
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 1.7e-33 147.1 168 43.5
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 6.4e-33 145.2 240 39.6
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 3.2e-32 142.9 205 38.5
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 1.2e-31 141.0 168 42.3
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 1.2e-31 141.0 168 42.3
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 4.3e-29 132.5 226 33.6
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 9.0e-27 124.8 145 52.4
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 9.0e-27 124.8 238 33.6
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 5.8e-26 122.1 234 42.3
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 4.9e-25 119.0 133 53.4
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 6.4e-25 118.6 116 54.3
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 1.1e-24 117.9 215 42.8
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 7.1e-24 115.2 228 32.5
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 3.9e-22 109.4 126 49.2
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 1.1e-19 101.3 234 31.6
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 4.5e-18 95.9 88 53.4
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 1.7e-17 94.0 166 39.8
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 6.4e-17 92.0 128 43.8
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 7.9e-15 85.1 118 41.5
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 8.7e-14 81.6 150 37.3
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 9.6e-13 78.2 118 41.5
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 9.6e-13 78.2 118 41.5
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 1.6e-12 77.4 118 40.7
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 8.1e-12 75.1 118 40.7
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 8.1e-12 75.1 118 40.7
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 3.4e-10 69.7 125 35.2
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 3.8e-09 66.2 54 50.0
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 1.1e-08 64.7 200 30.0
CBR_g39602 Chara braunii HOM05D005295 ORTHO05D005962 1.2e-07 61.2 285 24.2
AagrBONN_evm.TU.Sc2ySwM_117.1842 Anthoceros agrestis HOM05D005295 ORTHO05D005962 6.0e-07 58.9 97 35.1


User provided reference genes

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