Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 4.3e-93 344.7 184 100.0
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 3.0e-86 322.0 184 95.7
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 3.0e-86 322.0 184 95.7
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 3.3e-85 318.5 184 94.6
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 4.3e-85 318.2 184 94.0
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 1.5e-66 256.5 184 80.4
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 2.6e-66 255.8 188 79.8
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 3.5e-63 245.4 169 82.2
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 2.1e-60 236.1 181 72.9
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 1.1e-59 233.8 182 74.2
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 1.8e-59 233.0 175 74.3
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 9.0e-59 230.7 180 72.8
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 4.4e-58 228.4 174 75.3
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 7.6e-58 227.6 179 70.4
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 2.2e-57 226.1 171 75.4
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 6.4e-57 224.6 183 73.8
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 6.4e-57 224.6 173 72.8
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 1.1e-56 223.8 179 68.7
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.4e-56 223.4 177 72.3
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 3.2e-56 222.2 179 69.3
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 5.4e-56 221.5 177 70.1
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 5.4e-56 221.5 177 70.1
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 7.1e-56 221.1 168 75.0
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.2e-55 220.3 182 68.7
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 1.2e-55 220.3 182 68.7
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 2.1e-55 219.5 171 71.9
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 2.7e-55 219.2 185 68.6
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 3.5e-55 218.8 182 70.9
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 3.5e-55 218.8 183 67.8
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 6.0e-55 218.0 173 73.4
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 1.3e-54 216.9 184 68.5
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 1.7e-54 216.5 177 69.5
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 2.3e-54 216.1 176 70.5
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 2.3e-54 216.1 175 70.9
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 5.1e-54 214.9 179 69.8
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 1.5e-53 213.4 141 82.3
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 1.5e-53 213.4 189 68.3
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 2.5e-53 212.6 181 70.7
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 3.3e-53 212.2 176 68.2
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 1.6e-52 209.9 181 70.2
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 2.1e-52 209.5 187 65.8
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 2.1e-52 209.5 171 73.7
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 4.8e-52 208.4 178 71.3
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 6.2e-52 208.0 186 65.1
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 1.1e-51 207.2 175 69.7
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 1.8e-51 206.5 176 69.9
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 5.3e-51 204.9 172 70.9
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 3.4e-50 202.2 183 64.5
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 5.8e-50 201.4 173 69.9
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 7.6e-50 201.1 175 68.0
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.3e-49 200.3 171 69.6
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.3e-49 200.3 171 69.6
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 1.3e-49 200.3 149 75.8
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 1.7e-49 199.9 178 66.3
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 1.4e-48 196.8 193 64.8
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 2.4e-48 196.1 149 72.5
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 9.3e-48 194.1 177 66.7
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 1.6e-47 193.4 189 62.4
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 3.5e-47 192.2 185 64.3
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 4.6e-47 191.8 186 64.0
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 6.0e-47 191.4 176 66.5
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 6.0e-47 191.4 198 62.1
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 7.9e-47 191.0 186 63.4
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 7.9e-47 191.0 179 67.0
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.8e-46 189.9 196 61.2
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 2.3e-46 189.5 184 62.0
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 2.3e-46 189.5 196 60.7
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 2.3e-46 189.5 196 60.7
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 2.3e-46 189.5 177 63.8
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 6.7e-46 188.0 173 65.9
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 8.7e-46 187.6 222 56.8
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 1.1e-45 187.2 181 61.9
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 1.5e-45 186.8 180 65.0
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 1.9e-45 186.4 184 63.0
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 1.9e-45 186.4 184 63.0
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 4.3e-45 185.3 129 79.1
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 5.6e-45 184.9 168 64.9
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 9.6e-45 184.1 187 63.1
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 9.6e-45 184.1 190 61.1
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 1.3e-44 183.7 187 63.1
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 1.3e-44 183.7 192 60.9
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 1.6e-44 183.3 190 60.5
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 1.6e-44 183.3 184 60.3
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 1.6e-44 183.3 185 58.4
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 3.7e-44 182.2 186 62.4
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 4.8e-44 181.8 184 58.7
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 6.2e-44 181.4 188 59.6
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 6.2e-44 181.4 185 63.2
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 6.2e-44 181.4 187 62.0
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 8.1e-44 181.0 180 61.7
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 8.1e-44 181.0 175 62.9
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 8.1e-44 181.0 171 63.7
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 1.1e-43 180.6 172 66.3
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 1.4e-43 180.3 201 59.7
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 1.4e-43 180.3 181 59.1
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 1.8e-43 179.9 176 62.5
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 9.0e-43 177.6 184 59.2
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 1.2e-42 177.2 177 57.6
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 3.4e-42 175.6 183 59.6
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 4.5e-42 175.3 170 60.6
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 3.8e-41 172.2 179 63.7
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 1.1e-40 170.6 115 78.3
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 1.1e-40 170.6 115 78.3
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 1.1e-40 170.6 115 78.3
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 5.5e-40 168.3 114 79.8
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 4.6e-39 165.2 118 80.5
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 6.0e-39 164.9 130 70.0
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 1.8e-38 163.3 267 45.3
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 1.8e-35 153.3 173 57.2
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 5.5e-32 141.7 180 55.0
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 3.9e-30 135.6 119 66.4
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 8.7e-30 134.4 167 54.5
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 4.3e-29 132.1 176 51.1
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 3.7e-28 129.0 116 60.3
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 8.2e-28 127.9 119 61.3
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 2.4e-27 126.3 177 48.6
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 4.1e-27 125.6 345 34.2
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 2.6e-26 122.9 144 57.6
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 1.7e-25 120.2 183 49.2
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 2.7e-23 112.8 166 47.0
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 3.9e-22 109.0 107 61.7
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 6.7e-22 108.2 77 70.1
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 1.7e-17 93.6 78 62.8
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 1.9e-16 90.1 107 52.3
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 7.2e-16 88.2 66 72.7
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 6.1e-15 85.1 106 57.5
MCO10G118 Micromonas commoda HOM05D006014 ORTHO05D007608 2.2e-12 76.6 91 48.4
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 3.8e-09 65.9 53 71.7
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 6.5e-09 65.1 109 47.7
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 1.1e-08 64.3 80 51.2
MD16G1275000 Malus domestica HOM05D000404 ORTHO05D002003 8.8e-06 54.7 35 88.6


User provided reference genes

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