Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0032701 Rosa chinensis HOM05D005607 ORTHO05D008142 1.3e-288 995.7 524 100.0
FvH4_3g19420 Fragaria vesca HOM05D005607 ORTHO05D008142 1.6e-262 909.1 524 90.8
FAN16G0865 Fragaria x ananassa HOM05D005607 ORTHO05D008142 6.6e-256 887.1 538 87.9
Prupe.4G175900 Prunus persica HOM05D005607 ORTHO05D008142 9.5e-231 803.5 524 80.2
MD03G1232700 Malus domestica HOM05D005607 ORTHO05D008142 2.4e-226 788.9 524 79.2
Cfa020607 Carpinus fangiana HOM05D005607 ORTHO05D008142 2.7e-201 705.7 527 71.9
CiPaw.11G167700 Carya illinoinensis HOM05D005607 ORTHO05D008142 1.1e-199 700.3 527 71.2
GSVIVG01014288001 Vitis vinifera HOM05D005607 ORTHO05D008142 3.3e-199 698.7 525 70.7
Thecc.07G096400 Theobroma cacao HOM05D005607 ORTHO05D008142 7.4e-199 697.6 527 71.0
COL.COLO4_36717 Corchorus olitorius HOM05D005607 ORTHO05D008142 8.1e-198 694.1 527 69.8
MD11G1253400 Malus domestica HOM05D005607 ORTHO05D008142 9.0e-197 690.6 463 78.8
CSS0008326 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 1.7e-195 686.4 527 70.0
TWI38G0301 Tripterygium wilfordii HOM05D005607 ORTHO05D008142 3.9e-192 675.2 527 67.7
Ciclev10007885m.g Citrus clementina HOM05D005607 ORTHO05D008142 1.5e-191 673.3 527 68.9
Potri.001G396500 Populus trichocarpa HOM05D005607 ORTHO05D008142 1.9e-191 672.9 527 69.3
Gohir.A04G035700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 4.3e-191 671.8 527 68.1
Gohir.D05G347700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 4.3e-191 671.8 527 68.1
Gorai.009G375500 Gossypium raimondii HOM05D005607 ORTHO05D008142 5.7e-191 671.4 527 68.3
Eucgr.F01169 Eucalyptus grandis HOM05D005607 ORTHO05D008142 2.8e-190 669.1 527 67.6
CANSAT35G0745 Cannabis sativa HOM05D005607 ORTHO05D008142 3.7e-190 668.7 524 67.7
Glyma.06G236100 Glycine max HOM05D005607 ORTHO05D008142 4.8e-190 668.3 526 67.1
Manes.03G105800 Manihot esculenta HOM05D005607 ORTHO05D008142 4.1e-189 665.2 527 67.6
Dinv20204 Davidia involucrata HOM05D005607 ORTHO05D008142 1.2e-188 663.7 527 68.5
Lj3g0025006 Lotus japonicus HOM05D005607 ORTHO05D008142 1.2e-188 663.7 524 66.8
Sabra16G0259600 Salix brachista HOM05D005607 ORTHO05D008142 7.6e-188 661.0 528 68.0
Duzib213G0871 Durio zibethinus HOM05D005607 ORTHO05D008142 1.0e-187 660.6 498 71.3
arahy.Tifrunner.gnm1.ann1.K8QLTQ Arachis hypogaea HOM05D005607 ORTHO05D008142 6.5e-187 657.9 530 67.4
Cpa.g.sc131.86 Carica papaya HOM05D005607 ORTHO05D008142 1.1e-186 657.1 527 66.0
MELO3C025610.2 Cucumis melo HOM05D005607 ORTHO05D008142 1.4e-186 656.8 525 65.7
CsaV3_4G033450 Cucumis sativus L. HOM05D005607 ORTHO05D008142 1.9e-186 656.4 525 65.9
Lalb_Chr19g0134061 Lupinus albus HOM05D005607 ORTHO05D008142 4.2e-186 655.2 525 66.7
Sed0013999 Sechium edule HOM05D005607 ORTHO05D008142 7.2e-186 654.4 525 65.3
ClCG11G017810 Citrullus lanatus HOM05D005607 ORTHO05D008142 1.2e-185 653.7 539 65.1
arahy.Tifrunner.gnm1.ann1.3D346W Arachis hypogaea HOM05D005607 ORTHO05D008142 4.6e-185 651.7 530 66.6
Ca_23036_v3 Cicer arietinum L. HOM05D005607 ORTHO05D008142 1.0e-184 650.6 524 66.6
Actinidia31524 Actinidia chinensis HOM05D005607 ORTHO05D008142 6.7e-184 647.9 527 66.6
PGR083G1887 Punica granatum HOM05D005607 ORTHO05D008142 2.5e-183 646.0 527 67.2
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 2.2e-182 642.9 569 63.8
Cc05_g11730 Coffea canephora HOM05D005607 ORTHO05D008142 3.1e-181 639.0 526 65.2
Rhsim06G0202700 Rhododendron simsii HOM05D005607 ORTHO05D008142 1.2e-180 637.1 542 64.6
Medtr8g058790 Medicago truncatula HOM05D005607 ORTHO05D008142 2.6e-180 636.0 520 66.0
Medtr8g061280 Medicago truncatula HOM05D005607 ORTHO05D008142 2.6e-180 636.0 520 66.0
Atru.chr2.2407 Acer truncatum HOM05D005607 ORTHO05D008142 4.5e-180 635.2 527 66.4
TPR.G28174 Trifolium pratense HOM05D005607 ORTHO05D008142 1.3e-179 633.6 525 65.5
MSTRG.12893 Avicennia marina HOM05D005607 ORTHO05D008142 2.1e-177 626.3 526 63.7
Nitab4.5_0008275g0010 Nicotiana tabacum HOM05D005607 ORTHO05D008142 2.1e-177 626.3 526 63.1
vmacro11890 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 3.6e-177 625.5 551 61.9
vmacro23190 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 4.6e-177 625.2 551 61.9
CSS0003695 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 6.1e-177 624.8 539 64.9
Nitab4.5_0002330g0110 Nicotiana tabacum HOM05D005607 ORTHO05D008142 1.8e-176 623.2 526 62.9
CAN.G162.36 Capsicum annuum HOM05D005607 ORTHO05D008142 1.7e-174 616.7 526 62.5
Nn1g04204 Nelumbo nucifera HOM05D005607 ORTHO05D008142 1.7e-174 616.7 525 64.6
Sc16g0007180 Simmondsia chinensis HOM05D005607 ORTHO05D008142 1.1e-173 614.0 527 62.2
THA.LOC104815562 Tarenaya hassleriana HOM05D005607 ORTHO05D008142 4.5e-172 608.6 527 62.6
PSO210G5410 Papaver somniferum HOM05D005607 ORTHO05D008142 2.5e-170 602.8 526 62.7
PSO832G0774 Papaver somniferum HOM05D005607 ORTHO05D008142 4.2e-170 602.1 526 62.4
Sopen07g031060 Solanum pennellii HOM05D005607 ORTHO05D008142 2.1e-169 599.7 526 61.0
DCAR_017123 Daucus carota HOM05D005607 ORTHO05D008142 1.8e-168 596.7 563 59.7
Eucgr.F01141 Eucalyptus grandis HOM05D005607 ORTHO05D008142 3.0e-168 595.9 527 62.2
HanXRQChr15g0495421 Helianthus annuus HOM05D005607 ORTHO05D008142 8.8e-168 594.3 528 60.4
Oeu005401.4 Olea europaea HOM05D005607 ORTHO05D008142 2.2e-166 589.7 644 53.3
Sp3g13390 Schrenkiella parvula HOM05D005607 ORTHO05D008142 5.9e-164 581.6 526 59.9
AT3G15180 Arabidopsis thaliana HOM05D005607 ORTHO05D008142 1.7e-163 580.1 521 60.3
Lsat_1_v5_gn_7_104480 Lactuca sativa HOM05D005607 ORTHO05D008142 1.7e-163 580.1 529 59.5
VMungo1127G0827 Vigna mungo HOM05D005607 ORTHO05D008142 2.2e-163 579.7 524 60.9
AL3G27570 Arabidopsis lyrata HOM05D005607 ORTHO05D008142 1.9e-162 576.6 521 60.3
Carub.0003s1483 Capsella rubella HOM05D005607 ORTHO05D008142 4.0e-160 568.9 521 59.3
BraA05t22250Z Brassica rapa HOM05D005607 ORTHO05D008142 2.0e-159 566.6 521 59.3
Thhalv10020515m.g Eutrema salsugineum HOM05D005607 ORTHO05D008142 2.0e-159 566.6 521 58.5
ECA236G2999 Erigeron canadensis HOM05D005607 ORTHO05D008142 2.6e-159 566.2 528 58.5
Eucgr.F00890 Eucalyptus grandis HOM05D005607 ORTHO05D008142 4.8e-158 562.0 527 59.0
Duzib170G0139 Durio zibethinus HOM05D005607 ORTHO05D008142 7.0e-157 558.1 526 61.2
Aa31LG8G2380 Aethionema arabicum HOM05D005607 ORTHO05D008142 2.0e-156 556.6 532 57.9
BolC5t33890H Brassica oleracea HOM05D005607 ORTHO05D008142 2.0e-156 556.6 535 57.4
C05p52050 Brassica napus HOM05D005607 ORTHO05D008142 5.9e-156 555.1 547 56.5
A05p34290 Brassica napus HOM05D005607 ORTHO05D008142 1.7e-155 553.5 548 56.6
SGA_v2.0_scaffold130G34350 Striga asiatica HOM05D005607 ORTHO05D008142 4.0e-152 542.3 570 53.5
Aqoxy4G00691 Aquilegia oxysepala HOM05D005607 ORTHO05D008142 4.4e-151 538.9 468 61.8
BcaB06g29542 Brassica carinata HOM05D005607 ORTHO05D008142 2.2e-150 536.6 521 57.2
EL10Ac4g08241 Beta vulgaris HOM05D005607 ORTHO05D008142 3.1e-149 532.7 518 57.5
CDE10G0361 Ceratophyllum demersum HOM05D005607 ORTHO05D008142 2.7e-148 529.6 527 55.0
Ah.06g184600 Amaranthus hybridus HOM05D005607 ORTHO05D008142 1.7e-147 526.9 526 56.8
ATR0737G117 Amborella trichopoda HOM05D005607 ORTHO05D008142 1.9e-146 523.5 521 56.2
Migut.H01958 Erythranthe guttata HOM05D005607 ORTHO05D008142 1.4e-141 507.3 446 59.4
Phvul.011G160300 Phaseolus vulgaris HOM05D005607 ORTHO05D008142 3.1e-141 506.1 451 61.6
Os05g0557200 Oryza sativa ssp. japonica HOM05D005607 ORTHO05D008142 8.0e-137 491.5 515 50.3
Zm00001eb295460 Zea mays HOM05D005607 ORTHO05D008142 3.0e-136 489.6 527 49.1
Psat7g207160 Pisum sativum HOM05D005607 ORTHO05D008142 1.5e-135 487.3 423 64.1
Lj1A839T37 Lonicera japonica HOM05D005607 ORTHO05D008142 1.5e-130 470.7 389 65.6
Hund02235 Selenicereus undatus HOM05D005607 ORTHO05D008142 4.3e-122 442.6 406 59.4
Lj1A839T35 Lonicera japonica HOM05D005607 ORTHO05D008142 9.9e-119 431.4 407 60.0
AUR62019473 Chenopodium quinoa HOM05D005607 ORTHO05D008142 7.3e-106 388.7 554 44.9
FAN11G3919 Fragaria x ananassa HOM05D005607 ORTHO05D008142 2.1e-105 387.1 268 79.9
AUR62036159 Chenopodium quinoa HOM05D005607 ORTHO05D008142 6.2e-105 385.6 524 46.0
Peaxi162Scf00069g01839 Petunia axillaris HOM05D005607 ORTHO05D008142 1.7e-99 367.5 329 60.8
Solyc07g062860.3 Solanum lycopersicum HOM05D005607 ORTHO05D008142 3.2e-93 346.7 329 58.1
SalBow7G3213 Salvia bowleyana HOM05D005607 ORTHO05D008142 5.1e-91 339.3 290 62.1
SalBow7G3521 Salvia bowleyana HOM05D005607 ORTHO05D008142 5.1e-91 339.3 290 62.1
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 1.5e-90 337.8 377 50.7
AagrBONN_evm.TU.Sc2ySwM_344.1287 Anthoceros agrestis HOM05D005607 ORTHO05D008142 2.7e-84 317.0 515 39.0
MD11G1279000 Malus domestica HOM05D005607 ORTHO05D008142 3.5e-84 316.6 286 64.7
Pp3c1_12630 Physcomitrium patens HOM05D005607 ORTHO05D008142 3.7e-81 306.6 544 36.4
QL08p023973 Quercus lobata HOM05D005607 ORTHO05D008142 8.4e-78 295.4 195 76.4
MBI06_g04182_MAGBIO Magnolia biondii HOM05D005607 ORTHO05D008142 1.1e-77 295.0 378 49.5
SMO139G0024 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 6.0e-76 289.3 520 36.3
QL08p023962 Quercus lobata HOM05D005607 ORTHO05D008142 6.9e-72 275.8 241 64.3
Glyma.12G162201 Glycine max HOM05D005607 ORTHO05D008142 5.9e-63 246.1 172 71.5
Peaxi162Scf00069g01838 Petunia axillaris HOM05D005607 ORTHO05D008142 6.3e-57 226.1 163 69.3
PGSC0003DMG400012404 Solanum tuberosum HOM05D005607 ORTHO05D008142 8.5e-54 215.7 183 60.1
CARHR090160 Cardamine hirsuta HOM05D005607 ORTHO05D008142 5.7e-50 203.0 229 52.8
SMO145G0057 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 5.3e-48 196.4 487 31.4
FAN25G1444 Fragaria x ananassa HOM05D005607 ORTHO05D008142 7.7e-47 192.6 112 88.4
CBR_g2884 Chara braunii HOM05D005607 ORTHO05D008142 1.1e-40 172.2 290 39.7
QL08p023949 Quercus lobata HOM05D005607 ORTHO05D008142 3.8e-38 163.7 103 78.6
SEGI_34734 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 9.5e-29 132.5 126 53.2
SEGI_17376 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 1.3e-22 112.1 144 42.4
EL10Ac6g14983 Beta vulgaris HOM05D005607 ORTHO05D008142 3.3e-21 107.5 101 57.4
MELO3C033904.2 Cucumis melo HOM05D005607 ORTHO05D008142 7.0e-16 89.7 88 53.4
RcHm_v2.0_Chr1g0340011 Rosa chinensis HOM05D005607 ORTHO05D008142 4.7e-12 77.0 69 63.8
RcHm_v2.0_Chr1g0357081 Rosa chinensis HOM05D005607 ORTHO05D340723 1.5e-10 72.0 55 70.9
Cre05.g246300 Chlamydomonas reinhardtii HOM05D005607 ORTHO05D008142 8.3e-09 66.2 241 25.7
SEGI_12563 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 4.6e-07 60.5 68 50.0
HanXRQChr10g0304121 Helianthus annuus HOM05D005607 ORTHO05D008142 1.7e-06 58.5 64 60.9


User provided reference genes

Program Settings