Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 1.7e-149 532.7 286 100.0
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 6.3e-136 487.6 289 91.0
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 5.4e-135 484.6 289 90.3
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 2.2e-133 479.2 289 90.3
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.2e-132 475.3 291 89.0
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 4.7e-131 471.5 287 88.5
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 1.7e-93 346.7 291 71.5
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 1.4e-79 300.4 290 63.8
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 7.9e-78 294.7 225 76.0
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 3.1e-74 282.7 295 61.0
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 1.2e-73 280.8 294 59.5
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 1.2e-73 280.8 290 59.0
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 1.5e-73 280.4 297 59.9
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 4.5e-73 278.9 288 61.1
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 6.4e-72 275.0 296 57.4
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 1.1e-71 274.2 262 64.1
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 2.4e-71 273.1 288 59.4
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 3.2e-71 272.7 292 57.5
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 2.1e-70 270.0 262 63.7
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 3.5e-70 269.2 294 57.5
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 4.6e-70 268.9 293 59.4
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 1.3e-69 267.3 294 59.2
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 1.8e-69 266.9 263 63.1
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 3.0e-69 266.2 291 59.8
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 5.1e-69 265.4 205 74.1
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 8.7e-69 264.6 287 58.2
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 8.7e-69 264.6 297 57.9
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.5e-68 263.8 294 57.1
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 2.5e-68 263.1 293 57.7
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 2.1e-67 260.0 295 56.6
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 1.1e-66 257.7 290 58.3
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 2.4e-66 256.5 263 59.3
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 4.0e-66 255.8 294 56.5
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 5.3e-66 255.4 306 55.6
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 5.3e-66 255.4 293 58.7
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 9.0e-66 254.6 293 58.7
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 2.0e-65 253.4 293 58.4
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 1.0e-64 251.1 294 56.8
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 1.3e-64 250.8 294 56.1
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 1.7e-64 250.4 278 55.0
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 2.9e-64 249.6 286 54.9
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 9.3e-63 244.6 212 67.5
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 2.1e-62 243.4 292 54.8
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 2.1e-62 243.4 217 66.8
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 2.1e-62 243.4 280 58.2
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 4.6e-62 242.3 282 54.3
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 6.0e-62 241.9 225 64.0
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 7.9e-62 241.5 285 53.3
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 1.3e-61 240.7 281 55.5
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 1.8e-61 240.4 251 61.4
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 6.7e-61 238.4 285 55.4
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 1.5e-60 237.3 294 54.4
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 1.5e-60 237.3 281 55.5
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 2.5e-60 236.5 296 56.1
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 1.3e-59 234.2 290 51.4
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 6.3e-59 231.9 293 53.6
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 6.3e-59 231.9 304 54.6
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 6.3e-59 231.9 277 53.1
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 8.2e-59 231.5 279 53.4
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 1.1e-58 231.1 291 51.2
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 1.4e-58 230.7 245 56.7
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 2.4e-58 229.9 303 52.5
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 3.1e-58 229.6 308 50.3
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 4.1e-58 229.2 284 54.6
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 5.3e-58 228.8 283 56.2
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 9.0e-58 228.0 293 54.3
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 1.5e-57 227.3 291 50.5
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 1.5e-57 227.3 291 50.5
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 1.5e-57 227.3 291 50.5
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 3.4e-57 226.1 270 53.3
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 3.4e-57 226.1 291 50.9
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 7.6e-57 224.9 331 48.6
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 1.3e-56 224.2 291 51.5
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 2.2e-56 223.4 238 54.2
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 2.2e-56 223.4 273 52.4
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 2.9e-56 223.0 260 55.8
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 5.0e-56 222.2 268 54.5
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 6.5e-56 221.9 280 52.1
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 1.4e-55 220.7 218 60.6
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.4e-55 220.7 289 53.6
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.4e-55 220.7 289 53.6
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 9.3e-55 218.0 215 60.0
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 1.2e-54 217.6 284 52.1
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 7.9e-54 214.9 290 51.0
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 5.1e-53 212.2 261 54.0
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 7.4e-52 208.4 287 51.2
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 8.2e-51 204.9 267 52.8
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 5.3e-50 202.2 275 48.7
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 1.2e-49 201.1 202 59.9
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 1.2e-49 201.1 284 49.6
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 1.2e-49 201.1 284 49.6
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 1.5e-49 200.7 263 51.7
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 2.6e-49 199.9 276 51.8
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 5.0e-48 195.7 285 48.4
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.4e-47 194.1 277 48.4
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.5e-47 193.4 289 46.7
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.1e-46 190.3 288 47.2
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 1.8e-45 187.2 294 46.3
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 1.7e-43 180.6 198 59.1
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 3.4e-41 172.9 299 43.8
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 5.9e-41 172.2 285 46.7
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 5.9e-41 172.2 279 43.0
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 3.8e-40 169.5 154 63.0
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 9.4e-39 164.9 203 54.2
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 3.3e-36 156.4 281 42.7
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 3.1e-34 149.8 285 38.9
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 1.2e-33 147.9 293 38.6
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 6.5e-32 142.1 142 60.6
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 8.0e-30 135.2 214 45.8
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 2.3e-29 133.7 148 56.8
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 6.7e-29 132.1 198 42.4
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 8.8e-29 131.7 192 43.8
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 1.3e-27 127.9 102 68.6
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 2.2e-27 127.1 132 62.1
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 4.8e-27 125.9 164 51.2
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 4.8e-27 125.9 164 51.2
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 1.9e-23 114.0 143 53.1
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 2.5e-23 113.6 207 39.6
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 3.2e-23 113.2 231 38.5
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 8.0e-22 108.6 125 55.2
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 1.8e-21 107.5 157 47.1
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 1.2e-20 104.8 143 46.2
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 2.6e-20 103.6 187 42.8
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 1.8e-18 97.4 74 74.3
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 2.4e-18 97.1 70 75.7
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 7.0e-18 95.5 223 38.1
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 5.9e-17 92.4 194 37.6
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 8.0e-14 82.0 173 32.9
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 2.3e-13 80.5 118 50.0
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 6.3e-11 72.4 60 70.0
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 1.2e-09 68.2 173 28.3
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 2.9e-08 63.5 38 81.6
CARHR090070 Cardamine hirsuta HOM05D005433 ORTHO05D006675 4.3e-07 59.7 75 48.0
TAR629G0034 Trochodendron aralioides HOM05D005433 ORTHO05D006675 1.2e-06 58.2 81 51.9
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 3.6e-06 56.6 43 72.1


User provided reference genes

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