Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 0.0e+00 1256.5 739 100.0
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 4.4e-298 1027.7 753 80.2
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.1e-293 1013.1 750 79.6
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.3e-286 989.6 753 78.8
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.2e-281 972.2 748 76.2
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.0e-275 951.4 752 78.1
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 4.0e-190 669.1 792 56.7
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 2.9e-169 599.7 798 54.5
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 5.2e-166 589.0 794 55.4
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 9.9e-141 505.0 776 55.3
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 1.5e-136 491.1 775 52.5
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 2.4e-134 483.8 788 49.1
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 1.5e-133 481.1 813 51.5
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 1.7e-132 477.6 768 46.9
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 3.8e-132 476.5 790 46.7
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 9.0e-126 455.3 813 45.8
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 3.8e-124 449.9 779 45.6
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 7.1e-123 445.7 746 47.3
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 2.7e-122 443.7 792 47.3
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.5e-122 443.4 777 52.0
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 6.0e-122 442.6 746 46.6
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 1.1e-120 438.3 795 44.5
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 9.0e-118 428.7 782 45.1
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.5e-117 426.4 763 44.4
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 4.5e-117 426.4 796 42.6
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 1.7e-116 424.5 792 45.2
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 1.7e-116 424.5 765 48.6
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.4e-115 421.4 773 43.5
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 7.9e-114 415.6 752 43.5
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 7.9e-114 415.6 773 45.7
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 3.0e-113 413.7 768 50.0
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 3.9e-113 413.3 794 47.9
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 1.5e-112 411.4 771 47.3
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 3.3e-112 410.2 803 45.0
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 9.6e-112 408.7 778 44.1
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.1e-110 403.3 769 46.7
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 6.9e-110 402.5 810 42.0
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 6.9e-110 402.5 752 44.7
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 9.0e-110 402.1 776 46.8
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.5e-109 401.4 778 47.3
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 2.6e-109 400.6 790 41.4
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.3e-108 398.3 785 42.7
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 7.2e-107 392.5 737 44.9
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 9.3e-107 392.1 815 45.9
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 1.6e-106 391.3 887 43.4
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.5e-106 390.2 769 47.7
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.1e-104 385.2 778 43.4
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 4.3e-104 383.3 813 41.8
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 5.7e-104 382.9 805 43.0
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 1.4e-102 378.3 706 44.5
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 2.4e-102 377.5 768 45.1
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 2.0e-101 374.4 779 47.9
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 1.3e-100 371.7 779 44.9
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 1.3e-100 371.7 732 48.5
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.7e-100 371.3 781 43.0
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 7.2e-99 365.9 695 50.5
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 3.6e-98 363.6 740 42.7
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 6.7e-97 359.4 754 48.5
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.1e-96 358.6 781 42.8
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 4.3e-96 356.7 774 45.0
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.3e-95 355.1 765 39.0
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 1.7e-95 354.8 789 40.1
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 2.2e-95 354.4 704 46.2
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 2.8e-95 354.0 746 42.9
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.1e-94 350.1 708 48.0
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 5.3e-94 349.7 793 39.0
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 2.0e-93 347.8 795 39.5
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 3.4e-93 347.1 759 41.1
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 3.8e-92 343.6 799 41.6
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 6.5e-92 342.8 739 44.0
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 4.2e-91 340.1 751 39.0
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 5.5e-91 339.7 803 43.3
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.2e-90 338.6 747 44.3
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 3.6e-90 337.0 789 38.1
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 1.0e-89 335.5 793 36.8
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.3e-89 334.3 728 38.0
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 1.1e-88 332.0 640 46.9
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 7.4e-88 329.3 756 42.3
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 8.2e-87 325.9 758 42.1
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.4e-86 325.1 658 49.1
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 2.0e-85 321.2 745 42.7
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 2.6e-85 320.9 774 41.2
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 1.7e-84 318.2 783 40.6
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 2.9e-84 317.4 739 38.8
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 3.8e-84 317.0 804 37.6
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 1.1e-83 315.5 772 37.7
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 1.5e-83 315.1 848 38.7
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 4.7e-82 310.1 748 36.2
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.3e-81 307.8 766 35.8
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 3.0e-81 307.4 702 40.5
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 2.0e-80 304.7 767 37.8
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 5.7e-80 303.1 744 37.2
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.7e-79 301.6 764 35.1
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 1.7e-79 301.6 732 41.4
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 4.8e-79 300.1 746 38.2
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 4.8e-79 300.1 813 35.5
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 5.3e-78 296.6 815 41.7
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.5e-77 293.9 715 42.0
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 4.5e-77 293.5 761 44.4
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 2.5e-75 287.7 683 42.8
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 5.5e-75 286.6 718 37.0
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 7.2e-75 286.2 788 36.2
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 4.0e-73 280.4 817 34.9
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 4.0e-73 280.4 804 35.4
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 4.4e-72 276.9 734 37.1
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.7e-71 275.0 762 42.1
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 2.2e-71 274.6 756 36.5
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 2.8e-71 274.2 805 34.9
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 4.8e-71 273.5 698 38.7
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 1.3e-68 265.4 746 36.6
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 5.0e-68 263.5 853 33.8
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 2.5e-67 261.2 769 36.9
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 3.2e-67 260.8 713 34.2
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 3.0e-65 254.2 745 35.7
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 2.6e-64 251.1 719 34.1
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 7.5e-64 249.6 789 34.5
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 9.8e-64 249.2 764 39.9
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 1.8e-62 245.0 742 36.1
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 1.2e-56 225.7 620 33.5
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 1.2e-56 225.7 770 31.2
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 1.2e-56 225.7 770 31.2
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 1.5e-56 225.3 776 31.2
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 3.4e-56 224.2 774 31.0
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 9.8e-56 222.6 776 31.2
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 4.9e-55 220.3 693 34.2
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.3e-51 207.2 746 31.8
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 4.7e-50 203.8 881 33.8
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.0e-49 202.6 780 32.9
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.8e-49 201.8 734 31.2
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 1.5e-48 198.7 884 34.8
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 4.4e-48 197.2 734 31.3
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 9.8e-48 196.1 488 44.3
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.7e-47 195.3 776 32.3
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 2.9e-47 194.5 699 31.9
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 1.4e-46 192.2 680 32.2
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 2.4e-46 191.4 677 32.2
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 7.0e-46 189.9 870 32.9
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 1.6e-45 188.7 695 32.1
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 6.6e-44 183.3 676 31.8
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.9e-43 181.8 156 65.4
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 6.2e-42 176.8 749 30.4
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.2e-40 172.6 594 32.2
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 5.8e-40 170.2 809 33.4
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 9.8e-40 169.5 711 36.6
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 4.9e-39 167.2 464 39.9
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 3.5e-37 161.0 204 51.0
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 6.0e-37 160.2 703 35.0
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 6.0e-37 160.2 622 32.6
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 3.9e-36 157.5 501 43.5
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 1.5e-35 155.6 227 50.7
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 3.3e-35 154.5 433 36.5
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 1.4e-33 149.1 298 39.6
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 2.3e-33 148.3 152 57.9
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 5.2e-33 147.1 263 42.2
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 1.2e-32 146.0 739 30.6
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.2e-30 137.9 475 31.8
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 3.5e-29 134.4 130 61.5
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 6.0e-29 133.7 188 48.4
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 2.5e-27 128.3 157 49.7
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 1.6e-26 125.6 171 52.0
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 7.3e-19 100.1 106 50.9
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 1.3e-18 99.4 124 59.7
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.8e-18 97.4 187 37.4
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.4e-17 95.9 139 54.0
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 7.6e-16 90.1 697 26.1
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 1.6e-13 82.4 50 80.0
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 8.7e-12 76.6 268 28.7
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 9.9e-08 63.2 79 58.2
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.2e-07 62.0 339 27.4
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 1.1e-06 59.7 330 28.5
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 9.3e-06 56.6 348 27.6


User provided reference genes

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