Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 1.7e-249 865.5 442 100.0
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 1.0e-201 706.8 449 84.0
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.5e-200 703.0 447 83.2
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.8e-198 696.0 450 82.4
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 2.4e-195 685.6 451 81.4
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 3.9e-193 678.3 450 81.1
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 1.3e-132 477.2 465 64.3
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 2.5e-107 393.3 460 57.6
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 4.4e-88 329.3 468 51.7
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 6.9e-81 305.4 431 50.1
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.6e-77 294.3 453 46.6
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 7.6e-72 275.4 426 46.5
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.1e-67 261.5 437 46.7
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 9.6e-67 258.5 453 43.9
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 8.2e-66 255.4 454 41.2
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 1.3e-63 248.1 447 43.2
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 8.4e-63 245.4 400 46.8
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 8.4e-63 245.4 428 45.3
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 1.6e-61 241.1 454 42.5
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 2.7e-61 240.4 425 43.1
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 4.6e-61 239.6 431 43.9
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 2.3e-60 237.3 455 43.1
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 4.3e-59 233.0 461 44.5
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 1.8e-57 227.6 430 44.2
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 2.4e-57 227.3 453 41.5
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 3.1e-57 226.9 437 41.9
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 4.1e-57 226.5 453 42.8
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 5.3e-57 226.1 428 42.8
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 5.9e-56 222.6 431 42.7
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 7.7e-56 222.2 441 40.8
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 1.3e-55 221.5 490 40.0
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 2.9e-55 220.3 435 41.1
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 1.1e-54 218.4 468 41.5
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.1e-54 218.4 421 40.6
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.9e-54 217.6 433 42.3
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 4.3e-51 206.5 456 39.7
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 1.3e-50 204.9 461 38.0
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 9.1e-49 198.7 457 38.5
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 9.1e-49 198.7 454 37.0
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 1.5e-48 198.0 446 38.1
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 2.0e-48 197.6 446 40.8
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 7.7e-48 195.7 434 40.8
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 6.5e-47 192.6 457 38.9
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 3.2e-46 190.3 382 40.3
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 5.5e-46 189.5 229 49.3
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 3.6e-45 186.8 434 39.4
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 6.1e-45 186.0 398 40.5
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 1.3e-42 178.3 436 37.6
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 1.7e-42 177.9 461 38.6
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 5.3e-41 172.9 436 36.7
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 7.0e-41 172.6 334 45.8
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 7.0e-41 172.6 432 38.4
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 2.0e-40 171.0 433 35.1
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 3.5e-40 170.2 445 36.6
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 7.7e-40 169.1 456 37.7
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 1.3e-39 168.3 410 38.0
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 2.2e-39 167.5 454 37.0
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 5.0e-39 166.4 415 36.9
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 1.5e-38 164.9 436 36.0
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 1.5e-38 164.9 468 36.1
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 1.9e-38 164.5 429 37.5
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.9e-38 164.5 462 35.5
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 4.2e-38 163.3 450 33.8
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 9.4e-38 162.2 464 35.8
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.2e-37 161.8 459 33.6
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 1.6e-37 161.4 460 35.9
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 4.7e-37 159.8 384 37.5
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 8.0e-37 159.1 464 33.4
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.0e-36 158.7 469 36.9
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 2.3e-36 157.5 468 33.8
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 8.8e-36 155.6 467 33.8
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 8.8e-36 155.6 446 37.0
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 1.5e-35 154.8 261 41.0
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 1.5e-35 154.8 400 37.0
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 1.5e-35 154.8 448 37.9
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 2.0e-35 154.5 454 34.6
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 7.5e-35 152.5 447 36.0
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 8.2e-34 149.1 431 36.2
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 1.1e-33 148.7 445 37.3
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 1.8e-33 147.9 443 35.9
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 5.3e-33 146.4 448 35.5
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 4.5e-32 143.3 425 34.1
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 1.0e-31 142.1 455 34.9
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 2.9e-31 140.6 452 35.4
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 3.8e-31 140.2 443 36.8
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.9e-30 137.9 426 34.5
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 7.2e-30 136.0 426 35.4
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 1.2e-27 128.6 435 32.6
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 2.6e-27 127.5 469 33.3
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 7.5e-27 125.9 460 33.5
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 4.8e-26 123.2 453 30.9
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 6.3e-26 122.9 292 38.0
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 1.1e-25 122.1 440 35.2
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.1e-25 122.1 440 31.1
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 1.8e-25 121.3 294 33.3
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 4.1e-25 120.2 459 33.8
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 3.5e-24 117.1 225 40.4
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 3.5e-24 117.1 436 34.2
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 7.7e-24 115.9 432 30.6
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 1.3e-23 115.2 440 28.4
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 2.9e-23 114.0 449 30.1
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 6.5e-23 112.8 434 31.3
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 4.2e-22 110.2 322 34.2
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 1.2e-21 108.6 423 31.0
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 2.1e-21 107.8 265 36.2
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 3.6e-21 107.1 444 30.9
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 3.6e-21 107.1 449 28.7
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 1.4e-20 105.1 449 30.7
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 3.0e-20 104.0 432 28.7
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 6.8e-20 102.8 422 33.9
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.6e-19 100.9 424 30.9
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 7.5e-19 99.4 427 30.2
VMungo1127G1756 Vigna mungo HOM05D006105 ORTHO05D006345 2.2e-18 97.8 348 33.9
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 9.1e-17 92.4 212 34.9
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 3.5e-16 90.5 373 32.4
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 4.5e-16 90.1 340 33.5
CANSAT35G1552 Cannabis sativa HOM05D006105 ORTHO05D006345 5.9e-16 89.7 461 27.3
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.0e-15 89.0 373 32.2
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.3e-15 88.6 453 29.1
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.9e-15 87.4 347 32.6
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 5.0e-15 86.7 268 32.1
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 6.6e-15 86.3 437 30.2
ECA236G3415 Erigeron canadensis HOM05D006105 ORTHO05D006345 8.6e-15 85.9 209 38.8
TAR627G0886 Trochodendron aralioides HOM05D000157 ORTHO05D006345 4.3e-14 83.6 250 34.0
Aqoxy4G00493 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 5.6e-14 83.2 436 28.9
Sopen10g003350 Solanum pennellii HOM05D016660 ORTHO05D006345 4.4e-11 73.6 204 32.4
Thecc.06G176400 Theobroma cacao HOM05D013066 ORTHO05D010890 7.5e-11 72.8 465 26.7
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 8.3e-10 69.3 528 26.1
ATR0602G093 Amborella trichopoda HOM05D006105 ORTHO05D006345 2.7e-08 64.3 439 25.3
Migut.H01972 Erythranthe guttata HOM05D006105 ORTHO05D006345 5.9e-08 63.2 185 29.2
SEGI_16969 Sequoiadendron giganteum HOM05D016559 ORTHO05D019650 2.3e-07 61.2 298 30.2
GSVIVG01021165001 Vitis vinifera HOM05D006105 ORTHO05D006345 2.3e-07 61.2 443 27.3
Glyma.15G079800 Glycine max HOM05D009670 ORTHO05D010890 3.0e-07 60.8 451 26.6
HanXRQChr17g0545011 Helianthus annuus HOM05D006105 ORTHO05D006345 8.6e-07 59.3 182 30.8
Solyc10g007156.2 Solanum lycopersicum HOM05D016660 ORTHO05D006345 5.6e-06 56.6 191 33.0


User provided reference genes

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