Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0031421 Rosa chinensis HOM05D006956 ORTHO05D008824 4.0e-50 201.1 98 100.0
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 6.7e-21 104.0 111 60.4
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 6.7e-21 104.0 111 60.4
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 8.8e-21 103.6 108 54.6
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 8.8e-21 103.6 108 59.3
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 1.1e-20 103.2 110 57.3
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 1.5e-20 102.8 109 56.0
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 1.5e-20 102.8 110 57.3
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 3.3e-20 101.7 109 55.0
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 3.3e-20 101.7 111 57.7
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 5.7e-20 100.9 110 54.5
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 5.7e-20 100.9 111 58.6
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 7.4e-20 100.5 111 57.7
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 7.4e-20 100.5 110 57.3
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 9.7e-20 100.1 108 54.6
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 1.3e-19 99.8 111 53.2
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 1.3e-19 99.8 108 55.6
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 1.3e-19 99.8 108 57.4
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 1.3e-19 99.8 110 56.4
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 1.3e-19 99.8 108 54.6
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 1.3e-19 99.8 108 54.6
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 2.2e-19 99.0 111 56.8
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 2.8e-19 98.6 108 57.4
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 2.8e-19 98.6 111 58.6
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 3.7e-19 98.2 106 57.5
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 3.7e-19 98.2 111 52.3
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 4.8e-19 97.8 112 53.6
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 1.4e-18 96.3 110 55.5
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 1.4e-18 96.3 110 55.5
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 2.4e-18 95.5 110 56.4
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 2.4e-18 95.5 108 54.6
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 2.4e-18 95.5 111 56.8
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 3.1e-18 95.1 111 54.1
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 5.3e-18 94.4 111 53.2
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 7.0e-18 94.0 107 56.1
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 9.1e-18 93.6 111 54.1
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 1.6e-17 92.8 107 54.2
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 2.0e-17 92.4 107 53.3
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 2.6e-17 92.0 112 54.5
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 3.5e-17 91.7 108 53.7
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 3.5e-17 91.7 107 53.3
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 7.7e-17 90.5 107 52.3
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 7.7e-17 90.5 107 52.3
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 1.3e-16 89.7 107 52.3
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 1.7e-16 89.4 107 51.4
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 1.7e-16 89.4 107 52.3
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 2.9e-16 88.6 108 50.9
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 5.0e-16 87.8 107 51.4
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 5.0e-16 87.8 74 63.5
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 6.5e-16 87.4 107 49.5
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 6.5e-16 87.4 108 50.9
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 8.5e-16 87.0 107 51.4
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 8.5e-16 87.0 108 52.8
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 1.5e-15 86.3 107 50.5
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 1.5e-15 86.3 108 50.0
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 1.9e-15 85.9 67 67.2
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 2.5e-15 85.5 107 50.5
vmacro09782 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 2.5e-15 85.5 70 67.1
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 3.2e-15 85.1 108 50.0
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 4.2e-15 84.7 110 49.1
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 4.2e-15 84.7 106 50.0
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 9.4e-15 83.6 109 51.4
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 2.1e-14 82.4 111 45.0
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 3.6e-14 81.6 109 45.0
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 3.6e-14 81.6 107 48.6
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 6.1e-14 80.9 108 47.2
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 1.0e-13 80.1 108 45.4
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 1.4e-13 79.7 106 48.1
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 1.8e-13 79.3 107 47.7
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 2.3e-13 79.0 109 45.9
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 2.3e-13 79.0 108 47.2
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 3.0e-13 78.6 108 47.2
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 4.0e-13 78.2 108 42.6
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 5.2e-13 77.8 109 44.0
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 6.8e-13 77.4 111 44.1
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 8.8e-13 77.0 108 44.4
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 1.2e-12 76.6 111 44.1
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 1.2e-12 76.6 111 44.1
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 1.7e-11 72.8 107 43.0
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 4.8e-11 71.2 108 42.6
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 1.1e-10 70.1 109 41.3
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 1.8e-10 69.3 69 58.0
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 2.4e-10 68.9 109 41.3
SEGI_37897 Sequoiadendron giganteum HOM05D006956 ORTHO05D008824 2.4e-10 68.9 107 43.0
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 2.4e-10 68.9 105 40.0
Potri.011G142501 Populus trichocarpa HOM05D006956 ORTHO05D008824 3.1e-10 68.6 68 57.4
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 4.1e-10 68.2 108 40.7
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 2.0e-09 65.9 110 41.8
Lalb_Chr25g0284921 Lupinus albus HOM05D006956 ORTHO05D008824 4.5e-09 64.7 70 52.9
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 2.2e-08 62.4 82 51.2
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 5.0e-08 61.2 62 51.6
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 1.2e-06 56.6 86 47.7
Glyma.08G170300 Glycine max HOM05D006956 ORTHO05D008824 8.0e-06 53.9 39 69.2


User provided reference genes

Program Settings