Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0031411 Rosa chinensis HOM05D008293 ORTHO05D010504 2.3e-108 395.6 202 100.0
RcHm_v2.0_Chr5g0030831 Rosa chinensis HOM05D008293 ORTHO05D010504 1.6e-101 372.9 201 95.0
RcHm_v2.0_Chr5g0031211 Rosa chinensis HOM05D008293 ORTHO05D010504 1.8e-73 279.6 150 94.7
Prupe.4G167100 Prunus persica HOM05D008293 ORTHO05D010504 1.3e-71 273.5 222 68.5
MD03G1241800 Malus domestica HOM05D008293 ORTHO05D010504 4.3e-70 268.5 221 65.2
RcHm_v2.0_Chr7g0194341 Rosa chinensis HOM05D008293 ORTHO05D010504 4.0e-68 261.9 222 68.9
QL08p026533 Quercus lobata HOM05D008293 ORTHO05D010504 9.2e-65 250.8 221 61.1
Haze_09337 Corylus avellana HOM05D008293 ORTHO05D010504 1.7e-63 246.5 234 58.1
CANSAT35G0405 Cannabis sativa HOM05D008293 ORTHO05D010504 2.5e-62 242.7 221 61.5
Actinidia18798 Actinidia chinensis HOM05D008293 ORTHO05D010504 3.3e-62 242.3 222 60.8
Ciclev10020583m.g Citrus clementina HOM05D008293 ORTHO05D010504 4.3e-62 241.9 221 58.4
GSVIVG01014211001 Vitis vinifera HOM05D008293 ORTHO05D010504 5.6e-62 241.5 221 59.3
Dinv14981 Davidia involucrata HOM05D008293 ORTHO05D010504 2.1e-61 239.6 221 57.0
COL.COLO4_24863 Corchorus olitorius HOM05D008293 ORTHO05D010504 4.7e-61 238.4 221 58.4
Hma1.2p1_2505F.1_g323420 Hydrangea macrophylla HOM05D008293 ORTHO05D010504 6.2e-61 238.0 222 58.6
TAR627G0720 Trochodendron aralioides HOM05D008293 ORTHO05D010504 1.8e-60 236.5 220 58.6
CSS0000482 Camellia sinensis var. sinensis HOM05D008293 ORTHO05D010504 3.1e-60 235.7 222 57.2
Thecc.07G109900 Theobroma cacao HOM05D008293 ORTHO05D010504 4.0e-60 235.3 221 57.0
Rhsim04G0025400 Rhododendron simsii HOM05D008293 ORTHO05D010504 1.3e-58 230.3 221 57.0
Lj1A831T70 Lonicera japonica HOM05D008293 ORTHO05D010504 2.9e-58 229.2 221 57.0
Atru.chr2.2164 Acer truncatum HOM05D008293 ORTHO05D010504 1.4e-57 226.9 221 55.2
Nitab4.5_0000246g0170 Nicotiana tabacum HOM05D008293 ORTHO05D010504 2.1e-56 223.0 221 53.8
PGR083G2613 Punica granatum HOM05D008293 ORTHO05D010504 2.1e-56 223.0 228 57.0
Gohir.A13G148900 Gossypium hirsutum HOM05D008293 ORTHO05D010504 1.0e-55 220.7 221 54.3
Nitab4.5_0001145g0060 Nicotiana tabacum HOM05D008293 ORTHO05D010504 2.3e-55 219.5 221 53.8
Gohir.D13G153400 Gossypium hirsutum HOM05D008293 ORTHO05D010504 8.6e-55 217.6 221 53.8
Gorai.013G173300 Gossypium raimondii HOM05D008293 ORTHO05D010504 1.9e-54 216.5 223 53.8
Migut.M00735 Erythranthe guttata HOM05D008293 ORTHO05D010504 5.6e-54 214.9 221 54.8
Ciclev10023335m.g Citrus clementina HOM05D008293 ORTHO05D010504 3.6e-53 212.2 195 57.4
Peaxi162Scf00069g02232 Petunia axillaris HOM05D008293 ORTHO05D010504 2.3e-52 209.5 221 54.3
Sopen07g030780 Solanum pennellii HOM05D008293 ORTHO05D010504 3.1e-52 209.1 221 51.6
PGSC0003DMG400012428 Solanum tuberosum HOM05D008293 ORTHO05D010504 3.1e-52 209.1 221 53.4
Cc05_g11210 Coffea canephora HOM05D008293 ORTHO05D010504 4.0e-52 208.8 221 52.5
PSO782G2569 Papaver somniferum HOM05D008293 ORTHO05D010504 4.0e-52 208.8 221 53.4
CAN.G162.9 Capsicum annuum HOM05D008293 ORTHO05D010504 2.0e-51 206.5 221 52.9
Aqoxy4G00368 Aquilegia oxysepala HOM05D008293 ORTHO05D010504 2.3e-47 193.0 221 48.9
AagrBONN_evm.TU.Sc2ySwM_344.4932 Anthoceros agrestis HOM05D008293 ORTHO05D010504 1.1e-46 190.7 221 48.4
HPP92_024759 Vanilla planifolia HOM05D008293 ORTHO05D010504 1.7e-42 176.8 222 46.4
Pp3c19_10600 Physcomitrium patens HOM05D008293 ORTHO05D010504 8.4e-42 174.5 221 45.7
SGA_v2.0_scaffold55G19705 Striga asiatica HOM05D008293 ORTHO05D010504 1.9e-41 173.3 222 50.0
Pp3c22_22050 Physcomitrium patens HOM05D008293 ORTHO05D010504 1.2e-40 170.6 221 45.7
Cpa.g.sc97.100 Carica papaya HOM05D008293 ORTHO05D010504 2.1e-40 169.9 169 55.0
Mapoly0032s0102 Marchantia polymorpha HOM05D008293 ORTHO05D010504 3.5e-40 169.1 221 46.2
SEGI_20639 Sequoiadendron giganteum HOM05D008293 ORTHO05D010504 6.0e-40 168.3 220 46.4
SMO118G0404 Selaginella moellendorffii HOM05D008293 ORTHO05D010504 1.3e-39 167.2 220 46.4
Solyc07g062543.1 Solanum lycopersicum HOM05D008293 ORTHO05D010504 6.2e-37 158.3 169 49.1
CBR_g40882 Chara braunii HOM05D008293 ORTHO05D010504 1.4e-36 157.1 178 49.4
Atru.chr2.2165 Acer truncatum HOM05D003516 ORTHO05D004068 5.3e-36 155.2 153 55.6
Nn1g09105 Nelumbo nucifera HOM05D008293 ORTHO05D010504 1.2e-32 144.1 221 43.0
MD10G1199100 Malus domestica HOM05D008293 ORTHO05D010504 1.3e-29 134.0 171 46.2
PRCOL_00003950 Prasinoderma coloniale HOM05D008293 ORTHO05D010504 1.9e-25 120.2 168 42.3
AagrBONN_evm.TU.Sc2ySwM_344.893 Anthoceros agrestis HOM05D008293 ORTHO05D010504 1.0e-23 114.4 100 58.0


User provided reference genes

Program Settings