Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0030941 Rosa chinensis HOM05D000718 ORTHO05D007431 3.9e-265 917.5 451 100.0
FvH4_3g18310 Fragaria vesca HOM05D000718 ORTHO05D007431 1.3e-249 865.9 451 93.8
FAN25G1161 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.6e-247 859.0 451 93.3
FAN16G1727 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.4e-246 855.9 460 91.7
FAN11G0057 Fragaria x ananassa HOM05D000718 ORTHO05D007431 4.5e-245 850.9 451 92.9
Prupe.4G164800 Prunus persica HOM05D000718 ORTHO05D007431 7.7e-237 823.5 453 88.5
MD03G1243500 Malus domestica HOM05D000718 ORTHO05D007431 2.2e-236 822.0 454 87.9
CANSAT35G0289 Cannabis sativa HOM05D000718 ORTHO05D007431 8.2e-215 750.4 456 79.2
FAN21G3716 Fragaria x ananassa HOM05D000718 ORTHO05D007431 3.5e-213 745.0 393 92.6
CiPaw.11G160400 Carya illinoinensis HOM05D000718 ORTHO05D007431 1.0e-212 743.4 458 78.2
Haze_09324 Corylus avellana HOM05D000718 ORTHO05D007431 2.7e-210 735.3 470 76.8
GSVIVG01014199001 Vitis vinifera HOM05D000718 ORTHO05D007431 2.0e-208 729.2 456 76.1
Lj3g0001987 Lotus japonicus HOM05D000718 ORTHO05D007431 4.4e-208 728.0 457 75.7
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 8.3e-207 723.8 443 78.8
Ca_12194_v3 Cicer arietinum L. HOM05D000718 ORTHO05D007431 1.8e-206 722.6 457 74.6
Dinv18364 Davidia involucrata HOM05D000718 ORTHO05D007431 5.4e-206 721.1 459 77.1
PGR031G2045 Punica granatum HOM05D000718 ORTHO05D007431 4.5e-205 718.0 454 75.3
Eucgr.K01884 Eucalyptus grandis HOM05D000718 ORTHO05D007431 5.9e-205 717.6 450 75.3
Rhsim06G0207800 Rhododendron simsii HOM05D000718 ORTHO05D007431 1.1e-203 713.4 454 75.8
THA.LOC104822564 Tarenaya hassleriana HOM05D000718 ORTHO05D007431 9.5e-203 710.3 456 73.9
Glyma.12G157600 Glycine max HOM05D000718 ORTHO05D007431 1.6e-202 709.5 457 74.4
Psat0s1037g0040 Pisum sativum HOM05D000718 ORTHO05D007431 4.7e-202 708.0 460 73.9
Duzib187G1570 Durio zibethinus HOM05D000718 ORTHO05D007431 8.0e-202 707.2 450 74.0
Thecc.07G114900 Theobroma cacao HOM05D000718 ORTHO05D007431 1.4e-201 706.4 447 74.0
TWI39G0589 Tripterygium wilfordii HOM05D000718 ORTHO05D007431 1.8e-201 706.1 453 74.4
Lj1A829G32 Lonicera japonica HOM05D000718 ORTHO05D007431 2.3e-201 705.7 457 73.1
arahy.Tifrunner.gnm1.ann1.6IHZ0U Arachis hypogaea HOM05D000718 ORTHO05D007431 4.0e-201 704.9 459 73.4
TPR.G16488 Trifolium pratense HOM05D000718 ORTHO05D007431 3.4e-200 701.8 458 73.4
Atru.chr2.2147 Acer truncatum HOM05D000718 ORTHO05D007431 4.4e-200 701.4 456 73.7
ClCG11G017460 Citrullus lanatus HOM05D000718 ORTHO05D007431 9.8e-200 700.3 457 74.4
Sed0007644 Sechium edule HOM05D000718 ORTHO05D007431 9.8e-200 700.3 453 72.6
MELO3C025639.2 Cucumis melo HOM05D000718 ORTHO05D007431 1.3e-199 699.9 457 74.0
Lalb_Chr01g0006831 Lupinus albus HOM05D000718 ORTHO05D007431 6.3e-199 697.6 453 73.1
arahy.Tifrunner.gnm1.ann1.STN4DM Arachis hypogaea HOM05D000718 ORTHO05D007431 1.4e-198 696.4 455 73.2
Potri.001G390700 Populus trichocarpa HOM05D000718 ORTHO05D007431 3.1e-198 695.3 454 72.9
QL08p026242 Quercus lobata HOM05D000718 ORTHO05D007431 4.1e-198 694.9 470 73.8
COL.COLO4_17547 Corchorus olitorius HOM05D000718 ORTHO05D007431 1.6e-197 693.0 471 70.9
Glyma.06G228900 Glycine max HOM05D000718 ORTHO05D007431 1.6e-197 693.0 458 73.1
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 3.5e-197 691.8 457 73.1
Thhalv10020708m.g Eutrema salsugineum HOM05D000718 ORTHO05D007431 1.3e-196 689.9 455 72.7
Ah.04g164270 Amaranthus hybridus HOM05D000718 ORTHO05D007431 1.1e-195 686.8 457 72.0
Carub.0003s1457 Capsella rubella HOM05D000718 ORTHO05D007431 3.3e-195 685.3 455 71.6
CARHR089850 Cardamine hirsuta HOM05D000718 ORTHO05D007431 5.6e-195 684.5 455 71.4
Medtr8g464030 Medicago truncatula HOM05D000718 ORTHO05D007431 2.1e-194 682.6 497 67.8
Phvul.011G162200 Phaseolus vulgaris HOM05D000718 ORTHO05D007431 2.1e-194 682.6 460 71.7
AL3G27230 Arabidopsis lyrata HOM05D000718 ORTHO05D007431 3.6e-194 681.8 455 71.4
PGSC0003DMG400007071 Solanum tuberosum HOM05D000718 ORTHO05D007431 6.1e-194 681.0 455 72.1
CAN.G375.14 Capsicum annuum HOM05D000718 ORTHO05D007431 1.8e-193 679.5 455 71.9
DCAR_013156 Daucus carota HOM05D000718 ORTHO05D007431 3.0e-193 678.7 455 72.3
Nitab4.5_0006953g0050 Nicotiana tabacum HOM05D000718 ORTHO05D007431 4.0e-193 678.3 455 72.1
EL10Ac4g08344 Beta vulgaris HOM05D000718 ORTHO05D007431 5.2e-193 677.9 457 70.7
Gohir.A01G054400 Gossypium hirsutum HOM05D000718 ORTHO05D007431 6.8e-193 677.6 449 71.7
Sopen07g030690 Solanum pennellii HOM05D000718 ORTHO05D007431 8.9e-193 677.2 455 71.6
Hund02254 Selenicereus undatus HOM05D000718 ORTHO05D007431 1.2e-192 676.8 453 72.0
Solyc07g062450.3 Solanum lycopersicum HOM05D000718 ORTHO05D007431 1.2e-192 676.8 455 71.4
Gorai.002G054700 Gossypium raimondii HOM05D000718 ORTHO05D007431 3.4e-192 675.2 449 71.3
Nitab4.5_0003565g0040 Nicotiana tabacum HOM05D000718 ORTHO05D007431 5.8e-192 674.5 455 72.1
Gohir.D01G042724 Gossypium hirsutum HOM05D000718 ORTHO05D007431 9.8e-192 673.7 449 71.0
AT3G14910 Arabidopsis thaliana HOM05D000718 ORTHO05D007431 1.7e-191 672.9 455 70.3
Lalb_Chr03g0031171 Lupinus albus HOM05D000718 ORTHO05D007431 1.7e-191 672.9 453 71.1
Cc05_g11090 Coffea canephora HOM05D000718 ORTHO05D007431 3.7e-191 671.8 457 72.2
Peaxi162Scf00111g01475 Petunia axillaris HOM05D000718 ORTHO05D007431 4.9e-191 671.4 456 71.5
BolC5t33913H Brassica oleracea HOM05D000718 ORTHO05D007431 6.4e-191 671.0 455 71.0
vmacro23465 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.4e-190 669.8 471 70.3
AUR62042779 Chenopodium quinoa HOM05D000718 ORTHO05D007431 3.2e-190 668.7 471 68.6
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 2.0e-189 666.0 448 71.0
Oeu025333.1 Olea europaea HOM05D000718 ORTHO05D007431 3.5e-189 665.2 461 70.7
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 1.7e-188 662.9 451 70.3
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 3.0e-188 662.1 451 70.5
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 3.0e-188 662.1 451 70.5
SalBow7G4178 Salvia bowleyana HOM05D000718 ORTHO05D007431 1.1e-187 660.2 463 70.4
Migut.H01998 Erythranthe guttata HOM05D000718 ORTHO05D007431 2.5e-187 659.1 466 69.5
SalBow7G4376 Salvia bowleyana HOM05D000718 ORTHO05D007431 7.3e-187 657.5 463 70.0
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 7.5e-184 647.5 455 69.7
Aqoxy4G00321 Aquilegia oxysepala HOM05D000718 ORTHO05D007431 4.9e-183 644.8 465 67.3
PSO782G3001 Papaver somniferum HOM05D000718 ORTHO05D007431 4.9e-183 644.8 458 67.9
ECA240G1747 Erigeron canadensis HOM05D000718 ORTHO05D007431 6.4e-183 644.4 456 68.9
CSS0021542 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 2.4e-182 642.5 457 69.8
Nn1g04439 Nelumbo nucifera HOM05D000718 ORTHO05D007431 5.4e-182 641.3 425 72.7
HanXRQChr15g0476211 Helianthus annuus HOM05D000718 ORTHO05D007431 4.6e-181 638.3 458 68.8
PSO478G1672 Papaver somniferum HOM05D000718 ORTHO05D007431 1.0e-180 637.1 458 67.0
Lsat_1_v5_gn_9_99900 Lactuca sativa HOM05D000718 ORTHO05D007431 3.0e-180 635.6 454 68.9
MBI07_g09566_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D007431 6.6e-180 634.4 513 61.8
Nn1g09174 Nelumbo nucifera HOM05D000718 ORTHO05D007431 3.1e-177 625.5 458 67.9
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 1.5e-176 623.2 427 70.5
Manes.03G101200 Manihot esculenta HOM05D000718 ORTHO05D007431 8.3e-175 617.5 398 73.6
VMungo1127G0879 Vigna mungo HOM05D000718 ORTHO05D007431 9.5e-171 604.0 410 71.2
CDE04G1093 Ceratophyllum demersum HOM05D000718 ORTHO05D007431 1.4e-169 600.1 454 63.9
CSS0043856 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 9.2e-166 587.4 455 63.7
vmacro11939 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.8e-161 573.2 466 63.5
ATR0602G196 Amborella trichopoda HOM05D000718 ORTHO05D007431 6.9e-161 571.2 454 61.7
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 3.4e-160 568.9 425 64.9
CSS0014195 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 4.9e-159 565.1 455 63.3
unitig_52.g17395 Utricularia gibba HOM05D000718 ORTHO05D007431 4.9e-151 538.5 462 59.5
HPP92_023429 Vanilla planifolia HOM05D000718 ORTHO05D007431 1.8e-145 520.0 460 58.3
Os09g0315800 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D007431 9.9e-144 514.2 469 58.6
Ciclev10021305m.g Citrus clementina HOM05D000718 ORTHO05D007431 1.1e-139 500.7 308 79.5
SEGI_16322 Sequoiadendron giganteum HOM05D000718 ORTHO05D007431 1.3e-138 497.3 448 54.9
MD11G1263600 Malus domestica HOM05D000718 ORTHO05D007431 2.6e-136 489.6 281 85.4
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 2.6e-128 463.0 415 58.3
Zm00001eb309730 Zea mays HOM05D000718 ORTHO05D007431 3.0e-124 449.5 337 63.8
CsaV3_4G033110 Cucumis sativus L. HOM05D000718 ORTHO05D007431 4.2e-118 429.1 300 68.0
Sc16g0007570 Simmondsia chinensis HOM05D000718 ORTHO05D007431 3.9e-116 422.5 298 70.5
vmacro11937 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.8e-108 397.1 329 63.5
vmacro23384 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 2.2e-103 380.2 343 59.2
SHI27609 Sapria himalayana HOM05D000718 ORTHO05D007431 3.2e-102 376.3 404 47.8
AagrBONN_evm.TU.Sc2ySwM_228.1801 Anthoceros agrestis HOM05D000718 ORTHO05D007431 1.4e-100 370.9 453 44.6
Thecc.07G114700 Theobroma cacao HOM05D000718 ORTHO05D007431 8.0e-93 345.1 376 49.5
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 1.3e-90 337.8 450 45.6
Sp3g13120 Schrenkiella parvula HOM05D000718 ORTHO05D007431 2.4e-89 333.6 224 67.0
SMO367G0522 Selaginella moellendorffii HOM05D000718 ORTHO05D007431 4.5e-88 329.3 454 41.2
Pp3c4_25540 Physcomitrium patens HOM05D000718 ORTHO05D007431 8.0e-85 318.5 464 39.0
Mapoly0061s0004 Marchantia polymorpha HOM05D000718 ORTHO05D007431 3.0e-84 316.6 453 40.2
vmacro11938 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 4.5e-80 302.8 301 54.5
Psat4g090840 Pisum sativum HOM05D000718 ORTHO05D007431 1.3e-79 301.2 244 64.3
Psat3g077000 Pisum sativum HOM05D000718 ORTHO05D007431 1.2e-75 288.1 253 54.5
MSTRG.14233 Avicennia marina HOM05D000718 ORTHO05D007431 2.9e-74 283.5 231 60.6
Sc16g0007580 Simmondsia chinensis HOM05D000718 ORTHO05D007431 1.9e-62 244.2 162 67.3
Thecc.07G115900 Theobroma cacao HOM05D000718 ORTHO05D007431 5.4e-57 226.1 157 64.3
MD11G1263700 Malus domestica HOM05D000718 ORTHO05D007431 5.1e-47 193.0 118 78.0
Hund02252 Selenicereus undatus HOM05D000718 ORTHO05D007431 3.3e-46 190.3 172 63.4
Cpa.g.sc77.7 Carica papaya HOM05D000718 ORTHO05D007431 4.9e-42 176.4 117 74.4
PGSC0003DMG400011947 Solanum tuberosum HOM05D000718 ORTHO05D007431 6.4e-42 176.0 119 68.9
Thecc.07G115200 Theobroma cacao HOM05D000718 ORTHO05D007431 1.6e-37 161.4 119 61.3
TAR627G0847 Trochodendron aralioides HOM05D000718 ORTHO05D007431 1.8e-36 157.9 127 60.6
Psat2g113040 Pisum sativum HOM05D000718 ORTHO05D004709 5.3e-28 129.8 102 66.7
CBR_g49411 Chara braunii HOM05D000019 ORTHO05D000353 1.6e-24 118.2 416 26.9
CAN.G713.20 Capsicum annuum HOM05D000718 ORTHO05D007431 9.6e-22 109.0 83 60.2
Thecc.07G114000 Theobroma cacao HOM05D000718 ORTHO05D007431 4.2e-17 93.6 99 45.5
Thecc.07G114100 Theobroma cacao HOM05D000718 ORTHO05D007431 6.1e-16 89.7 52 82.7
Thecc.07G113800 Theobroma cacao HOM05D000718 ORTHO05D007431 3.3e-14 84.0 63 63.5
Lsat_1_v5_gn_9_99920 Lactuca sativa HOM05D000718 ORTHO05D007431 6.1e-08 63.2 54 64.8


User provided reference genes

Program Settings