Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 0.0e+00 1152.5 594 100.0
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 8.6e-204 714.1 595 67.2
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 8.9e-201 704.1 595 66.7
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.0e-151 541.2 595 56.6
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 9.7e-131 471.5 260 90.4
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 5.0e-127 459.1 239 96.2
FAN21G2926 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.0e-124 451.4 534 52.6
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 7.0e-121 438.7 248 87.5
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 7.8e-72 275.8 778 32.8
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 3.5e-56 223.8 341 42.2
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 5.8e-51 206.5 776 29.8
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 2.5e-49 201.1 366 42.3
FAN25G1049 Fragaria x ananassa HOM05D006067 ORTHO05D007327 7.1e-49 199.5 188 60.1
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 1.9e-46 191.4 384 38.8
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 3.3e-46 190.7 405 40.2
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 4.3e-46 190.3 306 44.4
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 5.7e-46 189.9 368 39.9
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 4.8e-45 186.8 368 37.5
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 2.4e-44 184.5 377 38.5
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 4.1e-44 183.7 400 38.5
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 2.6e-43 181.0 371 36.1
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 3.4e-43 180.6 373 40.8
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 5.9e-43 179.9 373 37.5
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 5.9e-43 179.9 373 37.5
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 2.9e-42 177.6 314 38.2
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 5.0e-42 176.8 387 39.3
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 1.1e-41 175.6 360 36.9
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 1.4e-41 175.3 287 39.4
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 1.4e-41 175.3 341 37.5
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 1.9e-41 174.9 295 40.0
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 1.2e-40 172.2 359 37.3
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 2.7e-40 171.0 421 36.8
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 3.6e-40 170.6 410 35.4
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 4.6e-40 170.2 265 42.3
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 1.0e-39 169.1 290 38.3
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 1.4e-39 168.7 302 43.4
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 1.1e-38 165.6 387 37.2
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 1.1e-38 165.6 328 38.1
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 2.5e-38 164.5 450 32.9
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 3.3e-38 164.1 318 38.7
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 2.2e-37 161.4 381 36.2
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 8.2e-37 159.5 369 35.5
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 1.4e-36 158.7 256 41.4
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 1.8e-36 158.3 547 29.1
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 3.1e-36 157.5 259 42.9
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.5e-35 155.2 333 37.5
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 2.0e-35 154.8 372 34.4
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 2.6e-35 154.5 281 39.1
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 1.3e-34 152.1 446 32.1
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 1.7e-34 151.8 191 49.2
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 2.9e-34 151.0 198 46.5
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 2.9e-34 151.0 326 38.3
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 5.0e-34 150.2 297 35.7
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 1.1e-33 149.1 198 46.5
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 1.9e-33 148.3 356 32.6
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 3.2e-33 147.5 359 33.1
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 4.2e-33 147.1 329 36.8
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 5.5e-33 146.7 198 46.0
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 7.2e-33 146.4 265 41.9
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 1.2e-32 145.6 396 32.3
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 1.0e-31 142.5 330 33.6
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 1.8e-31 141.7 262 36.3
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 2.3e-31 141.4 338 35.5
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 2.3e-31 141.4 191 47.1
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 3.9e-31 140.6 365 32.6
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 3.9e-31 140.6 371 34.5
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 1.5e-30 138.7 351 35.9
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 2.0e-30 138.3 268 40.7
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 5.7e-30 136.7 279 38.4
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 9.7e-30 136.0 329 35.0
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 2.8e-29 134.4 190 40.5
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 3.7e-29 134.0 361 33.2
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 4.8e-29 133.7 329 32.2
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 4.8e-29 133.7 275 34.2
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 1.1e-28 132.5 262 37.0
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 2.4e-28 131.3 302 35.8
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 3.1e-28 131.0 369 31.7
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 3.1e-28 131.0 431 29.9
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 4.1e-28 130.6 192 43.2
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 4.1e-28 130.6 319 32.3
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 5.3e-28 130.2 336 32.1
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 5.3e-28 130.2 369 32.5
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 5.3e-28 130.2 224 38.8
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 6.9e-28 129.8 334 32.6
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 6.9e-28 129.8 202 41.1
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 2.6e-27 127.9 336 31.8
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 4.5e-27 127.1 191 43.5
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 5.9e-27 126.7 367 34.9
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 7.7e-27 126.3 241 38.6
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 1.7e-26 125.2 277 34.3
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 5.0e-26 123.6 355 33.0
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 6.5e-26 123.2 298 35.2
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 2.5e-25 121.3 253 34.0
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 4.2e-25 120.6 474 28.9
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 5.5e-25 120.2 334 31.1
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 1.6e-24 118.6 333 31.2
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.6e-24 118.6 201 39.8
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 1.6e-24 118.6 347 29.7
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 1.0e-23 115.9 254 34.6
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.5e-22 112.1 227 39.2
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 3.3e-22 110.9 199 35.2
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 1.1e-20 105.9 356 32.3
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 1.1e-20 105.9 239 32.2
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 1.4e-20 105.5 256 31.2
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 1.4e-20 105.5 184 41.8
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 3.1e-20 104.4 258 33.3
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 9.1e-20 102.8 214 33.2
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 1.2e-19 102.4 208 38.0
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 2.0e-19 101.7 150 37.3
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 4.5e-19 100.5 284 31.7
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 5.9e-19 100.1 301 29.6
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 7.7e-19 99.8 308 29.2
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 7.2e-17 93.2 156 35.3
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.0e-15 89.4 243 29.6
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 1.4e-15 89.0 108 46.3
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.8e-15 88.6 75 53.3
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 2.0e-14 85.1 185 35.1
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 7.5e-14 83.2 83 45.8
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 7.5e-14 83.2 259 29.7
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 2.4e-12 78.2 149 38.3
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 3.1e-12 77.8 180 36.7
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 2.0e-11 75.1 91 45.1
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 4.5e-11 73.9 78 47.4
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 5.9e-11 73.6 51 58.8
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 7.7e-11 73.2 420 26.0
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 2.9e-10 71.2 154 29.9
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 3.2e-09 67.8 138 36.2
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 3.2e-09 67.8 84 39.3
Mapoly1798s0001 Marchantia polymorpha HOM05D006067 ORTHO05D007327 9.4e-09 66.2 62 50.0
Psat0s911g0040 Pisum sativum HOM05D006067 ORTHO05D007327 1.2e-06 59.3 43 55.8


User provided reference genes

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