Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0030831 Rosa chinensis HOM05D008293 ORTHO05D010504 4.9e-188 661.0 339 100.0
RcHm_v2.0_Chr5g0031211 Rosa chinensis HOM05D008293 ORTHO05D010504 1.0e-145 520.4 339 84.4
Prupe.4G167100 Prunus persica HOM05D008293 ORTHO05D010504 3.4e-136 488.8 346 74.9
MD03G1241800 Malus domestica HOM05D008293 ORTHO05D010504 3.8e-132 475.3 336 72.9
QL08p026533 Quercus lobata HOM05D008293 ORTHO05D010504 1.1e-123 447.2 356 65.4
Actinidia18798 Actinidia chinensis HOM05D008293 ORTHO05D010504 1.2e-120 437.2 350 64.9
GSVIVG01014211001 Vitis vinifera HOM05D008293 ORTHO05D010504 1.2e-120 437.2 340 65.9
Dinv14981 Davidia involucrata HOM05D008293 ORTHO05D010504 1.7e-119 433.3 346 63.0
Thecc.07G109900 Theobroma cacao HOM05D008293 ORTHO05D010504 1.4e-118 430.3 344 63.7
CSS0000482 Camellia sinensis var. sinensis HOM05D008293 ORTHO05D010504 4.1e-118 428.7 341 63.6
Hma1.2p1_2505F.1_g323420 Hydrangea macrophylla HOM05D008293 ORTHO05D010504 1.6e-117 426.8 350 63.1
Atru.chr2.2164 Acer truncatum HOM05D008293 ORTHO05D010504 2.1e-117 426.4 343 63.3
Ciclev10020583m.g Citrus clementina HOM05D008293 ORTHO05D010504 2.7e-117 426.0 348 63.2
COL.COLO4_24863 Corchorus olitorius HOM05D008293 ORTHO05D010504 4.6e-117 425.2 360 61.4
TAR627G0720 Trochodendron aralioides HOM05D008293 ORTHO05D010504 4.6e-117 425.2 356 62.1
Rhsim04G0025400 Rhododendron simsii HOM05D008293 ORTHO05D010504 6.6e-116 421.4 343 63.0
CANSAT35G0405 Cannabis sativa HOM05D008293 ORTHO05D010504 1.9e-115 419.9 340 65.0
Gohir.A13G148900 Gossypium hirsutum HOM05D008293 ORTHO05D010504 6.8e-113 411.4 344 61.3
Gohir.D13G153400 Gossypium hirsutum HOM05D008293 ORTHO05D010504 5.8e-112 408.3 344 61.0
Gorai.013G173300 Gossypium raimondii HOM05D008293 ORTHO05D010504 1.3e-111 407.1 346 61.0
Haze_09337 Corylus avellana HOM05D008293 ORTHO05D010504 2.9e-111 406.0 353 61.8
Nitab4.5_0000246g0170 Nicotiana tabacum HOM05D008293 ORTHO05D010504 2.1e-109 399.8 342 58.8
Migut.M00735 Erythranthe guttata HOM05D008293 ORTHO05D010504 2.7e-109 399.4 342 60.2
PGR083G2613 Punica granatum HOM05D008293 ORTHO05D010504 2.3e-108 396.4 352 60.2
Nitab4.5_0001145g0060 Nicotiana tabacum HOM05D008293 ORTHO05D010504 3.0e-108 396.0 342 58.8
Cc05_g11210 Coffea canephora HOM05D008293 ORTHO05D010504 9.5e-107 391.0 339 59.6
Sopen07g030780 Solanum pennellii HOM05D008293 ORTHO05D010504 9.5e-107 391.0 344 58.7
Peaxi162Scf00069g02232 Petunia axillaris HOM05D008293 ORTHO05D010504 2.1e-106 389.8 362 57.7
PSO782G2569 Papaver somniferum HOM05D008293 ORTHO05D010504 1.4e-105 387.1 355 58.3
CAN.G162.9 Capsicum annuum HOM05D008293 ORTHO05D010504 1.2e-104 384.0 345 57.1
PGSC0003DMG400012428 Solanum tuberosum HOM05D008293 ORTHO05D010504 4.4e-104 382.1 341 58.1
RcHm_v2.0_Chr5g0031411 Rosa chinensis HOM05D008293 ORTHO05D010504 6.0e-101 371.7 201 95.0
Aqoxy4G00368 Aquilegia oxysepala HOM05D008293 ORTHO05D010504 1.1e-97 360.9 339 55.2
AagrBONN_evm.TU.Sc2ySwM_344.4932 Anthoceros agrestis HOM05D008293 ORTHO05D010504 1.8e-97 360.1 347 55.3
Pp3c19_10600 Physcomitrium patens HOM05D008293 ORTHO05D010504 1.4e-89 334.0 340 52.1
Pp3c22_22050 Physcomitrium patens HOM05D008293 ORTHO05D010504 4.0e-89 332.4 339 52.5
Mapoly0032s0102 Marchantia polymorpha HOM05D008293 ORTHO05D010504 1.5e-88 330.5 343 52.8
HPP92_024759 Vanilla planifolia HOM05D008293 ORTHO05D010504 7.6e-88 328.2 347 51.9
Nn1g09105 Nelumbo nucifera HOM05D008293 ORTHO05D010504 7.1e-86 321.6 354 52.3
SMO118G0404 Selaginella moellendorffii HOM05D008293 ORTHO05D010504 3.5e-85 319.3 343 52.8
SGA_v2.0_scaffold55G19705 Striga asiatica HOM05D008293 ORTHO05D010504 1.3e-79 300.8 349 50.4
Ciclev10023335m.g Citrus clementina HOM05D008293 ORTHO05D010504 2.5e-78 296.6 358 49.4
Solyc07g062543.1 Solanum lycopersicum HOM05D008293 ORTHO05D010504 4.6e-77 292.4 258 56.6
RcHm_v2.0_Chr7g0194341 Rosa chinensis HOM05D008293 ORTHO05D010504 8.7e-76 288.1 238 70.2
Lj1A831T70 Lonicera japonica HOM05D008293 ORTHO05D010504 5.8e-72 275.4 255 57.3
SEGI_20639 Sequoiadendron giganteum HOM05D008293 ORTHO05D010504 7.1e-70 268.5 286 52.8
CBR_g40882 Chara braunii HOM05D008293 ORTHO05D010504 3.1e-65 253.1 325 46.2
PRCOL_00003950 Prasinoderma coloniale HOM05D008293 ORTHO05D010504 7.4e-59 231.9 345 40.6
Cpa.g.sc97.100 Carica papaya HOM05D008293 ORTHO05D010504 5.9e-56 222.2 203 58.1
Atru.chr2.2165 Acer truncatum HOM05D003516 ORTHO05D004068 6.1e-53 212.2 186 59.7
AagrBONN_evm.TU.Sc2ySwM_344.893 Anthoceros agrestis HOM05D008293 ORTHO05D010504 5.5e-38 162.5 133 61.7
MD10G1199100 Malus domestica HOM05D008293 ORTHO05D010504 5.9e-32 142.5 172 48.8
Ca_29004_v3 Cicer arietinum L. HOM05D008293 ORTHO05D010504 2.2e-26 124.0 162 43.8
Actinidia35215 Actinidia chinensis HOM05D008293 ORTHO05D010504 1.2e-21 108.2 257 36.6
Solyc07g062547.1 Solanum lycopersicum HOM05D008293 ORTHO05D010504 1.8e-17 94.4 56 80.4
Cfa019577 Carpinus fangiana HOM05D008293 ORTHO05D010504 4.1e-17 93.2 53 81.1
Lj1P831T51 Lonicera japonica HOM05D008293 ORTHO05D010504 3.5e-16 90.1 53 73.6
Ca_29048_v3 Cicer arietinum L. HOM05D008293 ORTHO05D010504 2.3e-12 77.4 98 39.8
SEGI_30761 Sequoiadendron giganteum HOM05D008293 ORTHO05D010504 2.0e-11 74.3 53 64.2
Sopen06g001050 Solanum pennellii HOM05D008293 ORTHO05D023155 3.7e-10 70.1 84 50.0


User provided reference genes

Program Settings