Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0030781 Rosa chinensis HOM05D008148 ORTHO05D010295 1.8e-27 125.2 62 100.0
FAN11G2091 Fragaria x ananassa HOM05D008148 ORTHO05D010295 4.9e-25 117.1 62 90.3
FAN21G2680 Fragaria x ananassa HOM05D008148 ORTHO05D010295 5.4e-24 113.6 62 88.7
FAN25G0037 Fragaria x ananassa HOM05D008148 ORTHO05D010295 8.6e-22 106.3 65 83.1
Prupe.4G163600 Prunus persica HOM05D008148 ORTHO05D010295 3.6e-20 100.9 62 80.6
MD11G1264400 Malus domestica HOM05D008148 ORTHO05D010295 6.2e-20 100.1 63 76.2
Prupe.4G164100 Prunus persica HOM05D008148 ORTHO05D010295 1.2e-18 95.9 63 77.8
CiPaw.11G159800 Carya illinoinensis HOM05D008148 ORTHO05D010295 3.0e-14 81.3 61 59.0
Sabra11G0096700 Salix brachista HOM05D008148 ORTHO05D010295 3.0e-14 81.3 56 71.4
Thecc.07G117800 Theobroma cacao HOM05D008148 ORTHO05D010295 4.3e-13 77.4 51 68.6
Atru.chr2.2119 Acer truncatum HOM05D008148 ORTHO05D010295 5.6e-13 77.0 61 55.7
PGR031G2401 Punica granatum HOM05D008148 ORTHO05D010295 5.6e-13 77.0 57 61.4
MELO3C025654.2 Cucumis melo HOM05D008148 ORTHO05D010295 9.5e-13 76.3 64 54.7
Duzib213G0597 Durio zibethinus HOM05D008148 ORTHO05D010295 9.5e-13 76.3 59 62.7
Potri.011G109100 Populus trichocarpa HOM05D008148 ORTHO05D010295 1.2e-12 75.9 48 72.9
TPR.G16053 Trifolium pratense HOM05D008148 ORTHO05D010295 1.2e-12 75.9 51 62.7
Eucgr.F03276 Eucalyptus grandis HOM05D008148 ORTHO05D010295 2.1e-12 75.1 61 57.4
Sed0019666 Sechium edule HOM05D008148 ORTHO05D010295 2.1e-12 75.1 50 64.0
Actinidia12583 Actinidia chinensis HOM05D008148 ORTHO05D010295 2.8e-12 74.7 52 65.4
Gohir.A01G053800 Gossypium hirsutum HOM05D008148 ORTHO05D010295 4.7e-12 73.9 51 62.7
Gohir.D01G042712 Gossypium hirsutum HOM05D008148 ORTHO05D010295 4.7e-12 73.9 51 62.7
Gorai.002G054100 Gossypium raimondii HOM05D008148 ORTHO05D010295 4.7e-12 73.9 51 62.7
Sc03g0010550 Simmondsia chinensis HOM05D008148 ORTHO05D010295 4.7e-12 73.9 52 69.2
CsaV3_4G032950 Cucumis sativus L. HOM05D008148 ORTHO05D010295 8.1e-12 73.2 50 64.0
Psat5g237240 Pisum sativum HOM05D008148 ORTHO05D010295 1.4e-11 72.4 49 63.3
arahy.Tifrunner.gnm1.ann1.MJJR0W Arachis hypogaea HOM05D008148 ORTHO05D010295 1.8e-11 72.0 52 67.3
Carub.0001s1665 Capsella rubella HOM05D008148 ORTHO05D010295 1.8e-11 72.0 44 68.2
Ca_03959_v3 Cicer arietinum L. HOM05D008148 ORTHO05D010295 1.8e-11 72.0 54 59.3
COL.COLO4_17536 Corchorus olitorius HOM05D008148 ORTHO05D010295 1.8e-11 72.0 62 61.3
Manes.15G095500 Manihot esculenta HOM05D008148 ORTHO05D010295 1.8e-11 72.0 55 61.8
GSVIVG01014187001 Vitis vinifera HOM05D008148 ORTHO05D010295 2.3e-11 71.6 60 61.7
Cpa.g.sc77.20 Carica papaya HOM05D008148 ORTHO05D010295 3.1e-11 71.2 66 53.0
CSS0001630 Camellia sinensis var. sinensis HOM05D008148 ORTHO05D010295 4.0e-11 70.9 62 59.7
ClCG11G017320 Citrullus lanatus HOM05D008148 ORTHO05D010295 5.2e-11 70.5 50 62.0
C08p44200 Brassica napus HOM05D008148 ORTHO05D010295 8.9e-11 69.7 44 65.9
BraA09t41440Z Brassica rapa HOM05D008148 ORTHO05D010295 8.9e-11 69.7 44 63.6
FAN16G1524 Fragaria x ananassa HOM05D008148 ORTHO05D010295 8.9e-11 69.7 37 91.9
Lalb_Chr25g0285821 Lupinus albus HOM05D008148 ORTHO05D010295 8.9e-11 69.7 54 51.9
arahy.Tifrunner.gnm1.ann1.GBF3HF Arachis hypogaea HOM05D008148 ORTHO05D010295 1.2e-10 69.3 48 62.5
A09p60700 Brassica napus HOM05D008148 ORTHO05D010295 1.2e-10 69.3 46 65.2
Medtr2g076020 Medicago truncatula HOM05D008148 ORTHO05D010295 1.2e-10 69.3 50 60.0
Sp1g15050 Schrenkiella parvula HOM05D008148 ORTHO05D010295 1.2e-10 69.3 44 61.4
AL1G29090 Arabidopsis lyrata HOM05D008148 ORTHO05D010295 2.0e-10 68.6 45 66.7
AT1G16916 Arabidopsis thaliana HOM05D008148 ORTHO05D010295 2.0e-10 68.6 45 66.7
BcaC07g41389 Brassica carinata HOM05D008148 ORTHO05D010295 2.0e-10 68.6 44 65.9
CARHR017420 Cardamine hirsuta HOM05D008148 ORTHO05D010295 2.0e-10 68.6 47 59.6
THA.LOC104812318 Tarenaya hassleriana HOM05D008148 ORTHO05D010295 5.8e-10 67.0 46 63.0
Thhalv10009282m.g Eutrema salsugineum HOM05D008148 ORTHO05D010295 1.3e-09 65.9 44 56.8
Lj3g0020996 Lotus japonicus HOM05D008148 ORTHO05D010295 1.3e-09 65.9 54 51.9
Phvul.005G081700 Phaseolus vulgaris HOM05D008148 ORTHO05D010295 2.9e-09 64.7 42 57.1
Glyma.13G269300 Glycine max HOM05D008148 ORTHO05D010295 3.7e-09 64.3 60 48.3
Glyma.12G230300 Glycine max HOM05D008148 ORTHO05D010295 1.4e-08 62.4 47 57.4
Migut.M00719 Erythranthe guttata HOM05D008148 ORTHO05D010295 4.1e-08 60.8 52 61.5
DCAR_013159 Daucus carota HOM05D008148 ORTHO05D010295 7.1e-08 60.1 44 61.4
Atru.chr1.2298 Acer truncatum HOM05D008148 ORTHO05D010295 9.2e-08 59.7 56 48.2
Cc05_g11020 Coffea canephora HOM05D008148 ORTHO05D010295 9.2e-08 59.7 57 47.4
SGA_v2.0_scaffold34G13787 Striga asiatica HOM05D008148 ORTHO05D010295 1.2e-07 59.3 46 58.7
Oeu059259.1 Olea europaea HOM05D008148 ORTHO05D010295 2.1e-07 58.5 60 50.0
SalBow6G6640 Salvia bowleyana HOM05D008148 ORTHO05D010295 4.6e-07 57.4 54 51.9
SalBow7G3203 Salvia bowleyana HOM05D008148 ORTHO05D010295 4.6e-07 57.4 54 51.9
SHI27618 Sapria himalayana HOM05D008148 ORTHO05D010295 3.9e-06 54.3 55 56.4


User provided reference genes

Program Settings