Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 0.0e+00 1135.2 546 100.0
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 4.8e-302 1040.4 539 93.3
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 5.9e-300 1033.5 538 92.8
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 2.5e-298 1028.1 539 92.0
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 3.2e-298 1027.7 539 92.6
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 2.7e-297 1024.6 539 92.4
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 9.5e-274 946.4 546 82.4
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 1.8e-272 942.2 543 82.7
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 3.1e-272 941.4 546 81.5
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 4.0e-272 941.0 543 82.5
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 5.8e-271 937.2 546 82.2
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 8.3e-270 933.3 543 81.4
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 3.2e-269 931.4 544 82.5
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 8.6e-267 923.3 545 81.5
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 3.3e-266 921.4 543 81.6
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 3.3e-266 921.4 545 80.4
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 4.3e-266 921.0 533 82.7
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 3.1e-264 914.8 546 79.9
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.7e-262 909.1 546 80.0
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 2.4e-261 905.2 546 79.3
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 1.3e-259 899.4 545 79.6
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 1.7e-259 899.0 546 79.5
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 2.3e-259 898.7 544 78.7
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 1.5e-258 896.0 545 78.5
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 5.6e-258 894.0 546 79.3
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 7.3e-258 893.6 546 79.3
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 1.6e-257 892.5 584 75.7
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 4.0e-256 887.9 545 78.9
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 8.9e-256 886.7 543 77.7
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 8.9e-256 886.7 543 77.7
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 1.5e-255 885.9 545 78.7
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 2.0e-255 885.6 539 79.2
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 4.4e-255 884.4 533 77.9
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 7.6e-255 883.6 543 77.5
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 9.9e-255 883.2 546 78.0
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 1.3e-254 882.9 546 77.1
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.1e-253 879.8 546 78.2
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 1.1e-253 879.8 595 73.4
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 1.4e-253 879.4 543 77.3
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 1.4e-253 879.4 595 73.3
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 2.4e-253 878.6 533 79.4
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 3.2e-253 878.2 546 76.4
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 3.2e-253 878.2 546 76.4
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 5.4e-253 877.5 544 76.5
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 9.2e-253 876.7 546 76.0
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 3.5e-252 874.8 539 78.3
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 2.3e-251 872.1 543 77.2
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 5.1e-251 870.9 543 77.2
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 1.9e-250 869.0 543 76.8
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 4.3e-250 867.8 545 76.9
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 9.6e-250 866.7 636 69.2
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 2.8e-249 865.1 534 78.7
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 5.2e-248 860.9 537 77.5
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 6.8e-248 860.5 565 74.9
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 6.8e-248 860.5 546 76.9
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 8.9e-248 860.1 543 75.7
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 1.2e-247 859.8 539 77.4
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 3.4e-247 858.2 537 77.3
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 7.6e-247 857.1 545 77.4
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 1.7e-246 855.9 543 76.1
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 4.9e-246 854.4 546 76.0
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 1.1e-245 853.2 543 75.9
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 1.1e-245 853.2 559 74.6
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 5.4e-245 850.9 539 74.6
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 5.4e-245 850.9 543 75.5
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 4.6e-244 847.8 543 75.9
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 7.8e-244 847.0 543 75.5
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 3.0e-243 845.1 533 76.5
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 3.3e-242 841.6 534 75.1
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 2.8e-241 838.6 539 75.7
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 4.8e-241 837.8 566 72.1
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 4.8e-241 837.8 533 75.8
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 1.8e-240 835.9 543 75.5
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 1.8e-240 835.9 543 75.0
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 3.1e-240 835.1 539 74.0
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 3.4e-239 831.6 537 74.1
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 7.4e-234 813.9 539 73.8
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 1.5e-231 806.2 553 73.4
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 1.6e-228 796.2 544 73.0
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 1.6e-228 796.2 599 66.6
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 1.9e-226 789.3 534 69.5
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 5.6e-226 787.7 544 71.3
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 9.0e-224 780.4 454 81.7
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 6.0e-220 767.7 534 68.2
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 6.7e-219 764.2 534 71.0
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 9.0e-216 753.8 545 69.9
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 4.5e-215 751.5 519 71.5
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 7.2e-213 744.2 543 70.0
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.9e-205 719.5 562 66.0
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 2.3e-203 712.6 579 62.3
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 5.3e-200 701.4 757 52.3
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 3.5e-191 672.2 443 73.1
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 1.3e-190 670.2 545 64.0
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 5.0e-190 668.3 539 63.5
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 1.7e-185 653.3 377 82.5
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 1.4e-184 650.2 400 77.0
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 7.0e-184 647.9 538 59.1
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 9.1e-184 647.5 376 82.4
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 1.3e-182 643.7 540 63.0
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 3.2e-181 639.0 372 80.9
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 2.7e-180 636.0 535 57.2
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 3.1e-168 595.9 530 54.3
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 3.5e-151 539.3 497 52.7
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 6.6e-150 535.0 378 66.4
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 4.9e-145 518.8 389 67.6
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 7.8e-143 511.5 490 55.3
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 1.4e-136 490.7 348 64.1
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 1.5e-130 470.7 276 80.8
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 4.8e-124 449.1 220 96.8
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 5.4e-120 435.6 268 78.0
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 1.6e-119 434.1 272 80.9
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 1.8e-115 420.6 624 39.1
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 2.1e-103 380.6 378 57.4
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 7.9e-103 378.6 325 64.3
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 2.1e-79 300.8 401 40.4
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 9.1e-75 285.4 240 61.2
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 1.2e-74 285.0 595 30.9
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.1e-72 278.5 158 82.9
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 2.7e-71 273.9 192 74.0
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 5.7e-69 266.2 165 79.4
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 2.2e-68 264.2 181 69.6
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 1.8e-67 261.2 555 30.5
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 2.0e-61 241.1 154 77.3
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 1.7e-60 238.0 152 75.0
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 8.3e-60 235.7 244 53.7
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 1.6e-58 231.5 144 75.7
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 2.3e-54 217.6 139 76.3
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 4.4e-53 213.4 819 23.3
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 6.6e-49 199.5 266 39.5
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 1.1e-48 198.7 190 55.3
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 1.9e-48 198.0 130 70.0
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 3.3e-48 197.2 152 67.1
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 5.6e-48 196.4 162 58.0
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 4.7e-47 193.4 152 65.8
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 2.7e-42 177.6 109 78.0
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 6.0e-42 176.4 117 71.8
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 8.1e-31 139.4 85 82.4
Rhsim12G0175500 Rhododendron simsii HOM05D005139 ORTHO05D006125 2.0e-21 108.2 114 50.0
Rhsim02G0051300 Rhododendron simsii HOM05D005139 ORTHO05D006125 5.8e-21 106.7 62 75.8
SEGI_13361 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 2.8e-15 87.8 71 60.6
CBR_g34498 Chara braunii HOM05D003088 ORTHO05D006665 3.6e-15 87.4 75 54.7
Rhsim08G0243300 Rhododendron simsii HOM05D005139 ORTHO05D006125 1.1e-11 75.9 44 70.5
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 6.6e-09 66.6 73 47.9
SGA_v2.0_scaffold16G07518 Striga asiatica HOM05D005139 ORTHO05D006125 2.1e-07 61.6 123 31.7
Ciclev10024667m.g Citrus clementina HOM05D005139 ORTHO05D152313 8.1e-07 59.7 58 56.9


User provided reference genes

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