Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 1.3e-297 1025.8 579 100.0
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 1.8e-267 925.6 560 95.2
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 1.6e-223 779.6 576 81.1
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 8.1e-223 777.3 546 84.4
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 3.6e-207 725.3 436 99.3
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 4.5e-205 718.4 437 98.6
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.9e-196 689.1 537 78.6
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 6.9e-190 667.9 445 85.6
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.4e-174 617.1 574 62.0
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 5.9e-157 558.5 568 59.9
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 2.5e-147 526.6 571 54.8
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 9.8e-144 514.6 563 54.2
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 1.2e-138 497.7 565 52.2
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 3.9e-132 476.1 568 52.5
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 1.2e-130 471.1 491 57.4
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 2.8e-130 469.9 571 51.3
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 5.2e-129 465.7 538 50.7
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 3.4e-128 463.0 567 50.8
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 8.3e-127 458.4 539 53.2
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 1.1e-126 458.0 570 50.2
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 5.4e-126 455.7 536 53.9
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 7.8e-125 451.8 563 50.6
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 8.6e-124 448.4 568 54.8
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 2.3e-121 440.3 562 51.6
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 5.8e-120 435.6 567 48.3
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 8.6e-116 421.8 564 47.5
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 1.9e-115 420.6 578 46.7
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 4.3e-115 419.5 565 49.2
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 7.3e-115 418.7 607 46.8
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 2.8e-114 416.8 563 47.1
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 2.8e-114 416.8 587 47.5
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 6.2e-114 415.6 563 49.6
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 8.1e-114 415.2 563 46.2
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 1.4e-113 414.5 567 47.6
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 1.5e-112 411.0 523 48.4
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 5.8e-112 409.1 572 49.0
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 5.8e-112 409.1 574 51.4
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 1.4e-110 404.4 564 46.8
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 3.2e-110 403.3 571 46.6
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.2e-109 401.4 566 48.8
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 1.0e-108 398.3 534 48.7
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 1.1e-107 394.8 572 46.5
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.5e-107 393.7 564 46.1
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 2.5e-107 393.7 571 47.1
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 5.6e-107 392.5 540 48.1
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 8.1e-106 388.7 551 47.2
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.1e-105 388.3 564 45.7
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 2.4e-105 387.1 497 50.5
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 2.4e-105 387.1 535 48.0
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 4.0e-105 386.3 575 48.0
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 5.2e-105 386.0 566 48.4
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.4e-104 383.3 562 46.1
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 4.4e-104 382.9 570 44.4
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 1.3e-103 381.3 561 45.5
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 1.6e-101 374.4 535 46.2
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 3.5e-101 373.2 567 44.3
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 5.1e-100 369.4 540 44.4
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 8.7e-100 368.6 533 45.2
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.1e-99 368.2 533 45.2
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 4.3e-99 366.3 571 42.9
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 1.6e-98 364.4 566 44.7
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 2.8e-98 363.6 563 43.3
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.7e-95 354.4 574 43.2
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 2.9e-95 353.6 550 45.1
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 3.8e-95 353.2 541 44.4
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 1.9e-94 350.9 564 43.6
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 3.2e-94 350.1 572 43.4
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 5.4e-94 349.4 350 57.1
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 7.9e-93 345.5 562 43.2
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 1.3e-92 344.7 567 42.9
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 3.9e-92 343.2 581 43.4
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 5.1e-92 342.8 564 41.7
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 8.7e-92 342.0 591 42.3
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 2.5e-91 340.5 578 42.6
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.1e-89 335.1 551 46.1
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 1.1e-89 335.1 536 42.0
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 1.8e-89 334.3 305 61.3
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 5.3e-89 332.8 536 42.0
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 6.9e-89 332.4 568 42.1
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 9.0e-89 332.0 424 49.3
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 1.2e-88 331.6 561 40.5
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 1.5e-88 331.3 579 40.9
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 2.0e-88 330.9 553 40.7
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 7.6e-88 328.9 563 42.5
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 1.3e-87 328.2 568 43.1
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.9e-86 324.3 463 47.7
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 1.9e-83 314.3 533 42.2
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 2.5e-83 313.9 564 43.3
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 1.5e-80 304.7 564 39.0
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 1.7e-79 301.2 589 39.9
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 4.9e-79 299.7 575 37.9
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 4.6e-77 293.1 576 37.8
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 5.1e-76 289.7 531 38.4
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 3.3e-75 287.0 575 37.4
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.3e-74 285.0 414 46.4
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 2.1e-74 284.3 575 37.4
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 1.1e-73 282.0 531 38.2
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 1.4e-70 271.6 586 36.5
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 5.5e-70 269.6 546 37.2
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.2e-69 268.5 506 37.9
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 1.6e-69 268.1 574 37.1
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 2.1e-69 267.7 573 36.1
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 2.7e-69 267.3 573 36.1
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 2.3e-68 264.2 573 36.5
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 5.1e-68 263.1 536 38.4
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 5.7e-67 259.6 529 37.2
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 5.7e-67 259.6 529 37.2
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 5.7e-67 259.6 289 52.2
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 7.2e-62 242.7 539 36.9
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 1.2e-61 241.9 294 50.7
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 1.0e-60 238.8 431 41.3
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 2.1e-53 214.5 289 45.3
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 6.7e-52 209.5 580 34.8
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 1.1e-49 202.2 567 33.2
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 1.9e-46 191.4 175 73.1
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 3.0e-44 184.1 212 57.1
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 1.7e-39 168.3 470 32.1
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 2.9e-39 167.5 267 41.9
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.4e-35 154.1 329 40.1
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 3.4e-27 127.5 232 40.5
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 9.8e-27 125.9 561 25.7
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 3.5e-24 117.5 563 28.2
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 1.7e-23 115.2 237 36.3
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 8.6e-23 112.8 212 38.2
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.1e-22 112.5 292 34.9
RcHm_v2.0_Chr2g0102431 Rosa chinensis HOM05D002452 ORTHO05D006766 4.4e-19 100.5 143 49.7
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 9.8e-19 99.4 200 36.5
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 6.4e-18 96.7 237 34.6
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 2.3e-15 88.2 229 34.1
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.9e-15 87.4 100 51.0
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 1.5e-14 85.5 104 38.5
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 4.3e-14 84.0 62 61.3
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 9.5e-14 82.8 102 51.0
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 9.5e-14 82.8 102 51.0
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 9.5e-14 82.8 102 51.0
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 9.5e-14 82.8 102 51.0
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 9.5e-14 82.8 102 51.0
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 9.5e-14 82.8 102 51.0
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 5.2e-12 77.0 117 43.6


User provided reference genes

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