Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 2.4e-62 242.3 146 100.0
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 1.4e-46 189.9 175 73.1
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 1.4e-46 189.9 175 73.1
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 4.0e-46 188.3 175 72.6
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 1.2e-45 186.8 175 72.6
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 3.7e-39 165.2 162 69.8
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 3.7e-39 165.2 162 69.8
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 6.9e-38 161.0 141 70.9
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 5.9e-37 157.9 154 70.8
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 6.7e-33 144.4 134 63.4
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 2.2e-31 139.4 150 64.7
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 2.2e-28 129.4 137 58.4
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 3.2e-27 125.6 137 56.2
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 4.7e-26 121.7 136 55.9
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 4.7e-26 121.7 135 57.0
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 1.5e-24 116.7 132 54.5
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 1.5e-24 116.7 144 51.4
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 2.6e-24 115.9 146 48.6
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 7.4e-24 114.4 130 51.5
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 1.3e-23 113.6 135 51.1
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 1.7e-23 113.2 130 53.1
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 3.7e-23 112.1 136 52.9
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 3.7e-23 112.1 128 50.8
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 4.8e-23 111.7 147 48.3
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.1e-22 110.5 129 53.5
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.4e-22 110.2 129 51.2
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.8e-22 109.8 129 51.2
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 3.1e-22 109.0 128 52.3
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 4.1e-22 108.6 129 53.5
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 5.3e-22 108.2 138 50.7
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 7.0e-22 107.8 134 51.5
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 1.5e-21 106.7 149 53.0
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 3.4e-21 105.5 149 51.0
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 3.4e-21 105.5 129 55.8
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 4.5e-21 105.1 131 53.4
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 4.5e-21 105.1 130 50.0
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 1.3e-20 103.6 131 52.7
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 1.7e-20 103.2 120 54.2
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.2e-20 102.8 127 50.4
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 5.0e-20 101.7 118 54.2
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 6.5e-20 101.3 129 62.8
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 8.5e-20 100.9 118 53.4
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 1.1e-19 100.5 127 52.0
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 1.1e-19 100.5 137 48.9
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 1.1e-19 100.5 149 49.0
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 1.4e-19 100.1 128 50.0
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 3.2e-19 99.0 166 43.4
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 5.5e-19 98.2 127 55.9
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 5.5e-19 98.2 107 53.3
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 7.2e-19 97.8 130 51.5
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 7.2e-19 97.8 128 58.6
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 9.4e-19 97.4 138 46.4
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 9.4e-19 97.4 129 53.5
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 2.1e-18 96.3 130 49.2
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 2.7e-18 95.9 131 57.3
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 2.7e-18 95.9 129 49.6
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 2.7e-18 95.9 117 49.6
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 8.0e-18 94.4 130 47.7
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 8.0e-18 94.4 130 49.2
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 8.0e-18 94.4 130 49.2
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 1.0e-17 94.0 134 47.8
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 1.0e-17 94.0 131 48.1
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.8e-17 93.2 135 44.4
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 2.3e-17 92.8 130 46.9
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 2.3e-17 92.8 120 50.0
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 2.3e-17 92.8 135 59.3
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 5.2e-17 91.7 114 57.9
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 5.2e-17 91.7 128 52.3
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 6.7e-17 91.3 134 54.5
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 8.8e-17 90.9 130 46.9
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 1.5e-16 90.1 117 48.7
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 2.6e-16 89.4 132 44.7
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 3.3e-16 89.0 137 43.8
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 4.4e-16 88.6 129 46.5
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 9.7e-16 87.4 162 40.1
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 9.7e-16 87.4 100 51.0
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 1.3e-15 87.0 141 43.3
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 1.3e-15 87.0 128 46.1
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 1.3e-15 87.0 130 48.5
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 2.8e-15 85.9 132 45.5
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 2.8e-15 85.9 137 43.8
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 3.7e-15 85.5 136 43.4
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 3.7e-15 85.5 125 46.4
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 4.8e-15 85.1 128 41.4
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 8.2e-15 84.3 126 46.0
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 8.2e-15 84.3 126 46.0
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 8.2e-15 84.3 126 46.0
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 1.4e-14 83.6 128 45.3
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 1.4e-14 83.6 187 39.0
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 5.3e-14 81.6 115 47.0
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 9.1e-14 80.9 115 47.0
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 9.1e-14 80.9 118 46.6
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 9.1e-14 80.9 118 46.6
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 2.6e-13 79.3 134 42.5
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 5.9e-13 78.2 129 48.1
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 1.3e-12 77.0 146 40.4
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 2.2e-12 76.3 133 50.4
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 3.8e-12 75.5 122 44.3
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 3.8e-12 75.5 128 43.0
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 8.5e-12 74.3 106 45.3
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 4.2e-11 72.0 129 38.8
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 1.2e-10 70.5 146 39.7
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 3.6e-10 68.9 42 78.6
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 6.1e-10 68.2 150 42.0
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 6.7e-09 64.7 145 35.9
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 2.6e-08 62.8 61 60.7
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.3e-07 60.5 68 47.1
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 2.8e-07 59.3 107 42.1


User provided reference genes

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