Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 2.0e-221 772.3 452 100.0
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 3.4e-216 755.0 452 98.9
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 3.5e-205 718.4 437 98.6
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 3.5e-205 718.4 437 98.6
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 2.0e-168 596.3 453 82.6
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 5.8e-168 594.7 453 82.3
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.2e-143 513.1 460 74.3
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 7.7e-136 488.0 352 83.8
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 8.8e-124 448.0 451 60.8
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.0e-108 397.9 445 58.9
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 2.2e-106 390.2 443 55.3
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 7.2e-102 375.2 451 53.9
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 7.5e-99 365.2 451 52.3
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 1.4e-92 344.4 442 50.0
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 1.0e-84 318.2 443 51.0
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 1.8e-84 317.4 443 50.3
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 2.6e-83 313.5 454 49.1
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.7e-82 309.7 445 45.6
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 4.9e-82 309.3 457 48.4
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 1.6e-80 304.3 456 47.1
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 2.7e-80 303.5 440 48.0
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 3.0e-79 300.1 449 48.3
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 3.3e-78 296.6 442 46.2
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 4.7e-77 292.7 443 46.3
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 2.3e-76 290.4 454 52.4
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 4.1e-73 279.6 442 44.6
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 9.2e-73 278.5 448 48.4
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.1e-72 277.3 441 45.1
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 3.5e-72 276.6 451 45.9
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 3.9e-71 273.1 346 53.2
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 8.6e-71 271.9 440 44.5
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 2.8e-69 266.9 446 43.9
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 4.7e-69 266.2 444 44.6
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 4.7e-69 266.2 440 43.0
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 8.1e-69 265.4 494 42.9
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 2.3e-68 263.8 447 46.8
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 8.9e-68 261.9 451 45.7
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 5.8e-67 259.2 451 44.1
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 2.9e-66 256.9 443 49.2
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 8.3e-66 255.4 442 43.7
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 4.1e-65 253.1 457 43.5
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 7.1e-65 252.3 442 43.4
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.5e-64 250.0 441 43.5
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 1.0e-63 248.4 442 46.4
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 1.7e-63 247.7 443 45.6
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 2.3e-63 247.3 445 44.7
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 3.0e-63 246.9 449 43.2
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 3.0e-63 246.9 440 41.8
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.5e-62 244.6 441 43.1
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 1.9e-62 244.2 452 43.1
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.3e-62 243.4 443 45.1
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 6.2e-61 239.2 439 43.5
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 1.1e-60 238.4 374 47.6
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 1.4e-60 238.0 442 41.4
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 3.1e-60 236.9 438 42.5
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 7.6e-59 232.3 480 39.4
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 2.2e-58 230.7 446 41.3
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 2.9e-58 230.3 442 40.3
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 6.4e-58 229.2 442 41.4
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 6.4e-58 229.2 447 39.4
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.1e-54 218.4 455 39.8
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.5e-54 218.0 455 39.8
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 7.3e-54 215.7 446 40.6
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 1.3e-53 214.9 457 40.5
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 1.3e-53 214.9 439 40.1
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 4.8e-53 213.0 438 39.5
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 1.1e-52 211.8 442 39.4
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 2.4e-52 210.7 453 38.9
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 5.3e-52 209.5 443 40.6
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.7e-50 204.5 370 43.0
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 3.8e-50 203.4 229 56.8
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 3.2e-49 200.3 443 37.2
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 3.2e-49 200.3 441 37.6
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 4.2e-49 199.9 456 38.6
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 4.2e-49 199.9 443 37.5
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 4.2e-49 199.9 439 39.6
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.0e-47 195.3 300 46.7
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 1.3e-47 194.9 499 36.7
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.3e-47 194.9 454 42.1
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 3.9e-47 193.4 356 42.1
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 3.9e-47 193.4 485 35.3
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 5.1e-47 193.0 450 39.3
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 8.7e-47 192.2 439 37.4
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 4.3e-46 189.9 175 72.6
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 7.3e-46 189.1 447 35.1
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 6.2e-45 186.0 440 38.0
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 1.1e-44 185.3 212 57.5
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 5.3e-44 183.0 445 39.8
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 4.5e-43 179.9 442 35.5
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.8e-42 176.8 371 41.2
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 2.4e-41 174.1 441 39.7
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 1.2e-40 171.8 441 34.5
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 1.0e-39 168.7 441 34.5
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 3.0e-39 167.2 441 35.1
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 3.3e-38 163.7 441 34.0
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 3.3e-38 163.7 182 57.1
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 1.6e-37 161.4 446 33.4
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 4.8e-37 159.8 475 36.2
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 3.1e-36 157.1 445 32.8
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 9.0e-36 155.6 447 33.8
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 7.6e-35 152.5 439 33.5
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 1.3e-34 151.8 440 34.5
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 1.3e-34 151.8 439 33.5
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 4.9e-34 149.8 370 35.4
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 4.9e-34 149.8 440 34.3
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 4.9e-34 149.8 440 34.3
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 4.9e-34 149.8 440 34.3
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 7.1e-33 146.0 380 36.3
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 1.1e-30 138.7 459 32.0
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 1.9e-30 137.9 442 32.1
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 2.5e-25 120.9 445 32.1
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.8e-23 114.8 292 35.3
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 1.6e-21 108.2 212 37.3
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.8e-21 107.5 166 46.4
RcHm_v2.0_Chr2g0102431 Rosa chinensis HOM05D002452 ORTHO05D006766 2.4e-20 104.4 143 50.3
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 4.1e-20 103.6 225 36.4
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 1.5e-19 101.7 167 45.5
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 1.1e-17 95.5 225 35.1
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 1.9e-17 94.7 237 34.6
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 2.5e-17 94.4 200 36.0
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 7.9e-16 89.4 196 37.8
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 1.0e-15 89.0 156 38.5
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 5.1e-15 86.7 291 35.1
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 5.1e-15 86.7 99 51.5
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 7.4e-14 82.8 457 30.0
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 9.7e-14 82.4 458 28.4
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 9.7e-14 82.4 102 50.0
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 9.7e-14 82.4 102 50.0
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 9.7e-14 82.4 102 50.0
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 9.7e-14 82.4 102 50.0
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 9.7e-14 82.4 102 50.0
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 9.7e-14 82.4 102 50.0
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 5.3e-12 76.6 117 42.7
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 4.2e-09 67.0 373 26.3


User provided reference genes

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