Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 1.2e-172 609.8 322 100.0
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.0e-154 549.3 326 92.0
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 9.9e-154 547.0 328 91.8
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.2e-153 545.8 326 91.7
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.2e-151 540.0 330 91.2
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 1.7e-129 466.5 322 82.0
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 2.0e-122 443.0 337 75.4
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 6.5e-121 438.0 326 73.9
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 1.4e-120 436.8 319 74.3
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 1.9e-120 436.4 273 83.9
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 6.1e-119 431.4 330 71.8
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.8e-118 429.9 317 74.8
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 3.9e-118 428.7 325 72.6
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 8.7e-118 427.6 315 74.0
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 1.9e-117 426.4 326 72.1
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 5.7e-117 424.9 317 74.8
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 9.7e-117 424.1 274 78.8
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 2.2e-116 422.9 259 81.9
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 2.8e-116 422.5 324 71.6
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 3.7e-116 422.2 333 69.4
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 8.2e-116 421.0 316 72.8
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 1.1e-115 420.6 319 73.0
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 4.1e-115 418.7 269 79.9
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 6.9e-115 417.9 321 72.0
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 2.6e-114 416.0 331 70.7
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 3.4e-114 415.6 261 80.8
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.3e-113 413.7 259 81.9
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 1.3e-113 413.7 323 70.6
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 2.9e-113 412.5 315 70.5
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 2.9e-113 412.5 268 79.9
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 3.8e-113 412.1 323 70.0
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 1.1e-112 410.6 263 80.2
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 1.4e-112 410.2 313 71.6
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 1.9e-112 409.8 305 68.9
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 2.5e-112 409.5 283 75.3
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 2.5e-112 409.5 319 72.1
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 3.2e-112 409.1 263 78.3
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 4.2e-112 408.7 288 73.6
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 4.2e-112 408.7 323 69.3
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 5.5e-112 408.3 318 69.5
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.2e-111 407.1 301 71.8
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 1.2e-111 407.1 320 71.2
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 1.6e-111 406.8 318 71.1
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 2.1e-111 406.4 310 71.3
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 6.1e-111 404.8 263 79.5
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 6.1e-111 404.8 302 71.9
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 7.9e-111 404.4 326 69.3
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.4e-110 403.7 311 70.1
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 2.3e-110 402.9 262 78.6
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 3.9e-110 402.1 319 70.8
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 3.9e-110 402.1 343 66.5
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 3.9e-110 402.1 320 68.8
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 6.7e-110 401.4 322 70.2
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 8.8e-110 401.0 257 79.4
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 1.1e-109 400.6 315 69.5
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 3.3e-109 399.1 334 66.8
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 7.4e-109 397.9 305 69.2
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 9.7e-109 397.5 256 78.5
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.3e-108 397.1 252 79.4
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 1.7e-108 396.7 301 70.1
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 6.3e-108 394.8 315 67.0
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 8.2e-108 394.4 256 79.3
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 1.4e-107 393.7 312 68.9
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 1.4e-107 393.7 317 68.5
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 2.4e-107 392.9 336 65.8
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 3.1e-107 392.5 311 68.2
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 5.3e-107 391.7 317 69.4
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 6.9e-107 391.3 267 75.3
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 1.2e-106 390.6 300 70.3
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 2.0e-106 389.8 271 74.2
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 2.0e-106 389.8 267 73.4
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 4.5e-106 388.7 266 83.1
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 5.9e-106 388.3 267 73.0
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 7.7e-106 387.9 267 73.4
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 3.8e-105 385.6 267 72.7
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 5.0e-105 385.2 369 59.1
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 8.5e-105 384.4 267 72.7
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 8.5e-105 384.4 267 72.7
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 1.1e-104 384.0 267 71.5
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 2.5e-104 382.9 299 70.2
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 4.2e-104 382.1 267 71.2
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 7.2e-104 381.3 364 61.5
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 2.1e-103 379.8 267 70.8
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 4.7e-103 378.6 267 70.4
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 4.7e-103 378.6 259 74.1
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 6.1e-103 378.3 275 72.7
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 3.9e-102 375.6 238 82.4
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 3.9e-102 375.6 238 82.4
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 6.7e-102 374.8 326 62.3
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 2.0e-101 373.2 340 62.6
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 2.6e-101 372.9 266 71.4
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 4.4e-101 372.1 277 68.2
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 9.7e-101 370.9 262 71.8
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 8.2e-100 367.9 289 68.9
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 3.8e-97 359.0 265 70.2
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 3.2e-96 355.9 312 65.1
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 1.6e-95 353.6 315 61.3
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 9.7e-93 344.4 472 47.5
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.7e-92 343.6 293 66.6
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 2.8e-92 342.8 249 67.9
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 4.8e-92 342.0 244 71.7
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 7.2e-88 328.2 254 71.3
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 4.0e-86 322.4 255 71.8
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 4.8e-84 315.5 253 69.6
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 5.9e-82 308.5 221 76.5
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 8.5e-81 304.7 199 79.4
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 1.2e-79 300.8 251 58.6
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 2.0e-77 293.5 181 83.4
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 5.7e-77 292.0 245 59.6
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 3.1e-75 286.2 246 58.9
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 9.2e-75 284.6 300 55.0
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 2.7e-74 283.1 289 57.4
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 3.3e-72 276.2 247 55.5
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 1.6e-71 273.9 258 56.6
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 6.1e-71 271.9 259 54.1
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 3.4e-61 239.6 203 65.5
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 1.9e-56 223.8 181 68.0
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 3.6e-55 219.5 242 51.7
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 3.4e-53 213.0 218 57.3
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 1.3e-52 211.1 251 48.6
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 4.9e-52 209.1 216 55.1
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 3.3e-48 196.4 323 42.1
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 4.3e-48 196.1 246 47.2
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 8.1e-47 191.8 148 68.9
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 4.2e-27 126.3 87 75.9
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 1.1e-22 111.7 132 56.1
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 1.2e-21 108.2 145 51.7
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 9.3e-19 98.6 83 63.9
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 2.3e-17 94.0 57 84.2
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 3.0e-17 93.6 53 92.5
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 5.6e-16 89.4 63 66.7
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 7.9e-10 68.9 48 64.6
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 1.5e-08 64.7 42 71.4
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 4.3e-08 63.2 94 41.5
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 5.7e-08 62.8 48 58.3
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 1.1e-06 58.5 208 27.9
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 1.4e-06 58.2 87 42.5
SMO340G0297 Selaginella moellendorffii HOM05D006393 ORTHO05D008088 5.3e-06 56.2 213 27.2


User provided reference genes

Program Settings