Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 1.1e-113 413.3 204 100.0
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.0e-63 247.3 136 86.0
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.7e-63 246.5 155 78.7
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 3.0e-63 245.7 136 85.3
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 7.6e-59 231.1 163 71.2
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 6.2e-53 211.5 192 57.8
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 1.5e-51 206.8 135 74.1
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 5.8e-51 204.9 137 72.3
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.3e-50 203.8 136 76.5
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 2.2e-50 203.0 137 69.3
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 4.9e-50 201.8 142 71.1
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 2.5e-49 199.5 137 67.2
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 4.2e-49 198.7 143 67.1
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 9.3e-49 197.6 137 69.3
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 4.6e-48 195.3 192 53.6
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 7.9e-48 194.5 139 67.6
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 2.3e-47 193.0 137 68.6
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 2.3e-47 193.0 198 51.5
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 3.0e-47 192.6 138 68.1
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 3.9e-47 192.2 140 65.7
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 6.7e-47 191.4 158 63.3
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 1.1e-46 190.7 138 68.8
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 1.5e-46 190.3 135 68.9
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 1.5e-46 190.3 137 67.9
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 1.9e-46 189.9 140 63.6
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 1.9e-46 189.9 137 67.9
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 1.9e-46 189.9 159 62.9
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 2.5e-46 189.5 137 67.9
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 3.3e-46 189.1 138 68.1
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 7.4e-46 188.0 135 67.4
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 7.4e-46 188.0 135 67.4
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 7.4e-46 188.0 137 63.5
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 1.6e-45 186.8 137 64.2
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 2.8e-45 186.0 140 65.7
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 3.7e-45 185.7 137 65.7
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 4.8e-45 185.3 136 67.6
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 4.8e-45 185.3 196 51.0
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 6.3e-45 184.9 137 65.7
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 6.3e-45 184.9 137 65.7
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 6.3e-45 184.9 137 65.0
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 8.2e-45 184.5 137 65.7
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 8.2e-45 184.5 173 56.1
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 8.2e-45 184.5 143 66.4
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 8.2e-45 184.5 137 65.7
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 1.1e-44 184.1 137 65.0
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 1.4e-44 183.7 137 66.4
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 1.8e-44 183.3 137 65.0
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 1.8e-44 183.3 137 65.0
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 1.8e-44 183.3 137 64.2
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 2.4e-44 183.0 144 63.2
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 2.4e-44 183.0 137 65.7
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 3.1e-44 182.6 137 65.0
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 3.1e-44 182.6 139 61.2
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 3.1e-44 182.6 191 50.8
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 3.1e-44 182.6 137 62.8
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 3.1e-44 182.6 137 66.4
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 4.1e-44 182.2 137 65.7
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 6.9e-44 181.4 137 65.7
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 6.9e-44 181.4 137 65.7
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 6.9e-44 181.4 171 53.8
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 9.0e-44 181.0 135 63.0
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.2e-43 180.6 137 62.0
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.5e-43 180.3 137 65.0
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 1.5e-43 180.3 137 65.0
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 2.0e-43 179.9 137 63.5
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 2.6e-43 179.5 137 65.0
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 2.6e-43 179.5 140 65.0
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 3.4e-43 179.1 137 65.0
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 3.4e-43 179.1 137 59.9
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 4.5e-43 178.7 137 62.8
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 4.5e-43 178.7 214 46.7
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 5.9e-43 178.3 137 65.0
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 5.9e-43 178.3 137 65.0
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 1.7e-42 176.8 137 62.0
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 2.2e-42 176.4 137 59.1
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 2.2e-42 176.4 192 51.0
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 3.8e-42 175.6 140 62.1
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 3.8e-42 175.6 142 59.9
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 3.8e-42 175.6 138 61.6
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 1.4e-41 173.7 137 63.5
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 1.4e-41 173.7 140 61.4
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 1.9e-41 173.3 137 60.6
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 2.5e-41 172.9 185 49.7
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 7.2e-41 171.4 158 51.3
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 7.2e-41 171.4 158 51.9
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 9.3e-41 171.0 137 62.8
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 1.6e-40 170.2 144 58.3
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 2.7e-40 169.5 151 57.0
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 3.6e-40 169.1 137 58.4
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 4.6e-40 168.7 137 62.0
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 4.6e-40 168.7 137 62.0
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 7.9e-40 167.9 138 57.2
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 5.1e-39 165.2 138 59.4
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 6.7e-39 164.9 137 59.1
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.9e-38 163.3 137 57.7
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 2.5e-38 162.9 141 53.9
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 9.7e-38 161.0 136 60.3
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 3.7e-37 159.1 134 59.7
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 3.7e-37 159.1 134 59.7
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 3.7e-37 159.1 102 69.6
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 8.2e-37 157.9 172 49.4
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 2.4e-36 156.4 136 58.1
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 6.9e-36 154.8 118 62.7
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 6.9e-36 154.8 137 53.3
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 6.9e-36 154.8 136 57.4
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 4.5e-35 152.1 97 69.1
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 5.9e-35 151.8 105 65.7
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 7.7e-35 151.4 173 49.7
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 1.3e-34 150.6 144 51.4
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 1.3e-34 150.6 105 66.7
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 1.3e-34 150.6 103 60.2
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 8.5e-34 147.9 110 60.9
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 1.9e-33 146.7 111 60.4
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 9.4e-33 144.4 130 56.2
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 1.2e-32 144.1 136 52.9
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 1.8e-31 140.2 102 61.8
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 3.7e-29 132.5 104 56.7
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 1.1e-28 131.0 102 57.8
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 1.0e-26 124.4 139 44.6
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 2.9e-26 122.9 146 45.9
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 8.5e-26 121.3 103 53.4
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 1.1e-25 120.9 112 54.5
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 7.2e-25 118.2 83 66.3
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 1.6e-24 117.1 131 44.3
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 5.3e-12 75.5 136 35.3
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 1.5e-09 67.4 47 66.0
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 2.1e-08 63.5 108 36.1


User provided reference genes

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