Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0029451 Rosa chinensis HOM05D004829 ORTHO05D006212 6.0e-32 140.2 69 100.0
FvH4_3g12850 Fragaria vesca HOM05D004829 ORTHO05D006212 1.3e-26 122.5 69 85.5
FAN11G0705 Fragaria x ananassa HOM05D004829 ORTHO05D006212 1.3e-26 122.5 69 85.5
FAN25G0809 Fragaria x ananassa HOM05D004829 ORTHO05D006212 2.2e-26 121.7 69 84.1
FAN21G1515 Fragaria x ananassa HOM05D004829 ORTHO05D006212 2.9e-26 121.3 69 84.1
RcHm_v2.0_Chr1g0315311 Rosa chinensis HOM05D004829 ORTHO05D006212 3.8e-26 120.9 69 85.5
RcHm_v2.0_Chr1g0315031 Rosa chinensis HOM05D004829 ORTHO05D006212 1.9e-25 118.6 69 84.1
RcHm_v2.0_Chr1g0315541 Rosa chinensis HOM05D004829 ORTHO05D006212 3.2e-25 117.9 69 82.6
RcHm_v2.0_Chr5g0020891 Rosa chinensis HOM05D004829 ORTHO05D006212 4.1e-25 117.5 69 84.1
RcHm_v2.0_Chr1g0315241 Rosa chinensis HOM05D004829 ORTHO05D006212 5.4e-25 117.1 69 82.6
RcHm_v2.0_Chr1g0315381 Rosa chinensis HOM05D004829 ORTHO05D006212 9.2e-25 116.3 69 82.6
RcHm_v2.0_Chr1g0315441 Rosa chinensis HOM05D004829 ORTHO05D006212 2.1e-24 115.2 69 82.6
RcHm_v2.0_Chr5g0020791 Rosa chinensis HOM05D004829 ORTHO05D006212 2.1e-24 115.2 69 81.2
MD10G1228200 Malus domestica HOM05D004829 ORTHO05D006212 2.7e-24 114.8 70 80.0
Carub.0007s2106 Capsella rubella HOM05D004829 ORTHO05D006212 3.5e-24 114.4 69 76.8
Prupe.4G116700 Prunus persica HOM05D004829 ORTHO05D006212 3.5e-24 114.4 70 78.6
CARHR226880 Cardamine hirsuta HOM05D004829 ORTHO05D006212 4.6e-24 114.0 69 76.8
RcHm_v2.0_Chr1g0315061 Rosa chinensis HOM05D004829 ORTHO05D006212 6.0e-24 113.6 70 82.9
AT4G20070 Arabidopsis thaliana HOM05D004829 ORTHO05D006212 7.8e-24 113.2 69 75.4
AL7G33780 Arabidopsis lyrata HOM05D004829 ORTHO05D006212 1.0e-23 112.8 69 73.9
Potri.001G160100 Populus trichocarpa HOM05D004829 ORTHO05D006212 1.7e-23 112.1 69 73.9
Thecc.02G004600 Theobroma cacao HOM05D004829 ORTHO05D006212 2.3e-23 111.7 69 73.9
A03p52300 Brassica napus HOM05D004829 ORTHO05D006212 3.0e-23 111.3 69 75.4
C07p50740 Brassica napus HOM05D004829 ORTHO05D006212 3.0e-23 111.3 69 75.4
BolC7t45575H Brassica oleracea HOM05D004829 ORTHO05D006212 3.0e-23 111.3 69 75.4
BraA03t14305Z Brassica rapa HOM05D004829 ORTHO05D006212 3.0e-23 111.3 69 75.4
Sp7g18530 Schrenkiella parvula HOM05D004829 ORTHO05D006212 3.0e-23 111.3 69 72.5
THA.LOC104811816 Tarenaya hassleriana HOM05D004829 ORTHO05D006212 3.9e-23 110.9 68 75.0
TAR624G1024 Trochodendron aralioides HOM05D004829 ORTHO05D006212 3.9e-23 110.9 69 72.5
CANSAT35G0413 Cannabis sativa HOM05D004829 ORTHO05D006212 5.1e-23 110.5 69 73.9
BcaNung03491 Brassica carinata HOM05D004829 ORTHO05D006212 6.6e-23 110.2 69 72.5
RcHm_v2.0_Chr5g0021441 Rosa chinensis HOM05D004829 ORTHO05D006212 6.6e-23 110.2 66 80.3
Cfa000658 Carpinus fangiana HOM05D004829 ORTHO05D006212 8.6e-23 109.8 69 72.5
Thhalv10024702m.g Eutrema salsugineum HOM05D004829 ORTHO05D006212 8.6e-23 109.8 69 72.5
TWI38G0011 Tripterygium wilfordii HOM05D004829 ORTHO05D006212 8.6e-23 109.8 69 72.5
Aqoxy1G01392 Aquilegia oxysepala HOM05D004829 ORTHO05D006212 1.1e-22 109.4 69 72.5
BcaC06g30644 Brassica carinata HOM05D004829 ORTHO05D006212 1.1e-22 109.4 69 71.0
Manes.16G050400 Manihot esculenta HOM05D004829 ORTHO05D006212 1.1e-22 109.4 69 75.4
Rhsim02G0252000 Rhododendron simsii HOM05D004829 ORTHO05D006212 1.5e-22 109.0 69 73.9
Actinidia33705 Actinidia chinensis HOM05D004829 ORTHO05D006212 1.9e-22 108.6 69 73.9
Gohir.A12G049400 Gossypium hirsutum HOM05D004829 ORTHO05D006212 1.9e-22 108.6 69 69.6
Gohir.D12G047800 Gossypium hirsutum HOM05D004829 ORTHO05D006212 1.9e-22 108.6 69 69.6
Gorai.008G050700 Gossypium raimondii HOM05D004829 ORTHO05D006212 1.9e-22 108.6 69 69.6
QL11p012432 Quercus lobata HOM05D004829 ORTHO05D006212 2.5e-22 108.2 68 73.5
Aa31LG6G2480 Aethionema arabicum HOM05D004829 ORTHO05D006212 3.3e-22 107.8 69 68.1
ClCG03G004200 Citrullus lanatus HOM05D004829 ORTHO05D006212 3.3e-22 107.8 69 71.0
MELO3C002403.2 Cucumis melo HOM05D004829 ORTHO05D006212 3.3e-22 107.8 69 69.6
Sed0007455 Sechium edule HOM05D004829 ORTHO05D006212 3.3e-22 107.8 69 71.0
Ciclev10015120m.g Citrus clementina HOM05D004829 ORTHO05D006212 4.3e-22 107.5 69 69.6
COL.COLO4_18027 Corchorus olitorius HOM05D004829 ORTHO05D006212 4.3e-22 107.5 69 71.0
Haze_06166 Corylus avellana HOM05D004829 ORTHO05D006212 4.3e-22 107.5 69 71.0
CsaV3_1G010130 Cucumis sativus L. HOM05D004829 ORTHO05D006212 4.3e-22 107.5 69 69.6
GSVIVG01012140001 Vitis vinifera HOM05D004829 ORTHO05D006212 4.3e-22 107.5 69 72.5
arahy.Tifrunner.gnm1.ann1.503GVQ Arachis hypogaea HOM05D004829 ORTHO05D006212 5.6e-22 107.1 65 75.4
arahy.Tifrunner.gnm1.ann1.84NU8G Arachis hypogaea HOM05D004829 ORTHO05D006212 5.6e-22 107.1 65 75.4
Glyma.15G156900 Glycine max HOM05D004829 ORTHO05D006212 5.6e-22 107.1 65 75.4
PSO541G1671 Papaver somniferum HOM05D004829 ORTHO05D006212 5.6e-22 107.1 69 71.0
PSO675G5466 Papaver somniferum HOM05D004829 ORTHO05D006212 5.6e-22 107.1 69 71.0
VMungo1309G0038 Vigna mungo HOM05D004829 ORTHO05D006212 5.6e-22 107.1 65 75.4
DCAR_004342 Daucus carota HOM05D004829 ORTHO05D006212 7.3e-22 106.7 69 72.5
Lj6g0020245 Lotus japonicus HOM05D004829 ORTHO05D006212 7.3e-22 106.7 65 75.4
Thhalv10025370m.g Eutrema salsugineum HOM05D004829 ORTHO05D006212 9.6e-22 106.3 68 70.6
Sc05g0004770 Simmondsia chinensis HOM05D004829 ORTHO05D006212 1.2e-21 105.9 69 71.0
Lj1C1148G3 Lonicera japonica HOM05D004829 ORTHO05D006212 1.6e-21 105.5 69 71.0
PGR004G1679 Punica granatum HOM05D004829 ORTHO05D006212 1.6e-21 105.5 69 68.1
RcHm_v2.0_Chr1g0315471 Rosa chinensis HOM05D004829 ORTHO05D006212 1.6e-21 105.5 58 86.2
Duzib132G0434 Durio zibethinus HOM05D004829 ORTHO05D006212 2.1e-21 105.1 69 71.0
ECA246G2495 Erigeron canadensis HOM05D004829 ORTHO05D006212 2.1e-21 105.1 69 72.5
Eucgr.D00017 Eucalyptus grandis HOM05D004829 ORTHO05D006212 2.1e-21 105.1 63 74.6
HanXRQChr12g0378241 Helianthus annuus HOM05D004829 ORTHO05D006212 2.1e-21 105.1 69 72.5
Lalb_Chr15g0083721 Lupinus albus HOM05D004829 ORTHO05D006212 2.1e-21 105.1 65 73.8
Glyma.09G050800 Glycine max HOM05D004829 ORTHO05D006212 2.8e-21 104.8 65 73.8
Dinv02919 Davidia involucrata HOM05D004829 ORTHO05D006212 4.7e-21 104.0 66 72.7
Dinv06747 Davidia involucrata HOM05D004829 ORTHO05D006212 4.7e-21 104.0 66 72.7
Hma1.2p1_0088F.1_g045100 Hydrangea macrophylla HOM05D004829 ORTHO05D006212 4.7e-21 104.0 69 69.6
TWI63G0224 Tripterygium wilfordii HOM05D004829 ORTHO05D006212 4.7e-21 104.0 69 69.6
QL11p012412 Quercus lobata HOM05D004829 ORTHO05D006212 6.2e-21 103.6 66 74.2
Lsat_1_v5_gn_5_44281 Lactuca sativa HOM05D004829 ORTHO05D006212 8.1e-21 103.2 69 71.0
MBI18_g00538_MAGBIO Magnolia biondii HOM05D004829 ORTHO05D006212 8.1e-21 103.2 69 68.1
Lalb_Chr18g0052051 Lupinus albus HOM05D004829 ORTHO05D006212 1.4e-20 102.4 65 72.3
Peaxi162Scf00981g00019 Petunia axillaris HOM05D004829 ORTHO05D006212 1.8e-20 102.1 69 68.1
Medtr2g035405 Medicago truncatula HOM05D004829 ORTHO05D006212 2.4e-20 101.7 65 72.3
Nitab4.5_0000443g0210 Nicotiana tabacum HOM05D004829 ORTHO05D006212 2.4e-20 101.7 69 66.7
Nitab4.5_0000973g0030 Nicotiana tabacum HOM05D004829 ORTHO05D006212 2.4e-20 101.7 69 66.7
RcHm_v2.0_Chr5g0021521 Rosa chinensis HOM05D004829 ORTHO05D006212 2.4e-20 101.7 53 88.7
CSS0024116 Camellia sinensis var. sinensis HOM05D004829 ORTHO05D006212 3.1e-20 101.3 69 68.1
PGSC0003DMG400009430 Solanum tuberosum HOM05D004829 ORTHO05D006212 3.1e-20 101.3 69 68.1
CAN.G883.4 Capsicum annuum HOM05D004829 ORTHO05D006212 5.2e-20 100.5 69 66.7
Sabra01G0132000 Salix brachista HOM05D004829 ORTHO05D006212 5.2e-20 100.5 78 62.8
Atru.chr10.381 Acer truncatum HOM05D004829 ORTHO05D006212 8.9e-20 99.8 69 66.7
Cc09_g05280 Coffea canephora HOM05D004829 ORTHO05D006212 8.9e-20 99.8 66 69.7
Ca_01990_v3 Cicer arietinum L. HOM05D004829 ORTHO05D006212 1.5e-19 99.0 65 70.8
Solyc02g068380.3 Solanum lycopersicum HOM05D004829 ORTHO05D006212 1.5e-19 99.0 62 72.6
Sopen02g017510 Solanum pennellii HOM05D004829 ORTHO05D006212 1.5e-19 99.0 62 72.6
unitig_92.g28192 Utricularia gibba HOM05D004829 ORTHO05D006212 1.5e-19 99.0 69 71.0
ATR0752G197 Amborella trichopoda HOM05D004829 ORTHO05D006212 2.0e-19 98.6 68 61.8
AUR62042800 Chenopodium quinoa HOM05D004829 ORTHO05D006212 2.0e-19 98.6 69 66.7
Hma1.2p1_0088F.1_g045110 Hydrangea macrophylla HOM05D004829 ORTHO05D006212 2.0e-19 98.6 65 69.2
SGA_v2.0_scaffold175G39334 Striga asiatica HOM05D004829 ORTHO05D006212 2.0e-19 98.6 69 63.8
AUR62040483 Chenopodium quinoa HOM05D004829 ORTHO05D006212 2.6e-19 98.2 69 65.2
Migut.M02005 Erythranthe guttata HOM05D004829 ORTHO05D006212 2.6e-19 98.2 69 66.7
RcHm_v2.0_Chr1g0315611 Rosa chinensis HOM05D004829 ORTHO05D006212 4.4e-19 97.4 53 84.9
EL10Ac7g17240 Beta vulgaris HOM05D004829 ORTHO05D006212 5.8e-19 97.1 69 65.2
TPR.G135 Trifolium pratense HOM05D004829 ORTHO05D006212 5.8e-19 97.1 65 69.2
Lalb_Chr02g0154131 Lupinus albus HOM05D004829 ORTHO05D006212 1.7e-18 95.5 61 72.1
SEGI_28835 Sequoiadendron giganteum HOM05D004829 ORTHO05D006212 2.9e-18 94.7 64 67.2
HPP92_026370 Vanilla planifolia HOM05D004829 ORTHO05D006212 3.8e-18 94.4 61 67.2
RcHm_v2.0_Chr1g0315091 Rosa chinensis HOM05D004829 ORTHO05D006212 4.9e-18 94.0 49 87.8
Oeu046922.1 Olea europaea HOM05D004829 ORTHO05D006212 1.4e-17 92.4 69 59.4
RcHm_v2.0_Chr1g0315201 Rosa chinensis HOM05D004829 ORTHO05D006212 2.4e-17 91.7 49 85.7
Hund18001 Selenicereus undatus HOM05D004829 ORTHO05D006212 2.4e-17 91.7 58 70.7
HPP92_016420 Vanilla planifolia HOM05D004829 ORTHO05D006212 7.1e-17 90.1 61 63.9
MSTRG.21238 Avicennia marina HOM05D004829 ORTHO05D006212 1.2e-16 89.4 62 64.5
Zm00001eb389820 Zea mays HOM05D004829 ORTHO05D006212 1.6e-16 89.0 58 67.2
Os06g0665500 Oryza sativa ssp. japonica HOM05D004829 ORTHO05D006212 4.6e-16 87.4 58 67.2
SMO117G0201 Selaginella moellendorffii HOM05D004829 ORTHO05D006212 6.0e-16 87.0 65 61.5
Mapoly0026s0071 Marchantia polymorpha HOM05D004829 ORTHO05D006212 1.7e-15 85.5 63 58.7
Pp3c13_1740 Physcomitrium patens HOM05D004829 ORTHO05D006212 6.2e-13 77.0 56 60.7
Pp3c3_1160 Physcomitrium patens HOM05D004829 ORTHO05D006212 6.2e-13 77.0 56 60.7
AagrBONN_evm.TU.Sc2ySwM_344.4392 Anthoceros agrestis HOM05D004829 ORTHO05D006212 1.4e-12 75.9 60 56.7
Aqoxy1G01394 Aquilegia oxysepala HOM05D004829 ORTHO05D006212 2.4e-12 75.1 69 53.6
Cre13.g580700 Chlamydomonas reinhardtii HOM05D004829 ORTHO05D006212 5.8e-11 70.5 58 55.2
MCO01G784 Micromonas commoda HOM05D004829 ORTHO05D006212 1.3e-10 69.3 55 52.7
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 2.1e-08 62.0 50 48.0
RcHm_v2.0_Chr1g0315141 Rosa chinensis HOM05D004829 ORTHO05D006212 1.8e-07 58.9 29 93.1
RcHm_v2.0_Chr1g0315581 Rosa chinensis HOM05D004829 ORTHO05D006212 1.9e-06 55.5 29 89.7
RcHm_v2.0_Chr1g0315151 Rosa chinensis HOM05D004829 ORTHO05D006212 5.6e-06 53.9 36 69.4


User provided reference genes

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