Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0028181 Rosa chinensis HOM05D008142 ORTHO05D009674 1.9e-92 342.4 167 100.0
FAN21G3515 Fragaria x ananassa HOM05D008142 ORTHO05D009674 6.4e-72 274.2 172 80.2
FvH4_3g16940 Fragaria vesca HOM05D008142 ORTHO05D009674 8.4e-72 273.9 159 83.6
FAN11G1471 Fragaria x ananassa HOM05D008142 ORTHO05D009674 8.4e-72 273.9 159 83.6
FAN16G2943 Fragaria x ananassa HOM05D008142 ORTHO05D009674 3.2e-71 271.9 159 83.0
MD03G1255500 Malus domestica HOM05D008142 ORTHO05D009674 1.4e-37 160.2 192 54.7
Prupe.4G151600 Prunus persica HOM05D008142 ORTHO05D009674 8.2e-35 151.0 190 51.6
QL04p069987 Quercus lobata HOM05D008142 ORTHO05D009674 1.3e-27 127.1 164 48.8
QL04p069966 Quercus lobata HOM05D008142 ORTHO05D009674 1.5e-20 103.6 151 47.7
Cfa019469 Carpinus fangiana HOM05D008142 ORTHO05D009674 1.3e-19 100.5 162 43.2
Haze_08481 Corylus avellana HOM05D008142 ORTHO05D009674 1.2e-17 94.0 165 42.4
Eucgr.F03213 Eucalyptus grandis HOM05D008142 ORTHO05D009674 2.0e-17 93.2 173 42.2
CSS0003990 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 4.5e-17 92.0 174 37.4
Dinv13326 Davidia involucrata HOM05D000230 ORTHO05D000176 1.3e-16 90.5 153 43.8
Nn3g20734 Nelumbo nucifera HOM05D008142 ORTHO05D009674 2.9e-16 89.4 165 38.2
CSS0017983 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 3.8e-16 89.0 174 36.2
CSS0032813 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 2.5e-15 86.3 165 41.8
Nn4g26546 Nelumbo nucifera HOM05D008142 ORTHO05D009674 1.2e-14 84.0 161 36.6
Gohir.D01G033600 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.6e-14 83.6 148 40.5
Gohir.D01G033400 Gossypium hirsutum HOM05D008142 ORTHO05D009674 2.7e-14 82.8 145 39.3
Potri.001G379400 Populus trichocarpa HOM05D008142 ORTHO05D009674 2.7e-14 82.8 161 40.4
Thecc.07G144200 Theobroma cacao HOM05D008142 ORTHO05D009674 2.7e-14 82.8 148 42.6
Dinv26679 Davidia involucrata HOM05D008142 ORTHO05D009674 4.7e-14 82.0 124 48.4
Actinidia35170 Actinidia chinensis HOM05D008142 ORTHO05D009674 6.1e-14 81.6 152 40.8
Gohir.A01G042800 Gossypium hirsutum HOM05D008142 ORTHO05D009674 6.1e-14 81.6 145 39.3
TAR629G2490 Trochodendron aralioides HOM05D008142 ORTHO05D009674 8.0e-14 81.3 163 41.1
Actinidia18850 Actinidia chinensis HOM05D008142 ORTHO05D009674 1.0e-13 80.9 144 40.3
Gorai.002G040900 Gossypium raimondii HOM05D008142 ORTHO05D009674 1.4e-13 80.5 158 39.9
Hma1.2p1_0280F.1_g112890 Hydrangea macrophylla HOM05D008142 ORTHO05D009674 1.4e-13 80.5 172 40.1
Gorai.002G040700 Gossypium raimondii HOM05D008142 ORTHO05D009674 4.0e-13 79.0 148 41.2
Gorai.002G040500 Gossypium raimondii HOM05D008142 ORTHO05D009674 5.2e-13 78.6 145 38.6
Gohir.A01G043000 Gossypium hirsutum HOM05D008142 ORTHO05D009674 8.8e-13 77.8 145 39.3
Gohir.A01G042900 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.2e-12 77.4 151 39.7
Gohir.D01G033700 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.2e-12 77.4 148 39.9
MSTRG.15018 Avicennia marina HOM05D008142 ORTHO05D009674 2.6e-12 76.3 159 35.8
Sabra16G0249900 Salix brachista HOM05D008142 ORTHO05D009674 2.6e-12 76.3 159 38.4
Phvul.005G061600 Phaseolus vulgaris HOM05D012055 ORTHO05D014183 3.3e-12 75.9 163 33.1
RhsimUnG0205200 Rhododendron simsii HOM05D008142 ORTHO05D009674 4.4e-12 75.5 161 36.6
Aqoxy1G01717 Aquilegia oxysepala HOM05D008142 ORTHO05D009674 5.7e-12 75.1 167 35.9
Thecc.07G144400 Theobroma cacao HOM05D008142 ORTHO05D009674 5.7e-12 75.1 149 38.3
Gorai.002G040600 Gossypium raimondii HOM05D008142 ORTHO05D009674 7.5e-12 74.7 149 37.6
COL.COLO4_17432 Corchorus olitorius HOM05D008142 ORTHO05D009674 9.7e-12 74.3 148 40.5
Ciclev10022628m.g Citrus clementina HOM05D008142 ORTHO05D009674 1.3e-11 73.9 145 40.0
Gohir.D01G033500 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.3e-11 73.9 149 37.6
MBI10_g02220_MAGBIO Magnolia biondii HOM05D008142 ORTHO05D009674 1.3e-11 73.9 142 41.5
Gohir.A01G043100 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.7e-11 73.6 148 37.8
Lj3g0014819 Lotus japonicus HOM05D012055 ORTHO05D014183 1.7e-11 73.6 160 33.1
Gorai.002G040800 Gossypium raimondii HOM05D008142 ORTHO05D009674 2.2e-11 73.2 148 37.2
MD11G1276300 Malus domestica HOM05D015893 ORTHO05D019166 1.4e-10 70.5 160 36.2
Oeu001311.1 Olea europaea HOM05D008142 ORTHO05D009674 2.4e-10 69.7 157 35.7
RhsimUnG0205300 Rhododendron simsii HOM05D008142 ORTHO05D009674 2.4e-10 69.7 161 35.4
Lalb_Chr25g0285461 Lupinus albus HOM05D012055 ORTHO05D014183 3.1e-10 69.3 115 37.4
Gohir.A01G043200 Gossypium hirsutum HOM05D008142 ORTHO05D009674 4.1e-10 68.9 158 38.6
VMungo1080G1331 Vigna mungo HOM05D012055 ORTHO05D014183 2.7e-09 66.2 148 31.8
TAR627G0610 Trochodendron aralioides HOM05D008142 ORTHO05D009674 5.9e-09 65.1 72 47.2
Prupe.4G151500 Prunus persica HOM05D015893 ORTHO05D019166 7.7e-09 64.7 153 34.0
MD03G1255600 Malus domestica HOM05D015893 ORTHO05D019166 1.3e-08 63.9 167 33.5
Nitab4.5_0004038g0010 Nicotiana tabacum HOM05D011950 ORTHO05D009674 1.7e-08 63.5 176 33.5
TAR627G0365 Trochodendron aralioides HOM05D008142 ORTHO05D009674 2.9e-08 62.8 151 39.7
Ca_03397_v3 Cicer arietinum L. HOM05D012055 ORTHO05D014183 5.0e-08 62.0 145 34.5
Solyc07g061890.1 Solanum lycopersicum HOM05D011950 ORTHO05D009674 6.5e-08 61.6 173 30.6
Oeu020029.1 Olea europaea HOM05D008142 ORTHO05D009674 8.5e-08 61.2 159 35.8
PGSC0003DMG400007050 Solanum tuberosum HOM05D011950 ORTHO05D009674 8.5e-08 61.2 174 32.8
COL.COLO4_17430 Corchorus olitorius HOM05D008142 ORTHO05D009674 1.1e-07 60.8 137 33.6
MSTRG.6725 Avicennia marina HOM05D008142 ORTHO05D009674 1.5e-07 60.5 153 37.3
Glyma.13G260000 Glycine max HOM05D012055 ORTHO05D014183 1.9e-07 60.1 160 32.5
Sopen07g030160 Solanum pennellii HOM05D011950 ORTHO05D009674 1.9e-07 60.1 175 30.9
ECA236G2480 Erigeron canadensis HOM05D002418 ORTHO05D002572 2.5e-07 59.7 151 30.5
Medtr2g071750 Medicago truncatula HOM05D012055 ORTHO05D014183 2.5e-07 59.7 143 37.8
Glyma.13G260401 Glycine max HOM05D010689 ORTHO05D012855 3.2e-07 59.3 135 37.0
Glyma.15G248000 Glycine max HOM05D012055 ORTHO05D014183 3.2e-07 59.3 163 35.6
Nitab4.5_0020402g0010 Nicotiana tabacum HOM05D011950 ORTHO05D009674 9.4e-07 57.8 177 33.9
Cpa.g.sc714.2 Carica papaya HOM05D008142 ORTHO05D009674 1.6e-06 57.0 102 38.2
MBI07_g26359_MAGBIO Magnolia biondii HOM05D008142 ORTHO05D009674 2.1e-06 56.6 163 29.4
Gorai.002G040400 Gossypium raimondii HOM05D023069 ORTHO05D009674 2.7e-06 56.2 120 40.0
Psat0s1353g0040 Pisum sativum HOM05D012055 ORTHO05D014183 2.7e-06 56.2 144 33.3
TPR.G26651 Trifolium pratense HOM05D012055 ORTHO05D014183 2.7e-06 56.2 152 32.9
Medtr2g071790 Medicago truncatula HOM05D012055 ORTHO05D014183 3.6e-06 55.8 149 31.5
TPR.G26609 Trifolium pratense HOM05D010689 ORTHO05D012855 3.6e-06 55.8 143 35.7
Gohir.D01G033300 Gossypium hirsutum HOM05D023069 ORTHO05D009674 4.7e-06 55.5 120 40.0
Medtr2g071760 Medicago truncatula HOM05D012055 ORTHO05D014183 8.0e-06 54.7 143 33.6
TPR.G26637 Trifolium pratense HOM05D012055 ORTHO05D014183 8.0e-06 54.7 142 32.4


User provided reference genes

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