Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 3.8e-61 238.0 126 100.0
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 4.7e-51 204.5 125 86.4
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 6.2e-51 204.1 125 86.4
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 3.1e-50 201.8 125 85.6
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 9.8e-49 196.8 121 85.1
FvH4_3g16620 Fragaria vesca HOM05D004022 ORTHO05D004090 1.4e-42 176.4 110 85.5
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 6.4e-24 114.4 120 57.5
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 1.1e-15 87.0 117 41.9
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 7.1e-15 84.3 117 44.4
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 7.9e-14 80.9 120 46.7
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 1.0e-13 80.5 118 43.2
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 1.0e-13 80.5 120 46.7
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 3.9e-13 78.6 120 45.8
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 1.5e-12 76.6 114 44.7
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.9e-12 76.3 117 39.3
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.9e-12 76.3 117 39.3
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 7.4e-12 74.3 128 43.0
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 2.1e-11 72.8 113 41.6
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.8e-11 72.4 117 35.9
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 4.8e-11 71.6 115 42.6
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 8.1e-11 70.9 126 42.1
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 8.1e-11 70.9 120 44.2
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 1.1e-10 70.5 126 40.5
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 1.4e-10 70.1 114 41.2
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 2.4e-10 69.3 126 40.5
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 3.1e-10 68.9 120 35.0
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 4.0e-10 68.6 123 35.0
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 4.0e-10 68.6 114 43.0
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 5.3e-10 68.2 123 35.0
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 6.9e-10 67.8 129 40.3
Duzib160G0057 Durio zibethinus HOM05D004022 ORTHO05D004090 6.9e-10 67.8 128 35.2
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 6.9e-10 67.8 110 38.2
Lalb_Chr20g0117911 Lupinus albus HOM05D012904 ORTHO05D004090 9.0e-10 67.4 115 39.1
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 1.2e-09 67.0 124 39.5
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.2e-09 67.0 123 34.1
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.2e-09 67.0 123 34.1
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 1.5e-09 66.6 127 37.8
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 1.5e-09 66.6 117 39.3
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 2.0e-09 66.2 118 36.4
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 2.0e-09 66.2 134 34.3
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 2.0e-09 66.2 110 41.8
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 2.0e-09 66.2 128 38.3
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 2.6e-09 65.9 132 36.4
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 2.6e-09 65.9 122 38.5
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 3.4e-09 65.5 127 35.4
CiPaw.09G122900 Carya illinoinensis HOM05D004022 ORTHO05D004090 3.4e-09 65.5 120 37.5
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 3.4e-09 65.5 124 37.9
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 3.4e-09 65.5 112 41.1
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 5.8e-09 64.7 123 37.4
Glyma.05G140700 Glycine max HOM05D012904 ORTHO05D004090 7.6e-09 64.3 110 38.2
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 7.6e-09 64.3 127 37.0
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 9.9e-09 63.9 128 38.3
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 9.9e-09 63.9 128 38.3
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 9.9e-09 63.9 128 38.3
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 9.9e-09 63.9 133 36.1
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 9.9e-09 63.9 110 39.1
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 9.9e-09 63.9 126 33.3
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 9.9e-09 63.9 43 74.4
Glyma.08G096000 Glycine max HOM05D012904 ORTHO05D004090 9.9e-09 63.9 112 38.4
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 9.9e-09 63.9 113 39.8
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 1.3e-08 63.5 116 39.7
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.7e-08 63.2 113 35.4
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.7e-08 63.2 118 38.1
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.7e-08 63.2 118 38.1
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 1.7e-08 63.2 113 38.9
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 2.2e-08 62.8 125 39.2
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 2.2e-08 62.8 115 33.9
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 2.2e-08 62.8 115 35.7
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 2.2e-08 62.8 123 36.6
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 2.9e-08 62.4 122 37.7
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 3.8e-08 62.0 129 38.0
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 3.8e-08 62.0 129 38.0
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.8e-08 62.0 125 35.2
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 6.4e-08 61.2 118 40.7
Peaxi162Scf00035g00165 Petunia axillaris HOM05D004022 ORTHO05D004090 6.4e-08 61.2 120 35.8
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 8.4e-08 60.8 111 36.9
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 8.4e-08 60.8 129 37.2
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 8.4e-08 60.8 128 36.7
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 8.4e-08 60.8 112 39.3
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 1.1e-07 60.5 129 37.2
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 1.1e-07 60.5 129 37.2
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 1.4e-07 60.1 117 37.6
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 1.4e-07 60.1 117 37.6
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.4e-07 60.1 43 72.1
Gohir.A10G041400 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.4e-07 60.1 115 37.4
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 1.9e-07 59.7 124 37.9
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 1.9e-07 59.7 130 35.4
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 1.9e-07 59.7 120 36.7
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 1.9e-07 59.7 125 37.6
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.9e-07 59.7 122 34.4
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 2.4e-07 59.3 123 37.4
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 2.4e-07 59.3 117 39.3
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 2.4e-07 59.3 119 37.0
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 2.4e-07 59.3 111 35.1
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 3.2e-07 58.9 129 35.7
Ciclev10017188m.g Citrus clementina HOM05D004022 ORTHO05D004090 3.2e-07 58.9 117 37.6
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 3.2e-07 58.9 125 32.8
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 3.2e-07 58.9 122 33.6
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 4.2e-07 58.5 112 33.9
Psat1g188880 Pisum sativum HOM05D012904 ORTHO05D004090 4.2e-07 58.5 114 36.0
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 4.2e-07 58.5 117 37.6
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 9.3e-07 57.4 109 37.6
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 9.3e-07 57.4 123 38.2
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 9.3e-07 57.4 110 32.7
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 9.3e-07 57.4 43 65.1
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 1.2e-06 57.0 113 36.3
unitig_746.g26690 Utricularia gibba HOM05D004022 ORTHO05D004090 1.2e-06 57.0 43 69.8
DCAR_019636 Daucus carota HOM05D004022 ORTHO05D004090 1.6e-06 56.6 49 59.2
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 1.6e-06 56.6 106 34.9
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.6e-06 56.6 112 34.8
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.6e-06 56.6 114 31.6
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 2.1e-06 56.2 78 44.9
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 2.1e-06 56.2 128 35.2
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 2.1e-06 56.2 40 75.0
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 2.7e-06 55.8 128 34.4
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 2.7e-06 55.8 113 36.3
CiPaw.10G091400 Carya illinoinensis HOM05D004022 ORTHO05D004090 2.7e-06 55.8 117 36.8
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 2.7e-06 55.8 113 36.3
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 2.7e-06 55.8 113 36.3
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 3.5e-06 55.5 43 67.4
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 4.6e-06 55.1 30 86.7
Lj4g0014771 Lotus japonicus HOM05D012904 ORTHO05D004090 4.6e-06 55.1 110 34.5
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 4.6e-06 55.1 40 67.5
Lalb_Chr13g0293851 Lupinus albus HOM05D012904 ORTHO05D004090 7.9e-06 54.3 114 34.2


User provided reference genes

Program Settings