Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 2.3e-72 275.4 134 100.0
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 8.5e-67 256.9 126 96.8
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 1.5e-66 256.1 134 94.0
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 3.3e-63 245.0 126 94.4
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 5.0e-59 231.1 116 95.7
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 9.4e-58 226.9 122 92.6
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 9.1e-53 210.3 117 86.3
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 9.1e-53 210.3 117 86.3
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 1.2e-52 209.9 117 86.3
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.2e-52 209.9 117 86.3
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.2e-52 209.9 117 86.3
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 9.4e-50 200.3 126 80.2
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 1.2e-49 199.9 103 93.2
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 2.1e-49 199.1 117 81.2
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 9.8e-47 190.3 115 79.1
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 3.7e-46 188.3 110 80.9
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 6.6e-43 177.6 105 78.1
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 8.6e-43 177.2 116 68.1
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 1.5e-42 176.4 108 77.8
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 1.5e-42 176.4 105 79.0
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 3.3e-42 175.3 112 69.6
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 5.6e-42 174.5 112 68.8
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 5.6e-42 174.5 115 72.2
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 7.2e-42 174.1 105 76.2
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 9.5e-42 173.7 115 72.2
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 2.1e-41 172.6 105 75.2
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 3.6e-41 171.8 105 71.4
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 4.7e-41 171.4 108 74.1
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.0e-40 170.2 105 71.4
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 1.8e-40 169.5 116 66.4
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 2.3e-40 169.1 108 69.4
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 3.0e-40 168.7 104 74.0
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 3.0e-40 168.7 105 68.6
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 5.2e-40 167.9 105 70.5
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 6.8e-40 167.5 111 67.6
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 6.8e-40 167.5 116 66.4
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 8.9e-40 167.2 112 66.1
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.5e-39 166.4 116 66.4
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.5e-39 166.4 116 66.4
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 1.5e-39 166.4 103 73.8
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 3.4e-39 165.2 105 69.5
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 3.4e-39 165.2 121 64.5
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 4.4e-39 164.9 106 70.8
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 5.7e-39 164.5 108 70.4
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 5.7e-39 164.5 102 74.5
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 5.7e-39 164.5 116 65.5
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 7.5e-39 164.1 105 70.5
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 7.5e-39 164.1 105 72.4
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 9.8e-39 163.7 105 65.7
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 1.3e-38 163.3 116 67.2
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 1.3e-38 163.3 105 68.6
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 1.7e-38 162.9 105 68.6
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 1.7e-38 162.9 108 69.4
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 2.2e-38 162.5 105 68.6
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 2.2e-38 162.5 113 62.8
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 2.2e-38 162.5 113 62.8
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 2.2e-38 162.5 105 68.6
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 2.2e-38 162.5 108 69.4
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 2.9e-38 162.2 111 63.1
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 3.7e-38 161.8 117 68.4
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 3.7e-38 161.8 105 67.6
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 4.9e-38 161.4 105 67.6
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 4.9e-38 161.4 105 67.6
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 4.9e-38 161.4 105 67.6
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 4.9e-38 161.4 105 67.6
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 4.9e-38 161.4 105 67.6
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 4.9e-38 161.4 108 71.3
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 6.4e-38 161.0 105 66.7
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 6.4e-38 161.0 105 66.7
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 6.4e-38 161.0 108 68.5
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 6.4e-38 161.0 108 68.5
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 6.4e-38 161.0 105 70.5
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 8.3e-38 160.6 105 67.6
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.8e-37 159.5 101 73.3
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 1.8e-37 159.5 102 71.6
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 2.4e-37 159.1 101 72.3
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 4.1e-37 158.3 119 62.2
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 4.1e-37 158.3 103 68.9
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 5.4e-37 157.9 109 62.4
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 5.4e-37 157.9 105 71.4
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 7.0e-37 157.5 105 71.4
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 7.0e-37 157.5 108 66.7
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 9.2e-37 157.1 108 66.7
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 1.6e-36 156.4 109 66.1
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 1.6e-36 156.4 106 67.0
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 2.7e-36 155.6 108 65.7
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 5.9e-36 154.5 101 72.3
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 5.9e-36 154.5 101 70.3
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 5.9e-36 154.5 108 64.8
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 7.8e-36 154.1 115 62.6
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 1.0e-35 153.7 108 64.8
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 1.3e-35 153.3 110 65.5
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 2.9e-35 152.1 112 61.6
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 6.6e-35 151.0 114 59.6
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 1.1e-34 150.2 108 65.7
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 2.5e-34 149.1 98 64.3
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 2.5e-34 149.1 104 65.4
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 2.5e-34 149.1 116 57.8
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 3.3e-34 148.7 100 69.0
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 9.5e-34 147.1 118 61.0
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 1.2e-33 146.7 117 64.1
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 1.2e-33 146.7 117 64.1
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 1.0e-27 127.1 102 58.8
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 3.9e-27 125.2 86 68.6
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 2.8e-25 119.0 88 63.6
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 1.2e-23 113.6 70 70.0
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 9.8e-23 110.5 73 69.9
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 2.1e-20 102.8 100 51.0
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 2.1e-20 102.8 100 51.0
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 5.1e-19 98.2 105 51.4
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 5.1e-19 98.2 105 51.4
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 5.1e-19 98.2 105 51.4
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 5.1e-19 98.2 105 51.4
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 5.1e-19 98.2 105 51.4
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 1.9e-18 96.3 67 68.7
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 6.2e-17 91.3 60 76.7
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 6.2e-17 91.3 76 52.6
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 1.5e-15 86.7 102 45.1
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 2.9e-14 82.4 93 44.1
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 8.4e-14 80.9 55 63.6
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 1.9e-13 79.7 51 64.7
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 3.2e-13 79.0 52 63.5
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 4.1e-13 78.6 51 62.7
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 4.1e-13 78.6 51 62.7
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 7.1e-13 77.8 51 62.7
FAN23G0919 Fragaria x ananassa HOM05D001733 ORTHO05D001882 4.6e-12 75.1 50 74.0
arahy.Tifrunner.gnm1.ann1.BIR89S Arachis hypogaea HOM05D001903 ORTHO05D001847 1.6e-09 66.6 75 44.0
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 3.1e-08 62.4 47 59.6
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 5.2e-08 61.6 40 65.0
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 6.8e-08 61.2 40 65.0
Mapoly0051s0114 Marchantia polymorpha HOM05D052641 ORTHO05D001882 4.4e-07 58.5 46 54.3
arahy.Tifrunner.gnm1.ann1.897E8M Arachis hypogaea HOM05D001733 ORTHO05D001882 7.6e-07 57.8 39 56.4
HanXRQChr05g0139891 Helianthus annuus HOM05D001733 ORTHO05D001882 8.4e-06 54.3 42 61.9


User provided reference genes

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