Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0026981 Rosa chinensis HOM05D006200 ORTHO05D007569 1.4e-40 169.1 82 100.0
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 1.8e-11 72.4 37 81.1
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 1.8e-11 72.4 73 49.3
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 6.9e-11 70.5 37 81.1
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 6.9e-11 70.5 37 81.1
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 6.9e-11 70.5 37 81.1
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 6.9e-11 70.5 37 78.4
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 1.2e-10 69.7 37 75.7
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 1.2e-10 69.7 37 75.7
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 2.0e-10 68.9 37 78.4
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 2.0e-10 68.9 37 78.4
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 2.0e-10 68.9 37 78.4
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 2.0e-10 68.9 37 78.4
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 2.0e-10 68.9 37 81.1
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 4.5e-10 67.8 37 73.0
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 5.8e-10 67.4 37 75.7
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 7.6e-10 67.0 37 70.3
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 1.0e-09 66.6 37 70.3
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 1.0e-09 66.6 37 75.7
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 1.0e-09 66.6 37 75.7
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 1.3e-09 66.2 37 75.7
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 1.3e-09 66.2 37 75.7
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 1.3e-09 66.2 37 75.7
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 1.7e-09 65.9 37 73.0
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 1.7e-09 65.9 37 73.0
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 1.7e-09 65.9 37 75.7
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 1.7e-09 65.9 37 73.0
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 1.7e-09 65.9 37 70.3
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 1.7e-09 65.9 37 70.3
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 2.2e-09 65.5 37 70.3
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 2.2e-09 65.5 37 75.7
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 2.2e-09 65.5 37 75.7
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 2.2e-09 65.5 37 75.7
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 2.2e-09 65.5 37 73.0
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 2.9e-09 65.1 37 70.3
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 2.9e-09 65.1 37 67.6
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 2.9e-09 65.1 37 73.0
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 3.8e-09 64.7 37 70.3
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 3.8e-09 64.7 37 73.0
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 3.8e-09 64.7 37 70.3
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 3.8e-09 64.7 37 70.3
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 3.8e-09 64.7 37 70.3
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 5.0e-09 64.3 37 70.3
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 5.0e-09 64.3 37 75.7
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 5.0e-09 64.3 37 70.3
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 6.5e-09 63.9 37 70.3
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 6.5e-09 63.9 37 73.0
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 6.5e-09 63.9 36 75.0
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 8.4e-09 63.5 37 75.7
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 1.1e-08 63.2 37 73.0
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 1.1e-08 63.2 37 70.3
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 1.9e-08 62.4 37 70.3
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 1.9e-08 62.4 37 70.3
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 1.9e-08 62.4 37 70.3
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 1.9e-08 62.4 37 70.3
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 1.9e-08 62.4 37 70.3
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 1.9e-08 62.4 37 70.3
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.9e-08 62.4 37 70.3
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.9e-08 62.4 37 70.3
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.9e-08 62.4 37 70.3
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 1.9e-08 62.4 36 72.2
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 1.9e-08 62.4 37 70.3
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 1.9e-08 62.4 37 70.3
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 1.9e-08 62.4 37 64.9
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 1.9e-08 62.4 37 70.3
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 1.9e-08 62.4 36 72.2
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 2.5e-08 62.0 42 66.7
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 2.5e-08 62.0 37 67.6
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 2.5e-08 62.0 37 67.6
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 2.5e-08 62.0 37 70.3
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 2.5e-08 62.0 37 67.6
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 3.2e-08 61.6 37 67.6
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 3.2e-08 61.6 37 70.3
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 4.2e-08 61.2 37 67.6
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 4.2e-08 61.2 37 67.6
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 4.2e-08 61.2 37 67.6
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 4.2e-08 61.2 37 67.6
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 4.2e-08 61.2 37 67.6
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 4.2e-08 61.2 37 67.6
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 4.2e-08 61.2 37 67.6
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 5.5e-08 60.8 37 67.6
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 5.5e-08 60.8 37 73.0
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 5.5e-08 60.8 37 64.9
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 5.5e-08 60.8 37 67.6
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 5.5e-08 60.8 37 64.9
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 7.1e-08 60.5 37 67.6
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 9.3e-08 60.1 37 67.6
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 9.3e-08 60.1 37 67.6
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 1.2e-07 59.7 37 64.9
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 1.2e-07 59.7 37 64.9
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 1.2e-07 59.7 37 67.6
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 1.2e-07 59.7 35 68.6
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 7.9e-07 57.0 37 62.2
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 1.8e-06 55.8 37 64.9
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 1.8e-06 55.8 37 64.9
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 1.8e-06 55.8 37 64.9
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 2.3e-06 55.5 33 69.7
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 2.3e-06 55.5 32 71.9
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 6.7e-06 53.9 37 62.2


User provided reference genes

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