Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 1.7e-114 416.0 205 100.0
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 6.4e-106 387.5 205 93.2
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 6.0e-104 380.9 205 92.7
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 3.6e-101 371.7 222 86.0
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 2.8e-93 345.5 203 83.3
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 3.5e-88 328.6 192 83.9
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 5.1e-87 324.7 206 76.7
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 8.7e-87 323.9 204 76.5
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 1.5e-86 323.2 205 75.1
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 4.3e-86 321.6 203 76.8
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 2.8e-85 318.9 203 77.3
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 3.6e-85 318.5 205 76.1
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 6.2e-85 317.8 204 75.0
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 8.1e-85 317.4 203 74.9
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 1.1e-84 317.0 204 76.0
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 3.1e-84 315.5 197 75.1
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 5.3e-84 314.7 211 74.4
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 1.2e-83 313.5 202 73.8
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 1.2e-83 313.5 205 74.1
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 2.6e-83 312.4 206 73.8
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 3.4e-83 312.0 209 71.8
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 3.4e-83 312.0 205 74.1
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 4.5e-83 311.6 205 73.2
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 4.5e-83 311.6 198 75.3
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 5.8e-83 311.2 201 75.1
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 1.7e-82 309.7 205 73.2
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 4.9e-82 308.1 199 75.4
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 6.4e-82 307.8 203 71.4
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 1.1e-81 307.0 199 74.4
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 1.9e-81 306.2 199 71.4
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 1.9e-81 306.2 198 74.2
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 1.9e-81 306.2 198 74.2
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 1.6e-80 303.1 202 72.8
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 2.7e-80 302.4 199 73.4
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 6.0e-80 301.2 194 75.8
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 1.8e-79 299.7 201 74.1
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 2.3e-79 299.3 201 73.6
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 3.0e-79 298.9 201 69.7
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 8.7e-79 297.4 201 70.1
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 2.5e-78 295.8 203 68.5
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 5.6e-78 294.7 199 68.8
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 9.6e-78 293.9 201 69.7
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 2.8e-77 292.4 201 69.2
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 2.8e-77 292.4 201 69.2
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 2.8e-77 292.4 203 68.5
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 4.8e-77 291.6 192 75.0
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 1.1e-76 290.4 194 72.2
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 1.1e-76 290.4 202 69.3
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 3.1e-76 288.9 201 67.7
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 4.0e-76 288.5 204 70.1
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 2.6e-75 285.8 204 67.2
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 2.6e-75 285.8 221 65.2
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 3.4e-75 285.4 201 67.2
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 9.9e-75 283.9 201 66.7
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 1.3e-74 283.5 204 66.7
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 2.2e-74 282.7 203 67.5
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 2.9e-74 282.3 200 68.5
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 4.9e-74 281.6 218 65.1
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 8.4e-74 280.8 201 67.2
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 1.4e-73 280.0 201 66.2
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 3.2e-73 278.9 201 64.2
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 7.1e-73 277.7 200 68.5
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 7.1e-73 277.7 175 77.1
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 7.9e-72 274.2 198 67.2
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 8.7e-71 270.8 188 67.6
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 1.5e-70 270.0 197 66.0
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 1.9e-70 269.6 190 66.8
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 1.6e-69 266.5 196 63.3
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 2.1e-69 266.2 180 72.2
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 2.8e-69 265.8 232 56.0
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 2.8e-69 265.8 200 66.5
FAN25G3578 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.5e-67 260.0 139 92.1
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 4.5e-67 258.5 201 62.7
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 5.8e-67 258.1 208 60.6
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 1.7e-66 256.5 205 67.8
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 3.8e-66 255.4 191 64.9
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 4.9e-66 255.0 203 61.6
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 6.5e-66 254.6 201 62.7
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 8.4e-66 254.2 166 72.9
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 7.1e-65 251.1 204 62.3
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 2.5e-62 242.7 203 60.1
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 3.3e-62 242.3 202 59.4
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 3.2e-57 225.7 158 66.5
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 1.6e-56 223.4 157 68.2
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 7.9e-56 221.1 190 57.4
Prupe.4G141800 Prunus persica HOM05D006956 ORTHO05D008824 3.0e-55 219.2 124 87.9
Sed0013658 Sechium edule HOM05D006956 ORTHO05D008824 2.5e-54 216.1 153 69.9
Actinidia35432 Actinidia chinensis HOM05D006956 ORTHO05D008824 1.2e-48 197.2 147 69.4
MD17G1180100 Malus domestica HOM05D006956 ORTHO05D008824 3.6e-48 195.7 128 78.9
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 1.4e-44 183.7 128 68.0
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 1.4e-44 183.7 128 68.0
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 1.8e-44 183.3 180 47.2
Prupe.4G139100 Prunus persica HOM05D006956 ORTHO05D008824 6.9e-44 181.4 163 62.0
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 1.1e-41 174.1 166 54.8
SMO340G0149 Selaginella moellendorffii HOM05D006956 ORTHO05D008824 9.4e-41 171.0 186 44.1
FAN16G1261 Fragaria x ananassa HOM05D006956 ORTHO05D008824 2.3e-39 166.4 115 76.5
Pp3c4_6830 Physcomitrium patens HOM05D006956 ORTHO05D008824 1.1e-38 164.1 195 43.1
Pp3c4_6840 Physcomitrium patens HOM05D006956 ORTHO05D008824 2.9e-34 149.4 191 37.7
SEGI_37897 Sequoiadendron giganteum HOM05D006956 ORTHO05D008824 1.1e-33 147.5 130 53.8
vmacro22747 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 1.1e-28 131.0 180 43.3
Mapoly0023s0023 Marchantia polymorpha HOM05D006956 ORTHO05D008824 1.4e-28 130.6 127 48.0
Lju41A37T48 Lonicera japonica HOM05D006956 ORTHO05D008824 3.8e-26 122.5 84 65.5
MBI18_g44288_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 2.7e-24 116.3 76 73.7
vmacro09782 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 4.7e-24 115.5 67 77.6
Potri.011G142501 Populus trichocarpa HOM05D006956 ORTHO05D008824 4.0e-23 112.5 92 60.9
ATR0753G159 Amborella trichopoda HOM05D006956 ORTHO05D008824 7.5e-22 108.2 80 63.8
Glyma.08G170300 Glycine max HOM05D006956 ORTHO05D008824 9.8e-22 107.8 157 42.7
MD05G1220700 Malus domestica HOM05D006956 ORTHO05D008824 1.1e-20 104.4 89 58.4
Cre13.g575333 Chlamydomonas reinhardtii HOM05D006956 ORTHO05D008824 5.4e-20 102.1 180 36.1
RcHm_v2.0_Chr5g0031421 Rosa chinensis HOM05D006956 ORTHO05D008824 1.2e-19 100.9 111 58.6
Cpa.g.sc67.70 Carica papaya HOM05D006956 ORTHO05D008824 1.3e-13 80.9 64 60.9
Lalb_Chr25g0284921 Lupinus albus HOM05D006956 ORTHO05D008824 3.1e-12 76.3 160 34.4
SHI21449 Sapria himalayana HOM05D000257 ORTHO05D008466 4.3e-09 65.9 40 70.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 4.7e-08 62.4 171 26.3
MCO02G468 Micromonas commoda HOM05D006956 ORTHO05D008824 1.0e-07 61.2 85 42.4
Lju41A37T47 Lonicera japonica HOM05D006956 ORTHO05D008824 1.8e-07 60.5 53 54.7
TPR.G22507 Trifolium pratense HOM05D006956 ORTHO05D008824 8.9e-07 58.2 36 72.2


User provided reference genes

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