Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 3.9e-78 294.7 143 100.0
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 1.5e-66 256.1 205 67.8
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 3.3e-61 238.4 205 64.4
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 7.4e-61 237.3 205 64.4
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.0e-57 226.9 222 59.5
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 8.0e-55 217.2 203 58.6
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 9.1e-51 203.8 203 54.7
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 1.2e-50 203.4 204 53.4
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 1.6e-50 203.0 205 53.2
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 2.7e-50 202.2 206 54.4
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 7.7e-50 200.7 204 53.9
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 1.0e-49 200.3 202 53.5
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 2.9e-49 198.7 203 52.7
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 5.0e-49 198.0 205 54.1
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 1.1e-48 196.8 205 52.7
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 1.5e-48 196.4 206 53.4
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 1.9e-48 196.1 209 52.6
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 2.5e-48 195.7 205 53.7
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 2.5e-48 195.7 203 53.7
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 2.5e-48 195.7 192 56.2
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 7.2e-48 194.1 204 53.4
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 9.4e-48 193.7 205 52.7
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 9.4e-48 193.7 201 53.7
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 2.1e-47 192.6 211 52.6
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 2.7e-47 192.2 197 52.8
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 2.7e-47 192.2 199 53.8
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 4.7e-47 191.4 198 52.0
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 4.7e-47 191.4 198 52.0
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 4.7e-47 191.4 198 52.0
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 8.0e-47 190.7 201 54.2
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 1.0e-46 190.3 203 49.8
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 3.0e-46 188.7 205 52.2
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 8.8e-46 187.2 199 50.3
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 1.2e-45 186.8 199 51.3
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 1.2e-45 186.8 201 48.8
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 2.0e-45 186.0 202 51.5
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 2.0e-45 186.0 203 48.8
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 4.4e-45 184.9 201 48.8
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 5.7e-45 184.5 199 51.3
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 9.8e-45 183.7 201 49.3
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 9.8e-45 183.7 201 49.3
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 1.3e-44 183.3 194 53.1
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 1.3e-44 183.3 199 48.2
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 2.8e-44 182.2 201 48.3
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 2.8e-44 182.2 192 54.2
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 3.7e-44 181.8 201 48.8
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 8.3e-44 180.6 203 48.3
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 1.4e-43 179.9 204 48.5
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 1.4e-43 179.9 202 49.0
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 1.8e-43 179.5 201 51.7
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 2.4e-43 179.1 204 48.5
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 5.4e-43 177.9 201 47.3
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 7.0e-43 177.6 204 48.0
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 1.6e-42 176.4 221 46.2
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 3.5e-42 175.3 194 49.0
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 4.5e-42 174.9 203 48.3
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 5.9e-42 174.5 201 47.8
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 1.0e-41 173.7 201 47.3
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 1.3e-41 173.3 218 45.0
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 1.7e-41 172.9 201 46.8
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 6.5e-41 171.0 200 48.5
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 3.3e-40 168.7 200 48.0
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 4.2e-40 168.3 198 47.5
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 7.2e-40 167.5 201 43.8
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 4.7e-39 164.9 197 46.2
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 4.0e-38 161.8 175 52.6
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 5.2e-38 161.4 198 46.5
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 8.9e-38 160.6 190 46.3
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 1.5e-37 159.8 203 45.3
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 3.4e-37 158.7 188 46.3
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 7.5e-37 157.5 232 38.4
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 7.5e-37 157.5 204 45.6
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 1.7e-36 156.4 196 44.4
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 3.7e-36 155.2 191 45.5
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 4.9e-36 154.8 208 43.3
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 2.4e-35 152.5 201 43.8
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 4.1e-35 151.8 203 43.3
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 7.0e-35 151.0 180 47.2
vmacro22747 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 2.3e-33 146.0 119 63.0
FAN16G1261 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.1e-32 143.7 77 92.2
FAN25G3578 Fragaria x ananassa HOM05D006956 ORTHO05D008824 2.5e-32 142.5 75 94.7
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 1.6e-31 139.8 202 41.1
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 3.6e-31 138.7 166 45.8
Prupe.4G141800 Prunus persica HOM05D006956 ORTHO05D008824 1.8e-30 136.3 75 89.3
vmacro09782 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 5.2e-30 134.8 133 54.9
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 6.8e-30 134.4 190 40.0
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 1.4e-27 126.7 158 44.3
Lju41A37T48 Lonicera japonica HOM05D006956 ORTHO05D008824 1.3e-25 120.2 76 72.4
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 8.6e-25 117.5 157 44.6
MBI18_g44288_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 9.5e-24 114.0 77 71.4
Sed0013658 Sechium edule HOM05D006956 ORTHO05D008824 1.2e-23 113.6 76 75.0
Actinidia35432 Actinidia chinensis HOM05D006956 ORTHO05D008824 1.1e-22 110.5 84 67.9
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 4.4e-21 105.1 81 60.5
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 4.4e-21 105.1 81 60.5
MD17G1180100 Malus domestica HOM05D006956 ORTHO05D008824 1.3e-20 103.6 54 92.6
Lalb_Chr25g0284921 Lupinus albus HOM05D006956 ORTHO05D008824 2.2e-20 102.8 98 54.1
ATR0753G159 Amborella trichopoda HOM05D006956 ORTHO05D008824 3.7e-20 102.1 72 68.1
SMO340G0149 Selaginella moellendorffii HOM05D006956 ORTHO05D008824 1.4e-19 100.1 186 32.3
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 1.9e-19 99.8 180 31.7
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 2.4e-19 99.4 163 36.8
Glyma.08G170300 Glycine max HOM05D006956 ORTHO05D008824 4.1e-19 98.6 100 52.0
Potri.011G142501 Populus trichocarpa HOM05D006956 ORTHO05D008824 1.6e-18 96.7 69 69.6
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 6.0e-18 94.7 75 66.7
Prupe.4G139100 Prunus persica HOM05D006956 ORTHO05D008824 1.3e-17 93.6 131 46.6
SEGI_37897 Sequoiadendron giganteum HOM05D006956 ORTHO05D008824 1.9e-16 89.7 65 64.6
RcHm_v2.0_Chr5g0031421 Rosa chinensis HOM05D006956 ORTHO05D008824 3.3e-16 89.0 74 63.5
Pp3c4_6830 Physcomitrium patens HOM05D006956 ORTHO05D008824 6.2e-15 84.7 195 32.3
Pp3c4_6840 Physcomitrium patens HOM05D006956 ORTHO05D008824 2.6e-13 79.3 191 27.2
Cre13.g575333 Chlamydomonas reinhardtii HOM05D006956 ORTHO05D008824 2.5e-08 62.8 64 45.3
SHI21449 Sapria himalayana HOM05D000257 ORTHO05D008466 2.5e-08 62.8 40 67.5
Mapoly0023s0023 Marchantia polymorpha HOM05D006956 ORTHO05D008824 1.2e-07 60.5 64 43.8
TPR.G22507 Trifolium pratense HOM05D006956 ORTHO05D008824 5.2e-06 55.1 35 71.4


User provided reference genes

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