Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0395011 Rosa chinensis HOM05D002529 ORTHO05D002664 1.2e-28 129.0 61 100.0
RcHm_v2.0_Chr5g0025491 Rosa chinensis HOM05D002529 ORTHO05D002664 1.2e-28 129.0 61 100.0
RcHm_v2.0_Chr1g0319871 Rosa chinensis HOM05D002529 ORTHO05D002664 7.9e-28 126.3 61 96.7
RcHm_v2.0_Chr6g0306671 Rosa chinensis HOM05D000308 ORTHO05D000194 1.1e-26 122.5 57 100.0
FAN18G2811 Fragaria x ananassa HOM05D002529 ORTHO05D002664 1.2e-15 85.9 54 74.1
RcHm_v2.0_Chr1g0334081 Rosa chinensis HOM05D002529 ORTHO05D002664 2.6e-15 84.7 55 72.7
RcHm_v2.0_Chr5g0076411 Rosa chinensis HOM05D002529 ORTHO05D002664 3.4e-15 84.3 54 72.2
FvH4_5g30310 Fragaria vesca HOM05D002529 ORTHO05D002664 1.3e-14 82.4 51 74.5
FAN13G2107 Fragaria x ananassa HOM05D002529 ORTHO05D002664 1.3e-14 82.4 51 74.5
MD03G1029600 Malus domestica HOM05D002529 ORTHO05D002664 3.8e-14 80.9 54 68.5
FAN08G0687 Fragaria x ananassa HOM05D002529 ORTHO05D002664 2.5e-13 78.2 51 70.6
Prupe.6G025700 Prunus persica HOM05D002529 ORTHO05D002664 7.9e-12 73.2 50 62.0
Prupe.6G337800 Prunus persica HOM05D002529 ORTHO05D002664 8.8e-11 69.7 50 64.0
CSS0013639 Camellia sinensis var. sinensis HOM05D002529 ORTHO05D002664 1.5e-10 68.9 49 59.2
Lj4g0005583 Lotus japonicus HOM05D002529 ORTHO05D002664 7.4e-10 66.6 50 62.0
ClCG11G014280 Citrullus lanatus HOM05D002529 ORTHO05D002664 1.7e-09 65.5 53 56.6
MD12G1235200 Malus domestica HOM05D002529 ORTHO05D002664 1.7e-09 65.5 50 58.0
Dinv05119 Davidia involucrata HOM05D002529 ORTHO05D002664 2.2e-09 65.1 49 55.1
Lalb_Chr04g0264001 Lupinus albus HOM05D002529 ORTHO05D002664 2.2e-09 65.1 50 54.0
MD04G1217800 Malus domestica HOM05D002529 ORTHO05D002664 2.2e-09 65.1 50 58.0
ClCG05G009860 Citrullus lanatus HOM05D002529 ORTHO05D002664 2.8e-09 64.7 49 61.2
Lj1g0004297 Lotus japonicus HOM05D002529 ORTHO05D002664 2.8e-09 64.7 47 61.7
TAR636G3415 Trochodendron aralioides HOM05D002529 ORTHO05D002664 2.8e-09 64.7 52 51.9
CiPaw.08G178400 Carya illinoinensis HOM05D002529 ORTHO05D002664 3.7e-09 64.3 50 54.0
Rhsim05G0150200 Rhododendron simsii HOM05D002529 ORTHO05D002664 3.7e-09 64.3 54 51.9
MELO3C003557.2 Cucumis melo HOM05D002529 ORTHO05D002664 4.8e-09 63.9 49 59.2
Sed0025735 Sechium edule HOM05D002529 ORTHO05D002664 4.8e-09 63.9 57 50.9
Actinidia33839 Actinidia chinensis HOM05D002529 ORTHO05D002664 6.3e-09 63.5 50 54.0
CsaV3_3G047670 Cucumis sativus L. HOM05D002529 ORTHO05D002664 6.3e-09 63.5 57 50.9
Os08g0508600 Oryza sativa ssp. japonica HOM05D002529 ORTHO05D002664 6.3e-09 63.5 53 50.9
SEGI_20714 Sequoiadendron giganteum HOM05D002529 ORTHO05D002664 6.3e-09 63.5 51 51.0
Glyma.19G009300 Glycine max HOM05D002529 ORTHO05D002664 8.2e-09 63.2 50 54.0
MD11G1033000 Malus domestica HOM05D002529 ORTHO05D002664 8.2e-09 63.2 49 61.2
CiPaw.07G007900 Carya illinoinensis HOM05D002529 ORTHO05D002664 1.1e-08 62.8 46 56.5
Eucgr.H04397 Eucalyptus grandis HOM05D002529 ORTHO05D002664 1.1e-08 62.8 53 47.2
Potri.013G035000 Populus trichocarpa HOM05D002529 ORTHO05D002664 1.1e-08 62.8 46 56.5
CANSAT54G0996 Cannabis sativa HOM05D002529 ORTHO05D002664 1.4e-08 62.4 51 51.0
PSO210G6081 Papaver somniferum HOM05D002529 ORTHO05D002664 1.4e-08 62.4 44 56.8
QL08p059718 Quercus lobata HOM05D002529 ORTHO05D002664 1.4e-08 62.4 47 53.2
SEGI_32869 Sequoiadendron giganteum HOM05D002529 ORTHO05D002664 1.4e-08 62.4 51 54.9
VMungo0251G2818 Vigna mungo HOM05D002529 ORTHO05D002664 1.4e-08 62.4 47 57.4
PSO210G7021 Papaver somniferum HOM05D002529 ORTHO05D002664 1.8e-08 62.0 48 58.3
Phvul.003G288900 Phaseolus vulgaris HOM05D002529 ORTHO05D002664 1.8e-08 62.0 51 52.9
Psat2g156040 Pisum sativum HOM05D002529 ORTHO05D002664 1.8e-08 62.0 47 55.3
TPR.G20395 Trifolium pratense HOM05D002529 ORTHO05D002664 1.8e-08 62.0 51 49.0
Atru.chr2.663 Acer truncatum HOM05D002529 ORTHO05D002664 3.1e-08 61.2 57 49.1
ATR0697G145 Amborella trichopoda HOM05D002529 ORTHO05D002664 3.1e-08 61.2 52 48.1
Dinv02599 Davidia involucrata HOM05D002529 ORTHO05D002664 3.1e-08 61.2 49 55.1
Nn6g34079 Nelumbo nucifera HOM05D002529 ORTHO05D002664 3.1e-08 61.2 44 56.8
PSO832G3905 Papaver somniferum HOM05D002529 ORTHO05D002664 3.1e-08 61.2 44 54.5
Potri.010G086800 Populus trichocarpa HOM05D002529 ORTHO05D002664 3.1e-08 61.2 60 43.3
Sabra05G0043300 Salix brachista HOM05D002529 ORTHO05D002664 3.1e-08 61.2 46 60.9
TWI12G0397 Tripterygium wilfordii HOM05D002529 ORTHO05D002664 3.1e-08 61.2 54 51.9
TWI12G0415 Tripterygium wilfordii HOM05D000460 ORTHO05D000333 3.1e-08 61.2 54 51.9
vmacro19828 Vaccinium macrocarpon HOM05D002529 ORTHO05D002664 3.1e-08 61.2 54 50.0
Glyma.13G169100 Glycine max HOM05D002529 ORTHO05D002664 4.1e-08 60.8 50 52.0
Sabra10G0056700 Salix brachista HOM05D002529 ORTHO05D002664 4.1e-08 60.8 57 45.6
Glyma.18G147100 Glycine max HOM05D002529 ORTHO05D002664 5.3e-08 60.5 47 55.3
Manes.08G120700 Manihot esculenta HOM05D002529 ORTHO05D002664 5.3e-08 60.5 47 55.3
Oeu044187.2 Olea europaea HOM05D002529 ORTHO05D002664 5.3e-08 60.5 49 51.0
Potri.005G047901 Populus trichocarpa HOM05D002529 ORTHO05D002664 5.3e-08 60.5 46 56.5
VMungo1383G2706 Vigna mungo HOM05D002529 ORTHO05D002664 5.3e-08 60.5 44 59.1
Rhsim02G0021700 Rhododendron simsii HOM05D002529 ORTHO05D002664 6.9e-08 60.1 50 50.0
PSO761G0286 Papaver somniferum HOM05D002529 ORTHO05D002664 9.1e-08 59.7 48 56.2
Ca_23953_v3 Cicer arietinum L. HOM05D002529 ORTHO05D002664 1.2e-07 59.3 47 53.2
Ca_23959_v3 Cicer arietinum L. HOM05D002529 ORTHO05D002664 1.2e-07 59.3 47 53.2
Nn1g02343 Nelumbo nucifera HOM05D002529 ORTHO05D002664 1.2e-07 59.3 50 52.0
vmacro15348 Vaccinium macrocarpon HOM05D002529 ORTHO05D002664 1.2e-07 59.3 44 50.0
Ciclev10002511m.g Citrus clementina HOM05D002529 ORTHO05D002664 1.5e-07 58.9 47 55.3
Nn5g28120 Nelumbo nucifera HOM05D002529 ORTHO05D002664 1.5e-07 58.9 50 52.0
Peaxi162Scf00071g00848 Petunia axillaris HOM05D002529 ORTHO05D002664 1.5e-07 58.9 45 57.8
Solyc01g096760.3 Solanum lycopersicum HOM05D002529 ORTHO05D002664 1.5e-07 58.9 54 51.9
Sopen01g040470 Solanum pennellii HOM05D002529 ORTHO05D002664 1.5e-07 58.9 54 51.9
Aqoxy2G03402 Aquilegia oxysepala HOM05D002529 ORTHO05D002664 2.6e-07 58.2 52 46.2
PGR042G1603 Punica granatum HOM05D002529 ORTHO05D002664 3.4e-07 57.8 52 48.1
PGR044G2150 Punica granatum HOM05D002529 ORTHO05D002664 3.4e-07 57.8 52 48.1
Sabra13G0034100 Salix brachista HOM05D004408 ORTHO05D005486 3.4e-07 57.8 46 52.2
Hund12122 Selenicereus undatus HOM05D002529 ORTHO05D002664 3.4e-07 57.8 48 50.0
arahy.Tifrunner.gnm1.ann1.2EE7P6 Arachis hypogaea HOM05D002529 ORTHO05D002664 4.5e-07 57.4 48 50.0
arahy.Tifrunner.gnm1.ann1.418MG4 Arachis hypogaea HOM05D002529 ORTHO05D002664 4.5e-07 57.4 48 50.0
arahy.Tifrunner.gnm1.ann1.G3F6T9 Arachis hypogaea HOM05D002529 ORTHO05D002664 4.5e-07 57.4 48 50.0
Manes.15G029600 Manihot esculenta HOM05D002529 ORTHO05D002664 4.5e-07 57.4 54 48.1
SMO351G0221 Selaginella moellendorffii HOM05D002529 ORTHO05D002664 4.5e-07 57.4 48 52.1
PGSC0003DMG400027508 Solanum tuberosum HOM05D002529 ORTHO05D002664 4.5e-07 57.4 54 51.9
arahy.Tifrunner.gnm1.ann1.C65CX3 Arachis hypogaea HOM05D002529 ORTHO05D002664 5.9e-07 57.0 48 50.0
Cpa.g.sc114.63 Carica papaya HOM05D002529 ORTHO05D002664 7.7e-07 56.6 50 48.0
Actinidia36955 Actinidia chinensis HOM05D002529 ORTHO05D002664 1.0e-06 56.2 45 55.6
Pp3c3_31460 Physcomitrium patens HOM05D002529 ORTHO05D002664 1.0e-06 56.2 59 45.8
MSTRG.5850 Avicennia marina HOM05D002529 ORTHO05D002664 1.3e-06 55.8 50 50.0
CDE02G1669 Ceratophyllum demersum HOM05D001659 ORTHO05D001659 1.3e-06 55.8 48 50.0
DCAR_018312 Daucus carota HOM05D002529 ORTHO05D002664 1.3e-06 55.8 54 42.6
COL.COLO4_15255 Corchorus olitorius HOM05D002529 ORTHO05D002664 1.7e-06 55.5 50 48.0
Thecc.04G233300 Theobroma cacao HOM05D002529 ORTHO05D002664 1.7e-06 55.5 50 46.0
unitig_578.g16363 Utricularia gibba HOM05D000550 ORTHO05D000400 1.7e-06 55.5 54 48.1
arahy.Tifrunner.gnm1.ann1.2T97DK Arachis hypogaea HOM05D002529 ORTHO05D002664 2.2e-06 55.1 48 47.9
arahy.Tifrunner.gnm1.ann1.A0H8UL Arachis hypogaea HOM05D002529 ORTHO05D002664 2.2e-06 55.1 48 47.9
arahy.Tifrunner.gnm1.ann1.DGU1VQ Arachis hypogaea HOM05D002529 ORTHO05D002664 2.2e-06 55.1 48 47.9
arahy.Tifrunner.gnm1.ann1.EKEG73 Arachis hypogaea HOM05D002529 ORTHO05D002664 2.2e-06 55.1 48 47.9
Cc06_g23700 Coffea canephora HOM05D002529 ORTHO05D002664 2.2e-06 55.1 45 51.1
HanXRQChr07g0200741 Helianthus annuus HOM05D002529 ORTHO05D002664 2.2e-06 55.1 42 52.4
Lsat_1_v5_gn_2_115920 Lactuca sativa HOM05D002529 ORTHO05D002664 2.2e-06 55.1 42 50.0
Zm00001eb218130 Zea mays HOM05D002529 ORTHO05D002664 2.2e-06 55.1 50 46.0
ATR0730G133 Amborella trichopoda HOM05D002529 ORTHO05D002664 2.9e-06 54.7 62 43.5
arahy.Tifrunner.gnm1.ann1.X9ULGB Arachis hypogaea HOM05D002529 ORTHO05D002664 2.9e-06 54.7 50 46.0
CSS0050505 Camellia sinensis var. sinensis HOM05D002529 ORTHO05D002664 2.9e-06 54.7 54 42.6
Dinv14000 Davidia involucrata HOM05D002529 ORTHO05D002664 2.9e-06 54.7 50 46.0
Duzib128G1976 Durio zibethinus HOM05D002529 ORTHO05D002664 2.9e-06 54.7 47 48.9
Duzib177G0239 Durio zibethinus HOM05D000460 ORTHO05D000333 2.9e-06 54.7 43 53.5
Lsat_1_v5_gn_1_56180 Lactuca sativa HOM05D002529 ORTHO05D002664 2.9e-06 54.7 42 47.6
Medtr8g043450 Medicago truncatula HOM05D002529 ORTHO05D002664 2.9e-06 54.7 46 50.0
SGA_v2.0_scaffold522G52708 Striga asiatica HOM05D002529 ORTHO05D002664 2.9e-06 54.7 50 46.0
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 3.8e-06 54.3 39 59.0
Aqoxy1G03767 Aquilegia oxysepala HOM05D002529 ORTHO05D002664 5.0e-06 53.9 48 47.9
Aqoxy3G00616 Aquilegia oxysepala HOM05D002529 ORTHO05D002664 5.0e-06 53.9 48 47.9
SalBow3G3572 Salvia bowleyana HOM05D002529 ORTHO05D002664 5.0e-06 53.9 54 42.6
Atru.chr4.2452 Acer truncatum HOM05D002529 ORTHO05D002664 6.5e-06 53.5 48 43.8
Cc03_g03880 Coffea canephora HOM05D002529 ORTHO05D002664 6.5e-06 53.5 42 45.2
COL.COLO4_21488 Corchorus olitorius HOM05D002529 ORTHO05D002664 6.5e-06 53.5 46 45.7
ECA238G0509 Erigeron canadensis HOM05D002529 ORTHO05D002664 6.5e-06 53.5 42 47.6
Prupe.1G015200 Prunus persica HOM05D002529 ORTHO05D002664 6.5e-06 53.5 45 44.4
GSVIVG01021882001 Vitis vinifera HOM05D002529 ORTHO05D002664 6.5e-06 53.5 45 44.4
CSS0043802 Camellia sinensis var. sinensis HOM05D002529 ORTHO05D002664 8.5e-06 53.1 54 42.6
Cpa.g.sc13.273 Carica papaya HOM05D002866 ORTHO05D008706 8.5e-06 53.1 49 42.9
Duzib212G0919 Durio zibethinus HOM05D002529 ORTHO05D002664 8.5e-06 53.1 46 50.0
Thecc.05G290400 Theobroma cacao HOM05D002529 ORTHO05D002664 8.5e-06 53.1 47 48.9


User provided reference genes

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