Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0025151 Rosa chinensis HOM05D008485 ORTHO05D009647 6.8e-173 610.5 299 100.0
RcHm_v2.0_Chr7g0208561 Rosa chinensis HOM05D008485 ORTHO05D009647 1.9e-106 389.8 205 93.7
FAN11G3939 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.5e-71 273.9 283 47.0
FAN23G3051 Fragaria x ananassa HOM05D008485 ORTHO05D009647 9.7e-71 271.2 281 46.6
RcHm_v2.0_Chr4g0434301 Rosa chinensis HOM05D008485 ORTHO05D009647 6.3e-70 268.5 121 99.2
FAN13G3330 Fragaria x ananassa HOM05D008485 ORTHO05D009647 8.2e-70 268.1 281 45.9
FAN23G0398 Fragaria x ananassa HOM05D008485 ORTHO05D009647 8.2e-70 268.1 281 45.9
RcHm_v2.0_Chr4g0403221 Rosa chinensis HOM05D008485 ORTHO05D009647 1.4e-69 267.3 121 98.3
RcHm_v2.0_Chr6g0264941 Rosa chinensis HOM05D008485 ORTHO05D009647 9.4e-66 254.6 206 53.4
RcHm_v2.0_Chr1g0329081 Rosa chinensis HOM05D008485 ORTHO05D009647 6.1e-65 251.9 205 53.2
RcHm_v2.0_Chr5g0029021 Rosa chinensis HOM05D008485 ORTHO05D009647 1.3e-51 207.6 220 44.1
RcHm_v2.0_Chr5g0070861 Rosa chinensis HOM05D008485 ORTHO05D009647 4.2e-50 202.6 240 42.1
FAN10G1422 Fragaria x ananassa HOM05D008485 ORTHO05D009647 5.5e-50 202.2 158 55.7
RcHm_v2.0_Chr5g0036581 Rosa chinensis HOM05D008485 ORTHO05D009647 1.2e-49 201.1 222 42.8
FAN13G0756 Fragaria x ananassa HOM05D008485 ORTHO05D009647 2.8e-49 199.9 170 52.4
RcHm_v2.0_Chr1g0381361 Rosa chinensis HOM05D016653 ORTHO05D009647 3.7e-38 162.9 232 32.3
RcHm_v2.0_Chr5g0076701 Rosa chinensis HOM05D008485 ORTHO05D009647 8.3e-38 161.8 104 75.0
RcHm_v2.0_Chr6g0272081 Rosa chinensis HOM05D008485 ORTHO05D009647 2.0e-36 157.1 104 73.1
RcHm_v2.0_Chr5g0041581 Rosa chinensis HOM05D008485 ORTHO05D009647 2.3e-35 153.7 219 38.4
FAN17G2617 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.9e-34 150.6 114 56.1
FvH4_1g18340 Fragaria vesca HOM05D008485 ORTHO05D009647 2.5e-34 150.2 123 53.7
FvH4_3g05430 Fragaria vesca HOM05D008485 ORTHO05D009647 2.5e-34 150.2 123 53.7
RcHm_v2.0_Chr3g0477491 Rosa chinensis HOM05D009879 ORTHO05D009647 4.4e-31 139.4 210 33.8
RcHm_v2.0_Chr5g0007651 Rosa chinensis HOM05D009879 ORTHO05D009647 4.9e-30 136.0 183 34.4
RcHm_v2.0_Chr5g0040531 Rosa chinensis HOM05D009879 ORTHO05D009647 8.3e-30 135.2 197 33.5
RcHm_v2.0_Chr2g0094421 Rosa chinensis HOM05D008485 ORTHO05D009647 1.4e-29 134.4 132 43.9
FAN07G2263 Fragaria x ananassa HOM05D011706 ORTHO05D009647 3.3e-26 123.2 231 29.9
RcHm_v2.0_Chr1g0341051 Rosa chinensis HOM05D008485 ORTHO05D009647 1.6e-25 120.9 160 41.2
RcHm_v2.0_Chr1g0346821 Rosa chinensis HOM05D009879 ORTHO05D009647 4.0e-24 116.3 262 28.6
RcHm_v2.0_Chr1g0332631 Rosa chinensis HOM05D009879 ORTHO05D009647 1.5e-23 114.4 155 33.5
FvH4_1g01701 Fragaria vesca HOM05D002291 ORTHO05D000222 2.0e-23 114.0 222 27.9
FAN19G1637 Fragaria x ananassa HOM05D002291 ORTHO05D000222 2.0e-23 114.0 222 27.9
FAN28G2311 Fragaria x ananassa HOM05D002291 ORTHO05D000222 2.0e-23 114.0 222 27.9
FAN23G1656 Fragaria x ananassa HOM05D002291 ORTHO05D000222 2.6e-23 113.6 229 27.9
FAN17G2464 Fragaria x ananassa HOM05D009879 ORTHO05D009647 7.5e-23 112.1 150 34.7
RcHm_v2.0_Chr2g0086631 Rosa chinensis HOM05D002291 ORTHO05D000222 7.5e-23 112.1 222 27.0
FAN03G0178 Fragaria x ananassa HOM05D009879 ORTHO05D009647 1.3e-22 111.3 232 27.6
FAN06G0059 Fragaria x ananassa HOM05D009879 ORTHO05D009647 1.3e-22 111.3 275 26.5
FvH4_6g23072 Fragaria vesca HOM05D009879 ORTHO05D009647 8.3e-22 108.6 146 32.2
FvH4_7g09790 Fragaria vesca HOM05D009879 ORTHO05D009647 8.3e-22 108.6 230 27.8
FAN18G0028 Fragaria x ananassa HOM05D009879 ORTHO05D009647 1.4e-21 107.8 144 31.9
RcHm_v2.0_Chr1g0346841 Rosa chinensis HOM05D009879 ORTHO05D009647 3.2e-21 106.7 240 28.3
FAN06G1112 Fragaria x ananassa HOM05D009879 ORTHO05D009647 4.1e-21 106.3 230 27.4
FAN10G2059 Fragaria x ananassa HOM05D008485 ORTHO05D009647 4.1e-21 106.3 74 55.4
FAN01G2912 Fragaria x ananassa HOM05D009879 ORTHO05D009647 9.2e-21 105.1 169 33.1
FAN16G1636 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.7e-19 100.9 145 38.6
RcHm_v2.0_Chr7g0206051 Rosa chinensis HOM05D008485 ORTHO05D009647 3.9e-19 99.8 99 46.5
Dinv31455 Davidia involucrata HOM05D000791 ORTHO05D000669 6.6e-19 99.0 262 26.3
FAN21G0826 Fragaria x ananassa HOM05D009879 ORTHO05D009647 2.5e-18 97.1 123 36.6
FAN26G1277 Fragaria x ananassa HOM05D002291 ORTHO05D000222 2.5e-18 97.1 175 29.1
TWI23G0759 Tripterygium wilfordii HOM05D008985 ORTHO05D000222 1.6e-17 94.4 224 25.4
TWI38G1494 Tripterygium wilfordii HOM05D008985 ORTHO05D000222 2.1e-17 94.0 224 25.4
MELO3C031804.2 Cucumis melo HOM05D001963 ORTHO05D001863 3.6e-17 93.2 225 25.8
RcHm_v2.0_Chr7g0208571 Rosa chinensis HOM05D008485 ORTHO05D009647 8.1e-17 92.0 43 95.3
Prupe.5G199500 Prunus persica HOM05D008985 ORTHO05D000222 1.1e-16 91.7 276 22.5
FAN15G2881 Fragaria x ananassa HOM05D009879 ORTHO05D009647 3.1e-16 90.1 133 33.1
CANSAT01G1847 Cannabis sativa HOM05D014621 ORTHO05D015019 6.8e-16 89.0 271 24.7
Dinv24767 Davidia involucrata HOM05D000791 ORTHO05D000669 8.9e-16 88.6 226 26.5
MD04G1142700 Malus domestica HOM05D000514 ORTHO05D000222 2.6e-15 87.0 185 25.4
Dinv01181 Davidia involucrata HOM05D000791 ORTHO05D000669 3.4e-15 86.7 220 27.7
Dinv16095 Davidia involucrata HOM05D000791 ORTHO05D000669 5.8e-15 85.9 209 27.8
CANSAT56G2277 Cannabis sativa HOM05D014621 ORTHO05D015019 2.2e-14 84.0 272 23.9
MD15G1306500 Malus domestica HOM05D000514 ORTHO05D000222 8.4e-14 82.0 156 26.9
FAN16G1989 Fragaria x ananassa HOM05D008485 ORTHO05D009647 9.2e-13 78.6 63 57.1
MD09G1277700 Malus domestica HOM05D008485 ORTHO05D009647 1.3e-11 74.7 77 45.5
FvH4_7g02471 Fragaria vesca HOM05D009879 ORTHO05D009647 1.1e-10 71.6 85 40.0
Dinv02106 Davidia involucrata HOM05D000791 ORTHO05D000669 1.9e-10 70.9 143 27.3
RcHm_v2.0_Chr5g0004171 Rosa chinensis HOM05D008485 ORTHO05D009647 3.3e-10 70.1 54 72.2
Dinv18594 Davidia involucrata HOM05D000791 ORTHO05D000669 9.6e-10 68.6 197 27.4
FAN21G1637 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.3e-09 68.2 50 64.0
FvH4_7g02601 Fragaria vesca HOM05D009879 ORTHO05D009647 2.1e-09 67.4 78 41.0
MELO3C028799.2 Cucumis melo HOM05D001963 ORTHO05D001863 2.8e-09 67.0 199 23.6
MBI11_g23002_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.8e-09 66.2 239 24.3
HanXRQChr16g0521191 Helianthus annuus HOM05D009677 ORTHO05D003386 1.4e-08 64.7 240 22.1
MBI14_g22673_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.4e-08 63.9 163 23.9
MBI16_g34285_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.3e-08 62.8 116 25.9
RcHm_v2.0_Chr3g0469161 Rosa chinensis HOM05D009879 ORTHO05D009647 5.3e-08 62.8 64 39.1
Dinv09859 Davidia involucrata HOM05D000791 ORTHO05D000669 6.9e-08 62.4 139 23.7
MBI09_g10054_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.2e-07 61.6 119 24.4
Lj1A283G17 Lonicera japonica HOM05D008705 ORTHO05D000669 1.5e-07 61.2 177 25.4
RcHm_v2.0_Chr7g0206041 Rosa chinensis HOM05D008485 ORTHO05D009647 2.0e-07 60.8 52 44.2
FvH4_3g43970 Fragaria vesca HOM05D008485 ORTHO05D009647 4.4e-07 59.7 45 57.8
MBI18_g07911_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.4e-07 59.7 212 21.7
MBI12_g16196_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.8e-07 59.3 152 24.3
CANSAT01G2686 Cannabis sativa HOM05D009677 ORTHO05D011883 1.7e-06 57.8 182 21.4
Dinv13764 Davidia involucrata HOM05D011313 ORTHO05D013316 1.7e-06 57.8 275 22.9
MBI14_g44240_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.7e-06 57.8 126 22.2
Oeu006554.1 Olea europaea HOM05D017951 ORTHO05D020916 8.4e-06 55.5 195 24.6


User provided reference genes

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