Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0024631 Rosa chinensis HOM05D002652 ORTHO05D002739 1.5e-93 346.3 189 100.0
FAN16G2437 Fragaria x ananassa HOM05D002652 ORTHO05D002739 2.9e-73 278.9 167 91.6
FAN11G1518 Fragaria x ananassa HOM05D002652 ORTHO05D002739 6.6e-73 277.7 167 91.0
FAN21G1568 Fragaria x ananassa HOM05D002652 ORTHO05D002739 6.6e-73 277.7 162 93.2
FvH4_3g15000 Fragaria vesca HOM05D002652 ORTHO05D002739 2.5e-72 275.8 162 91.4
FAN25G0269 Fragaria x ananassa HOM05D002652 ORTHO05D002739 3.8e-44 182.2 115 87.0
Prupe.4G134500 Prunus persica HOM05D002652 ORTHO05D002739 4.0e-38 162.2 170 62.4
QL09p048410 Quercus lobata HOM05D002652 ORTHO05D002739 3.0e-33 146.0 155 58.1
QL08p018841 Quercus lobata HOM05D002652 ORTHO05D002739 1.9e-32 143.3 155 45.8
QL06p021327 Quercus lobata HOM05D002652 ORTHO05D002739 4.3e-32 142.1 155 45.8
QL09p048820 Quercus lobata HOM05D002652 ORTHO05D002739 3.6e-31 139.0 155 58.7
Haze_11472 Corylus avellana HOM05D002652 ORTHO05D002739 4.8e-31 138.7 155 58.7
FvH4_4g04990 Fragaria vesca HOM05D002652 ORTHO05D002739 6.2e-31 138.3 162 44.4
FAN12G0867 Fragaria x ananassa HOM05D004511 ORTHO05D005348 3.1e-30 136.0 161 51.6
RcHm_v2.0_Chr4g0395801 Rosa chinensis HOM05D002652 ORTHO05D002739 4.0e-30 135.6 161 54.7
Cfa014794 Carpinus fangiana HOM05D002652 ORTHO05D002739 9.0e-30 134.4 156 44.9
QL09p048770 Quercus lobata HOM05D002652 ORTHO05D002739 9.0e-30 134.4 155 57.4
FvH4_4g04980 Fragaria vesca HOM05D002652 ORTHO05D002739 2.0e-29 133.3 161 47.2
FAN25G0267 Fragaria x ananassa HOM05D002652 ORTHO05D002739 1.3e-28 130.6 154 55.8
CiPaw.01G177100 Carya illinoinensis HOM05D002652 ORTHO05D002739 2.2e-28 129.8 156 55.1
FAN22G0933 Fragaria x ananassa HOM05D004511 ORTHO05D005348 2.2e-28 129.8 161 54.7
Atru.chr4.1903 Acer truncatum HOM05D002652 ORTHO05D002739 8.4e-28 127.9 155 54.2
RcHm_v2.0_Chr5g0024661 Rosa chinensis HOM05D002652 ORTHO05D002739 4.2e-27 125.6 154 47.4
Cpa.g.sc59.9 Carica papaya HOM05D002652 ORTHO05D002739 5.4e-27 125.2 158 43.0
RcHm_v2.0_Chr4g0395741 Rosa chinensis HOM05D002652 ORTHO05D002739 7.1e-27 124.8 130 57.7
MD05G1228500 Malus domestica HOM05D002652 ORTHO05D002739 2.7e-26 122.9 126 50.8
QL06p021274 Quercus lobata HOM05D002652 ORTHO05D002739 6.0e-26 121.7 155 42.6
CiPaw.02G106000 Carya illinoinensis HOM05D002652 ORTHO05D002739 7.9e-26 121.3 155 41.9
AL9U10120 Arabidopsis lyrata HOM05D002652 ORTHO05D002739 1.3e-25 120.6 155 49.0
AT4G13440 Arabidopsis thaliana HOM05D002652 ORTHO05D002739 1.3e-25 120.6 155 49.7
Prupe.1G050000 Prunus persica HOM05D002652 ORTHO05D002739 1.3e-25 120.6 166 42.2
Carub.0007s2911 Capsella rubella HOM05D002652 ORTHO05D002739 1.8e-25 120.2 155 41.9
Cpa.g.sc8968.1 Carica papaya HOM05D002652 ORTHO05D002739 1.8e-25 120.2 155 42.6
CARHR219080 Cardamine hirsuta HOM05D002652 ORTHO05D002739 3.0e-25 119.4 155 43.9
THA.LOC104821630 Tarenaya hassleriana HOM05D002652 ORTHO05D002739 9.6e-24 114.4 157 40.8
Prupe.1G050100 Prunus persica HOM05D002652 ORTHO05D002739 1.3e-23 114.0 157 43.9
Aa31LG7G1800 Aethionema arabicum HOM05D002652 ORTHO05D002739 4.8e-23 112.1 155 38.7
Aa31LG7G1660 Aethionema arabicum HOM05D002652 ORTHO05D002739 6.9e-22 108.2 155 41.3
Aa31LG9G4240 Aethionema arabicum HOM05D002652 ORTHO05D002739 6.9e-22 108.2 155 38.1
RcHm_v2.0_Chr4g0395751 Rosa chinensis HOM05D002652 ORTHO05D002739 9.0e-22 107.8 159 39.0
Migut.G00567 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.5e-21 107.1 160 46.9
A09p20860 Brassica napus HOM05D002652 ORTHO05D002739 2.6e-21 106.3 156 40.4
BraA09t37688Z Brassica rapa HOM05D002652 ORTHO05D002739 2.6e-21 106.3 156 40.4
BcaB07g30971 Brassica carinata HOM05D002652 ORTHO05D002739 5.8e-21 105.1 156 39.7
QL09p048859 Quercus lobata HOM05D002652 ORTHO05D002739 7.6e-21 104.8 166 52.4
QL09p048788 Quercus lobata HOM05D002652 ORTHO05D002739 1.7e-20 103.6 126 43.7
BcaC04g21865 Brassica carinata HOM05D002652 ORTHO05D002739 2.9e-20 102.8 156 39.7
BolC9t55542H Brassica oleracea HOM05D002652 ORTHO05D002739 2.9e-20 102.8 156 39.7
Haze_25448 Corylus avellana HOM05D002652 ORTHO05D002739 2.9e-20 102.8 150 42.7
Haze_11422 Corylus avellana HOM05D001324 ORTHO05D001220 2.5e-19 99.8 152 42.1
TAR636G1048 Trochodendron aralioides HOM05D002652 ORTHO05D002739 3.2e-19 99.4 156 46.8
TAR636G3443 Trochodendron aralioides HOM05D002652 ORTHO05D002739 3.2e-19 99.4 156 46.8
C09p26400 Brassica napus HOM05D002652 ORTHO05D002739 5.5e-19 98.6 156 39.1
Aa31LG7G1670 Aethionema arabicum HOM05D002652 ORTHO05D002739 9.3e-19 97.8 123 43.1
Cfa021216 Carpinus fangiana HOM05D002652 ORTHO05D002739 1.2e-18 97.4 126 42.1
TAR365G0384 Trochodendron aralioides HOM05D002652 ORTHO05D002739 1.2e-18 97.4 160 35.0
SalBow2G1631 Salvia bowleyana HOM05D002652 ORTHO05D002739 1.6e-18 97.1 158 45.6
TAR636G2313 Trochodendron aralioides HOM05D002652 ORTHO05D002739 1.6e-18 97.1 157 38.9
Aa31LG7G1790 Aethionema arabicum HOM05D002652 ORTHO05D002739 2.1e-18 96.7 155 36.1
GSVIVG01027929001 Vitis vinifera HOM05D002652 ORTHO05D002739 2.7e-18 96.3 163 36.2
Oeu020135.1 Olea europaea HOM05D002652 ORTHO05D002739 6.0e-18 95.1 158 36.1
Aa31LG9G4330 Aethionema arabicum HOM05D002652 ORTHO05D002739 1.8e-17 93.6 135 38.5
FvH4_3g15020 Fragaria vesca HOM05D002652 ORTHO05D002739 3.0e-17 92.8 154 42.9
Nn1g00660 Nelumbo nucifera HOM05D002652 ORTHO05D002739 3.0e-17 92.8 161 34.2
Aqoxy7G00431 Aquilegia oxysepala HOM05D002652 ORTHO05D002739 1.1e-16 90.9 152 34.9
Manes.15G046400 Manihot esculenta HOM05D002652 ORTHO05D002739 1.5e-16 90.5 157 43.9
Oeu059391.1 Olea europaea HOM05D002652 ORTHO05D002739 3.3e-16 89.4 155 32.3
Nn1g00655 Nelumbo nucifera HOM05D002652 ORTHO05D002739 4.3e-16 89.0 157 33.8
Nn1g00658 Nelumbo nucifera HOM05D002652 ORTHO05D002739 4.3e-16 89.0 157 33.8
TAR174G0001 Trochodendron aralioides HOM05D002652 ORTHO05D002739 4.3e-16 89.0 167 31.1
Dinv29797 Davidia involucrata HOM05D002652 ORTHO05D002739 7.4e-16 88.2 154 34.4
Aa31LG9G4210 Aethionema arabicum HOM05D002652 ORTHO05D002739 9.6e-16 87.8 156 37.2
Nn2g14922 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.6e-15 87.0 153 41.2
COL.COLO4_15898 Corchorus olitorius HOM05D002652 ORTHO05D002739 2.8e-15 86.3 157 33.8
Manes.03G158000 Manihot esculenta HOM05D002652 ORTHO05D002739 3.7e-15 85.9 157 43.3
Aa31LG9G4200 Aethionema arabicum HOM05D002652 ORTHO05D002739 2.4e-14 83.2 176 34.7
MSTRG.4179 Avicennia marina HOM05D002652 ORTHO05D002739 2.4e-14 83.2 156 33.3
Potri.010G191400 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.4e-14 83.2 155 32.9
TAR636G2060 Trochodendron aralioides HOM05D002652 ORTHO05D002739 2.4e-14 83.2 156 45.5
Rhsim02G0045100 Rhododendron simsii HOM05D002652 ORTHO05D002739 3.1e-14 82.8 155 31.6
Rhsim02G0046000 Rhododendron simsii HOM05D002652 ORTHO05D002739 5.3e-14 82.0 155 31.6
Aa31LG7G1750 Aethionema arabicum HOM05D002652 ORTHO05D002739 1.2e-13 80.9 118 37.3
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 1.2e-13 80.9 161 34.2
SalBow2G2144 Salvia bowleyana HOM05D000062 ORTHO05D000043 1.2e-13 80.9 159 34.0
Migut.N00313 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.5e-13 80.5 158 39.2
Prupe.6G152600 Prunus persica HOM05D002652 ORTHO05D002739 2.0e-13 80.1 55 69.1
FvH4_4g04900 Fragaria vesca HOM05D002652 ORTHO05D002739 7.6e-13 78.2 154 42.2
FAN12G4037 Fragaria x ananassa HOM05D002652 ORTHO05D002739 7.6e-13 78.2 157 35.0
Nn1g00657 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.0e-12 77.8 178 30.3
GSVIVG01027930001 Vitis vinifera HOM05D002652 ORTHO05D002739 1.0e-12 77.8 152 31.6
Nn1g00661 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.7e-12 77.0 152 30.9
FvH4_4g04860 Fragaria vesca HOM05D002652 ORTHO05D002739 2.2e-12 76.6 157 42.0
RcHm_v2.0_Chr4g0397571 Rosa chinensis HOM05D002652 ORTHO05D002739 2.2e-12 76.6 161 37.3
Rhsim02G0046900 Rhododendron simsii HOM05D002652 ORTHO05D002739 3.8e-12 75.9 155 33.5
Nn5g27876 Nelumbo nucifera HOM05D002652 ORTHO05D002739 4.9e-12 75.5 160 33.8
Rhsim02G0047400 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.9e-12 75.5 155 31.6
RhsimUnG0058100 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.9e-12 75.5 153 33.3
RcHm_v2.0_Chr4g0395571 Rosa chinensis HOM05D002652 ORTHO05D002739 4.9e-12 75.5 157 33.8
Actinidia11376 Actinidia chinensis HOM05D002652 ORTHO05D002739 6.5e-12 75.1 157 42.7
RhsimUnG0058300 Rhododendron simsii HOM05D002652 ORTHO05D002739 6.5e-12 75.1 156 32.7
RhsimUnG0101000 Rhododendron simsii HOM05D002652 ORTHO05D002739 8.4e-12 74.7 155 31.6
ECA238G3361 Erigeron canadensis HOM05D000095 ORTHO05D002739 1.4e-11 73.9 156 37.2
RcHm_v2.0_Chr4g0395461 Rosa chinensis HOM05D002652 ORTHO05D002739 1.4e-11 73.9 152 38.8
SalBow3G3644 Salvia bowleyana HOM05D002652 ORTHO05D002739 1.4e-11 73.9 153 33.3
Rhsim02G0044800 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.9e-11 73.6 155 31.6
Sabra11G0121600 Salix brachista HOM05D002652 ORTHO05D002739 2.5e-11 73.2 157 29.9
Rhsim02G0046100 Rhododendron simsii HOM05D002652 ORTHO05D002739 3.2e-11 72.8 155 34.8
Nn1g08811 Nelumbo nucifera HOM05D002652 ORTHO05D002739 4.2e-11 72.4 157 31.8
RcHm_v2.0_Chr4g0395551 Rosa chinensis HOM05D002652 ORTHO05D002739 4.2e-11 72.4 161 39.1
Duzib147G0896 Durio zibethinus HOM05D002652 ORTHO05D002739 5.5e-11 72.0 155 30.3
FvH4_4g04850 Fragaria vesca HOM05D002652 ORTHO05D002739 5.5e-11 72.0 170 37.6
FAN12G2048 Fragaria x ananassa HOM05D002652 ORTHO05D002739 5.5e-11 72.0 170 37.6
FAN17G3082 Fragaria x ananassa HOM05D002652 ORTHO05D002739 5.5e-11 72.0 164 31.1
DCAR_002582 Daucus carota HOM05D002652 ORTHO05D002739 9.3e-11 71.2 160 33.1
Potri.019G026860 Populus trichocarpa HOM05D002652 ORTHO05D002739 9.3e-11 71.2 158 31.0
Actinidia39934 Actinidia chinensis HOM05D002652 ORTHO05D002739 1.2e-10 70.9 156 28.2
Hma1.2p1_0565F.1_g179480 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 1.2e-10 70.9 155 34.2
Hma1.2p1_0385F.1_g141620 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 1.6e-10 70.5 155 28.4
Nn1g06038 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.6e-10 70.5 139 31.7
Potri.019G026820 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.6e-10 70.5 164 28.7
ECA247G3161 Erigeron canadensis HOM05D002652 ORTHO05D002739 2.1e-10 70.1 155 28.4
FAN17G1721 Fragaria x ananassa HOM05D002652 ORTHO05D002739 2.1e-10 70.1 170 34.7
HanXRQChr07g0194071 Helianthus annuus HOM05D002652 ORTHO05D002739 2.1e-10 70.1 156 29.5
Potri.019G026740 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.1e-10 70.1 157 36.3
Thecc.04G266900 Theobroma cacao HOM05D002652 ORTHO05D002739 2.1e-10 70.1 161 31.1
Potri.019G026780 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.7e-10 69.7 158 30.4
Prupe.1G049700 Prunus persica HOM05D002652 ORTHO05D002739 2.7e-10 69.7 159 29.6
Oeu011205.1 Olea europaea HOM05D002652 ORTHO05D002739 3.5e-10 69.3 158 38.0
vmacro15483 Vaccinium macrocarpon HOM05D002652 ORTHO05D002739 3.5e-10 69.3 158 30.4
CiPaw.08G106800 Carya illinoinensis HOM05D002652 ORTHO05D002739 6.1e-10 68.6 165 29.7
Sabra19G0035200 Salix brachista HOM05D002652 ORTHO05D002739 6.1e-10 68.6 157 30.6
Sabra19G0035400 Salix brachista HOM05D002652 ORTHO05D002739 6.1e-10 68.6 157 30.6
CiPaw.08G106600 Carya illinoinensis HOM05D002652 ORTHO05D002739 7.9e-10 68.2 154 32.5
Potri.019G028800 Populus trichocarpa HOM05D002652 ORTHO05D002739 7.9e-10 68.2 157 31.2
Sabra19G0038900 Salix brachista HOM05D002652 ORTHO05D002739 7.9e-10 68.2 159 30.2
Potri.019G027000 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.0e-09 67.8 163 34.4
Potri.019G027200 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.0e-09 67.8 158 30.4
Oeu011207.1 Olea europaea HOM05D002652 ORTHO05D002739 1.3e-09 67.4 151 38.4
Potri.019G026900 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.3e-09 67.4 163 30.7
Potri.019G027100 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.3e-09 67.4 163 30.7
CiPaw.02G106100 Carya illinoinensis HOM05D002652 ORTHO05D002739 1.8e-09 67.0 126 34.9
Ciclev10005927m.g Citrus clementina HOM05D002652 ORTHO05D002739 2.3e-09 66.6 156 29.5
Lsat_1_v5_gn_2_105441 Lactuca sativa HOM05D002652 ORTHO05D002739 2.3e-09 66.6 157 37.6
Aa31LG9G4290 Aethionema arabicum HOM05D002652 ORTHO05D002739 3.9e-09 65.9 126 31.7
CSS0031417 Camellia sinensis var. sinensis HOM05D002652 ORTHO05D002739 3.9e-09 65.9 157 33.8
CSS0002481 Camellia sinensis var. sinensis HOM05D002652 ORTHO05D002739 6.7e-09 65.1 168 29.8
Potri.019G027440 Populus trichocarpa HOM05D002652 ORTHO05D002739 6.7e-09 65.1 158 30.4
CANSAT11G2136 Cannabis sativa HOM05D002652 ORTHO05D002739 8.7e-09 64.7 158 29.7
Rhsim02G0046300 Rhododendron simsii HOM05D002652 ORTHO05D002739 8.7e-09 64.7 147 34.7
Ciclev10006564m.g Citrus clementina HOM05D002652 ORTHO05D002739 1.1e-08 64.3 156 30.8
Oeu011211.1 Olea europaea HOM05D002652 ORTHO05D002739 1.1e-08 64.3 155 39.4
CiPaw.08G106400 Carya illinoinensis HOM05D002652 ORTHO05D002739 1.5e-08 63.9 154 31.8
Sabra19G0038500 Salix brachista HOM05D002652 ORTHO05D002739 1.5e-08 63.9 158 30.4
vmacro15484 Vaccinium macrocarpon HOM05D002652 ORTHO05D002739 1.5e-08 63.9 154 27.9
Actinidia11377 Actinidia chinensis HOM05D002652 ORTHO05D002739 1.9e-08 63.5 154 42.9
Duzib151G0943 Durio zibethinus HOM05D002652 ORTHO05D002739 1.9e-08 63.5 155 29.0
Sabra19G0038800 Salix brachista HOM05D002652 ORTHO05D002739 1.9e-08 63.5 160 30.0
Sabra19G0039000 Salix brachista HOM05D002652 ORTHO05D002739 1.9e-08 63.5 165 29.7
Duzib151G0030 Durio zibethinus HOM05D002652 ORTHO05D002739 2.5e-08 63.2 161 29.8
Potri.019G029100 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.5e-08 63.2 162 27.8
Potri.T121000 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.5e-08 63.2 155 25.2
COL.COLO4_15901 Corchorus olitorius HOM05D002652 ORTHO05D002739 3.3e-08 62.8 156 30.1
Rhsim02G0044600 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.3e-08 62.4 157 36.3
Sabra19G0038700 Salix brachista HOM05D002652 ORTHO05D002739 4.3e-08 62.4 158 29.7
COL.COLO4_15900 Corchorus olitorius HOM05D002652 ORTHO05D002739 5.7e-08 62.0 154 33.8
FAN12G2993 Fragaria x ananassa HOM05D002652 ORTHO05D002739 7.4e-08 61.6 165 27.3
CDE06G1987 Ceratophyllum demersum HOM05D038143 ORTHO05D002739 1.3e-07 60.8 159 30.2
Migut.O00454 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.3e-07 60.8 151 29.1
FvH4_4g04740 Fragaria vesca HOM05D002652 ORTHO05D002739 1.3e-07 60.8 160 28.1
Hma1.2p1_0042F.1_g025730 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 1.3e-07 60.8 155 29.0
RcHm_v2.0_Chr4g0395781 Rosa chinensis HOM05D002652 ORTHO05D002739 2.2e-07 60.1 90 40.0
Ciclev10007025m.g Citrus clementina HOM05D002652 ORTHO05D002739 4.8e-07 58.9 150 29.3
Potri.T121200 Populus trichocarpa HOM05D002652 ORTHO05D002739 4.8e-07 58.9 155 24.5
Potri.T121301 Populus trichocarpa HOM05D002652 ORTHO05D002739 4.8e-07 58.9 155 24.5
TAR636G0198 Trochodendron aralioides HOM05D002652 ORTHO05D002739 4.8e-07 58.9 156 28.2
FAN10G2095 Fragaria x ananassa HOM05D002652 ORTHO05D002739 6.3e-07 58.5 159 27.0
Sabra19G0035100 Salix brachista HOM05D002652 ORTHO05D002739 6.3e-07 58.5 163 27.0
Sabra19G0035500 Salix brachista HOM05D002652 ORTHO05D002739 6.3e-07 58.5 163 27.0
CANSAT78G1278 Cannabis sativa HOM05D002652 ORTHO05D002739 8.2e-07 58.2 159 28.3
FAN10G1323 Fragaria x ananassa HOM05D002652 ORTHO05D002739 8.2e-07 58.2 159 26.4
Migut.N00315 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.4e-06 57.4 111 29.7
Sabra19G0035300 Salix brachista HOM05D002652 ORTHO05D002739 1.4e-06 57.4 156 33.3
Rhsim02G0045000 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.8e-06 57.0 115 28.7
COL.COLO4_15907 Corchorus olitorius HOM05D002652 ORTHO05D002739 2.4e-06 56.6 156 27.6
Migut.N00305 Erythranthe guttata HOM05D002652 ORTHO05D002739 2.4e-06 56.6 149 28.9
Oeu061866.1 Olea europaea HOM05D002652 ORTHO05D002739 2.4e-06 56.6 52 48.1
Prupe.1G049600 Prunus persica HOM05D002652 ORTHO05D002739 3.1e-06 56.2 157 26.1


User provided reference genes

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