Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0023651 Rosa chinensis HOM05D003212 ORTHO05D015659 6.3e-24 113.2 56 100.0
RcHm_v2.0_Chr4g0435201 Rosa chinensis HOM05D003212 ORTHO05D015659 1.8e-23 111.7 56 98.2
TWI38G0920 Tripterygium wilfordii HOM05D003212 ORTHO05D003959 4.1e-15 84.0 46 91.3
RcHm_v2.0_Chr1g0323241 Rosa chinensis HOM05D003212 ORTHO05D003959 1.6e-14 82.0 46 89.1
CANSAT80G2392 Cannabis sativa HOM05D003212 ORTHO05D003959 2.0e-14 81.6 46 87.0
Prupe.2G032600 Prunus persica HOM05D003212 ORTHO05D003959 2.0e-14 81.6 46 89.1
MD09G1262400 Malus domestica HOM05D003212 ORTHO05D003959 2.7e-14 81.3 46 89.1
Nitab4.5_0000893g0050 Nicotiana tabacum HOM05D003212 ORTHO05D003959 2.7e-14 81.3 46 87.0
Nitab4.5_0001135g0170 Nicotiana tabacum HOM05D003212 ORTHO05D003959 2.7e-14 81.3 46 87.0
Oeu003925.2 Olea europaea HOM05D003212 ORTHO05D003959 2.7e-14 81.3 46 87.0
Actinidia21523 Actinidia chinensis HOM05D003212 ORTHO05D003959 3.5e-14 80.9 46 87.0
FAN01G2682 Fragaria x ananassa HOM05D003212 ORTHO05D003959 3.5e-14 80.9 46 89.1
FAN03G0414 Fragaria x ananassa HOM05D003212 ORTHO05D003959 3.5e-14 80.9 46 89.1
PGR031G0586 Punica granatum HOM05D003212 ORTHO05D003959 3.5e-14 80.9 46 87.0
PGSC0003DMG400019620 Solanum tuberosum HOM05D003212 ORTHO05D003959 3.5e-14 80.9 46 87.0
FvH4_7g02810 Fragaria vesca HOM05D003212 ORTHO05D003959 4.6e-14 80.5 46 89.1
FAN06G3951 Fragaria x ananassa HOM05D003212 ORTHO05D003959 4.6e-14 80.5 46 89.1
FAN10G3499 Fragaria x ananassa HOM05D003212 ORTHO05D003959 4.6e-14 80.5 46 89.1
Ca_18881_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 6.0e-14 80.1 46 87.0
Oeu002655.1 Olea europaea HOM05D003212 ORTHO05D003959 6.0e-14 80.1 46 84.8
Ca_23514_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 7.8e-14 79.7 46 84.8
Dinv32034 Davidia involucrata HOM05D003212 ORTHO05D003959 7.8e-14 79.7 46 84.8
Glyma.11G154200 Glycine max HOM05D003212 ORTHO05D003959 7.8e-14 79.7 46 84.8
Hma1.2p1_0384F.1_g141010 Hydrangea macrophylla HOM05D003212 ORTHO05D003959 7.8e-14 79.7 46 82.6
Phvul.005G029300 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 7.8e-14 79.7 46 84.8
Lj7A581T52 Lonicera japonica HOM05D003212 ORTHO05D003959 1.0e-13 79.3 46 87.0
Solyc11g068830.2 Solanum lycopersicum HOM05D003212 ORTHO05D003959 1.0e-13 79.3 46 84.8
CSS0010475 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 1.3e-13 79.0 46 78.3
CSS0011806 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 1.3e-13 79.0 46 78.3
Medtr1g025060 Medicago truncatula HOM05D003212 ORTHO05D003959 1.3e-13 79.0 46 84.8
Psat5g219440 Pisum sativum HOM05D003212 ORTHO05D003959 1.3e-13 79.0 46 84.8
Sed0013182 Sechium edule HOM05D003212 ORTHO05D003959 1.3e-13 79.0 46 87.0
Lalb_Chr14g0366121 Lupinus albus HOM05D003212 ORTHO05D003959 1.7e-13 78.6 46 82.6
Peaxi162Scf00010g03311 Petunia axillaris HOM05D003212 ORTHO05D003959 1.7e-13 78.6 46 84.8
Peaxi162Scf01010g00217 Petunia axillaris HOM05D003212 ORTHO05D003959 1.7e-13 78.6 46 84.8
MSTRG.20521 Avicennia marina HOM05D003212 ORTHO05D003959 2.3e-13 78.2 46 87.0
Migut.B01220 Erythranthe guttata HOM05D003212 ORTHO05D003959 2.3e-13 78.2 46 84.8
MSTRG.16992 Avicennia marina HOM05D003212 ORTHO05D003959 3.0e-13 77.8 46 82.6
Cc02_g26670 Coffea canephora HOM05D003212 ORTHO05D003959 3.0e-13 77.8 46 82.6
SalBow5G0323 Salvia bowleyana HOM05D003212 ORTHO05D003959 3.0e-13 77.8 46 84.8
SalBow5G1158 Salvia bowleyana HOM05D003212 ORTHO05D003959 3.0e-13 77.8 46 84.8
SalBow5G4173 Salvia bowleyana HOM05D003212 ORTHO05D003959 3.0e-13 77.8 46 84.8
SalBow5G4847 Salvia bowleyana HOM05D003212 ORTHO05D003959 3.0e-13 77.8 46 84.8
vmacro12692 Vaccinium macrocarpon HOM05D003212 ORTHO05D003959 3.0e-13 77.8 46 84.8
FvH4_3g03840 Fragaria vesca HOM05D013275 ORTHO05D015659 3.9e-13 77.4 46 82.6
Lj3g0024329 Lotus japonicus HOM05D003212 ORTHO05D003959 3.9e-13 77.4 46 82.6
ClCG01G007740 Citrullus lanatus HOM05D003212 ORTHO05D003959 5.0e-13 77.0 46 80.4
Ciclev10001014m.g Citrus clementina HOM05D003212 ORTHO05D003959 5.0e-13 77.0 46 80.4
MELO3C005122.2 Cucumis melo HOM05D003212 ORTHO05D003959 5.0e-13 77.0 46 80.4
CsaV3_5G024820 Cucumis sativus L. HOM05D003212 ORTHO05D003959 5.0e-13 77.0 46 80.4
Sed0011268 Sechium edule HOM05D003212 ORTHO05D003959 5.0e-13 77.0 46 80.4
Oeu056551.1 Olea europaea HOM05D003212 ORTHO05D003959 6.6e-13 76.6 46 82.6
VMungo1080G0024 Vigna mungo HOM05D003212 ORTHO05D003959 6.6e-13 76.6 46 80.4
DCAR_006596 Daucus carota HOM05D003212 ORTHO05D003959 8.6e-13 76.3 46 82.6
Nn7g36634 Nelumbo nucifera HOM05D003212 ORTHO05D003959 8.6e-13 76.3 46 78.3
Sopen11g027550 Solanum pennellii HOM05D003212 ORTHO05D003959 8.6e-13 76.3 46 82.6
TAR369G1042 Trochodendron aralioides HOM05D003212 ORTHO05D003959 8.6e-13 76.3 46 78.3
Aqoxy2G00340 Aquilegia oxysepala HOM05D003212 ORTHO05D003959 1.1e-12 75.9 46 76.1
Aqoxy3G03071 Aquilegia oxysepala HOM05D003212 ORTHO05D003959 1.1e-12 75.9 46 76.1
Migut.N01834 Erythranthe guttata HOM05D003212 ORTHO05D003959 1.1e-12 75.9 46 82.6
Lsat_1_v5_gn_5_157360 Lactuca sativa HOM05D003212 ORTHO05D003959 1.1e-12 75.9 46 73.9
Medtr3g017580 Medicago truncatula HOM05D003212 ORTHO05D003959 1.1e-12 75.9 46 82.6
Phvul.011G207800 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 1.1e-12 75.9 46 80.4
TPR.G17794 Trifolium pratense HOM05D003212 ORTHO05D003959 1.1e-12 75.9 46 82.6
Glyma.13G198700 Glycine max HOM05D003212 ORTHO05D003959 1.5e-12 75.5 46 80.4
Lj3g0002083 Lotus japonicus HOM05D003212 ORTHO05D003959 1.5e-12 75.5 46 80.4
Rhsim01G0123800 Rhododendron simsii HOM05D003212 ORTHO05D003959 1.5e-12 75.5 46 80.4
THA.LOC104824191 Tarenaya hassleriana HOM05D003212 ORTHO05D003959 1.5e-12 75.5 46 80.4
unitig_26.g9606 Utricularia gibba HOM05D003212 ORTHO05D003959 1.5e-12 75.5 46 80.4
VMungo1127G0513 Vigna mungo HOM05D003212 ORTHO05D003959 1.5e-12 75.5 46 78.3
Aa31LG1G5360 Aethionema arabicum HOM05D003212 ORTHO05D003959 1.9e-12 75.1 46 80.4
ATR0789G118 Amborella trichopoda HOM05D003212 ORTHO05D003959 1.9e-12 75.1 46 80.4
Potri.001G026300 Populus trichocarpa HOM05D003212 ORTHO05D003959 1.9e-12 75.1 46 80.4
SGA_v2.0_scaffold232G43508 Striga asiatica HOM05D003212 ORTHO05D003959 1.9e-12 75.1 46 80.4
Gohir.A13G144600 Gossypium hirsutum HOM05D003212 ORTHO05D003959 2.5e-12 74.7 46 80.4
Gohir.D13G149300 Gossypium hirsutum HOM05D003212 ORTHO05D003959 2.5e-12 74.7 46 80.4
Gorai.013G167000 Gossypium raimondii HOM05D003212 ORTHO05D003959 2.5e-12 74.7 46 80.4
PSO384G1532 Papaver somniferum HOM05D003212 ORTHO05D003959 2.5e-12 74.7 46 80.4
Hund13345 Selenicereus undatus HOM05D003212 ORTHO05D003959 2.5e-12 74.7 46 80.4
Atru.chr12.1386 Acer truncatum HOM05D003212 ORTHO05D003959 3.3e-12 74.3 46 78.3
Ah.12g062950 Amaranthus hybridus HOM05D003212 ORTHO05D003959 3.3e-12 74.3 46 80.4
AL5G35520 Arabidopsis lyrata HOM05D003212 ORTHO05D003959 3.3e-12 74.3 46 80.4
AT3G54470 Arabidopsis thaliana HOM05D003212 ORTHO05D003959 3.3e-12 74.3 46 80.4
arahy.Tifrunner.gnm1.ann1.J24RTT Arachis hypogaea HOM05D003212 ORTHO05D003959 3.3e-12 74.3 46 76.1
COL.COLO4_09453 Corchorus olitorius HOM05D003212 ORTHO05D003959 3.3e-12 74.3 46 78.3
MD17G1257300 Malus domestica HOM05D003212 ORTHO05D003959 3.3e-12 74.3 46 82.6
Sp5g07950 Schrenkiella parvula HOM05D003212 ORTHO05D003959 3.3e-12 74.3 46 80.4
arahy.Tifrunner.gnm1.ann1.HRMJ8R Arachis hypogaea HOM05D003212 ORTHO05D003959 4.3e-12 73.9 46 78.3
Ca_10473_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 4.3e-12 73.9 46 76.1
SGA_v2.0_scaffold124G33627 Striga asiatica HOM05D003212 ORTHO05D003959 4.3e-12 73.9 46 80.4
Atru.chr12.1389 Acer truncatum HOM05D003212 ORTHO05D003959 5.6e-12 73.6 46 78.3
arahy.Tifrunner.gnm1.ann1.HVGJ4H Arachis hypogaea HOM05D003212 ORTHO05D003959 5.6e-12 73.6 46 78.3
ECA232G0145 Erigeron canadensis HOM05D003212 ORTHO05D003959 5.6e-12 73.6 46 76.1
ECA248G3712 Erigeron canadensis HOM05D003212 ORTHO05D003959 5.6e-12 73.6 46 76.1
Manes.11G004200 Manihot esculenta HOM05D003212 ORTHO05D003959 5.6e-12 73.6 46 78.3
Sabra01G0019400 Salix brachista HOM05D003212 ORTHO05D003959 5.6e-12 73.6 46 78.3
EL10Ac2g02822 Beta vulgaris HOM05D003212 ORTHO05D003959 7.3e-12 73.2 46 80.4
A07p22130 Brassica napus HOM05D003212 ORTHO05D003959 7.3e-12 73.2 46 78.3
CARHR164370 Cardamine hirsuta HOM05D003212 ORTHO05D003959 7.3e-12 73.2 46 78.3
AUR62003805 Chenopodium quinoa HOM05D003212 ORTHO05D003959 7.3e-12 73.2 43 83.7
Gohir.A04G028000 Gossypium hirsutum HOM05D003212 ORTHO05D003959 7.3e-12 73.2 46 76.1
Lalb_Chr03g0032831 Lupinus albus HOM05D003212 ORTHO05D003959 7.3e-12 73.2 46 76.1
PSO339G4798 Papaver somniferum HOM05D003212 ORTHO05D003959 7.3e-12 73.2 46 80.4
Hund15723 Selenicereus undatus HOM05D003212 ORTHO05D003959 7.3e-12 73.2 46 78.3
Thecc.07G075400 Theobroma cacao HOM05D003212 ORTHO05D003959 7.3e-12 73.2 46 78.3
arahy.Tifrunner.gnm1.ann1.28N5NC Arachis hypogaea HOM05D003212 ORTHO05D003959 9.5e-12 72.8 46 73.9
AUR62001997 Chenopodium quinoa HOM05D003212 ORTHO05D003959 9.5e-12 72.8 43 81.4
Duzib213G0398 Durio zibethinus HOM05D003212 ORTHO05D003959 9.5e-12 72.8 46 76.1
Thhalv10010334m.g Eutrema salsugineum HOM05D003212 ORTHO05D003959 9.5e-12 72.8 46 78.3
Medtr8g038390 Medicago truncatula HOM05D003212 ORTHO05D003959 9.5e-12 72.8 46 80.4
BraA07t29896Z Brassica rapa HOM05D003212 ORTHO05D003959 1.2e-11 72.4 46 78.3
Psat0s1718g0040 Pisum sativum HOM05D003212 ORTHO05D003959 1.2e-11 72.4 46 73.9
Carub.0005s2109 Capsella rubella HOM05D003212 ORTHO05D003959 1.6e-11 72.0 46 78.3
Mapoly0052s0107 Marchantia polymorpha HOM05D003212 ORTHO05D003959 1.6e-11 72.0 46 76.1
TPR.G36892 Trifolium pratense HOM05D003212 ORTHO05D003959 1.6e-11 72.0 46 76.1
BcaC02g09067 Brassica carinata HOM05D003212 ORTHO05D003959 2.1e-11 71.6 46 76.1
BcaC02g12603 Brassica carinata HOM05D003212 ORTHO05D003959 2.1e-11 71.6 46 76.1
BcaC08g44683 Brassica carinata HOM05D003212 ORTHO05D003959 2.1e-11 71.6 46 76.1
A04p05360 Brassica napus HOM05D003212 ORTHO05D003959 2.1e-11 71.6 46 76.1
C04p38050 Brassica napus HOM05D003212 ORTHO05D003959 2.1e-11 71.6 46 76.1
C06p22180 Brassica napus HOM05D003212 ORTHO05D003959 2.1e-11 71.6 46 76.1
BolC4t25379H Brassica oleracea HOM05D003212 ORTHO05D003959 2.1e-11 71.6 46 76.1
BolC6t37404H Brassica oleracea HOM05D003212 ORTHO05D003959 2.1e-11 71.6 46 76.1
BraA04t16236Z Brassica rapa HOM05D003212 ORTHO05D003959 2.1e-11 71.6 46 76.1
CiPaw.14G006800 Carya illinoinensis HOM05D003212 ORTHO05D003959 2.1e-11 71.6 46 78.3
Haze_03071 Corylus avellana HOM05D003212 ORTHO05D003959 2.1e-11 71.6 46 78.3
Gohir.D05G360100 Gossypium hirsutum HOM05D003212 ORTHO05D003959 2.1e-11 71.6 46 73.9
Gorai.009G432600 Gossypium raimondii HOM05D003212 ORTHO05D003959 2.1e-11 71.6 46 73.9
BcaB02g07736 Brassica carinata HOM05D003212 ORTHO05D003959 2.8e-11 71.2 46 76.1
BcaB02g08443 Brassica carinata HOM05D003212 ORTHO05D003959 2.8e-11 71.2 46 73.9
CAN.G745.39 Capsicum annuum HOM05D003212 ORTHO05D003959 2.8e-11 71.2 46 78.3
HanXRQChr01g0008251 Helianthus annuus HOM05D003212 ORTHO05D003959 2.8e-11 71.2 46 73.9
Potri.003G198501 Populus trichocarpa HOM05D003212 ORTHO05D003959 2.8e-11 71.2 46 73.9
Potri.T125906 Populus trichocarpa HOM05D003212 ORTHO05D003959 2.8e-11 71.2 46 73.9
QL04p014524 Quercus lobata HOM05D003212 ORTHO05D003959 2.8e-11 71.2 46 73.9
QL04p014886 Quercus lobata HOM05D003212 ORTHO05D003959 2.8e-11 71.2 46 73.9
Sabra03G0147800 Salix brachista HOM05D003212 ORTHO05D003959 2.8e-11 71.2 46 73.9
CDE08G1532 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 3.6e-11 70.9 46 76.1
Ca_28375_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 4.7e-11 70.5 46 73.9
Ca_30130_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 4.7e-11 70.5 46 73.9
CDE09G0923 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 6.2e-11 70.1 46 73.9
HanXRQChr13g0406671 Helianthus annuus HOM05D003212 ORTHO05D003959 6.2e-11 70.1 46 71.7
Pp3c3_16990 Physcomitrium patens HOM05D003212 ORTHO05D003959 6.2e-11 70.1 46 78.3
Duzib268G1229 Durio zibethinus HOM05D003212 ORTHO05D003959 1.1e-10 69.3 46 71.7
Sc11g0006540 Simmondsia chinensis HOM05D003212 ORTHO05D003959 1.8e-10 68.6 46 78.3
HPP92_003228 Vanilla planifolia HOM05D003212 ORTHO05D003959 1.8e-10 68.6 46 67.4
HPP92_003235 Vanilla planifolia HOM05D003212 ORTHO05D003959 1.8e-10 68.6 46 67.4
AUR62026849 Chenopodium quinoa HOM05D003212 ORTHO05D003959 2.3e-10 68.2 46 76.1
AUR62037200 Chenopodium quinoa HOM05D003212 ORTHO05D003959 2.3e-10 68.2 46 76.1
Zm00001eb140940 Zea mays HOM05D003212 ORTHO05D003959 4.0e-10 67.4 46 73.9
AagrBONN_evm.TU.Sc2ySwM_117.3888 Anthoceros agrestis HOM05D003212 ORTHO05D003959 5.2e-10 67.0 46 69.6
SMO259G0031 Selaginella moellendorffii HOM05D003212 ORTHO05D003959 5.2e-10 67.0 46 73.9
SEGI_05174 Sequoiadendron giganteum HOM05D003212 ORTHO05D003959 5.2e-10 67.0 46 69.6
Cre01.g048950 Chlamydomonas reinhardtii HOM05D003212 ORTHO05D003959 8.9e-10 66.2 46 71.7
MCO07G762 Micromonas commoda HOM05D003212 ORTHO05D003959 2.0e-09 65.1 46 67.4
CBR_g41363 Chara braunii HOM05D003212 ORTHO05D003959 4.4e-09 63.9 44 72.7
PRCOL_00000883 Prasinoderma coloniale HOM05D003212 ORTHO05D003959 4.4e-09 63.9 46 67.4
Atru.chr12.1029 Acer truncatum HOM05D003212 ORTHO05D003959 5.8e-09 63.5 43 72.1
Os01g0951200 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 1.3e-08 62.4 46 69.6
SMO181G0021 Selaginella moellendorffii HOM05D003212 ORTHO05D003959 1.7e-08 62.0 43 72.1
Pp3c13_16830 Physcomitrium patens HOM05D003212 ORTHO05D003959 6.4e-08 60.1 46 71.7
Ciclev10004916m.g Citrus clementina HOM05D003212 ORTHO05D003959 1.1e-07 59.3 33 81.8


User provided reference genes

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