Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0023571 Rosa chinensis HOM05D003293 ORTHO05D022248 4.1e-81 304.7 154 100.0
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 5.5e-70 267.7 172 83.7
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 7.0e-65 250.8 172 77.3
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 9.1e-65 250.4 172 77.3
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 4.5e-64 248.1 172 76.7
RcHm_v2.0_Chr2g0101951 Rosa chinensis HOM05D003293 ORTHO05D013446 4.5e-64 248.1 166 80.1
RcHm_v2.0_Chr3g0493461 Rosa chinensis HOM05D003293 ORTHO05D013446 4.5e-64 248.1 166 80.1
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 2.3e-63 245.7 172 76.2
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 2.9e-63 245.4 172 75.6
RcHm_v2.0_Chr7g0238791 Rosa chinensis HOM05D003293 ORTHO05D013446 2.9e-63 245.4 166 79.5
RcHm_v2.0_Chr4g0402021 Rosa chinensis HOM05D003293 ORTHO05D013446 5.0e-63 244.6 166 79.5
RcHm_v2.0_Chr1g0350061 Rosa chinensis HOM05D003293 ORTHO05D013446 1.1e-62 243.4 166 78.9
RcHm_v2.0_Chr7g0234111 Rosa chinensis HOM05D003293 ORTHO05D013446 4.1e-57 224.9 152 77.6
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 2.7e-56 222.2 172 68.0
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 5.9e-56 221.1 172 67.4
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 1.0e-55 220.3 170 68.8
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 4.3e-54 214.9 172 66.3
RcHm_v2.0_Chr7g0239601 Rosa chinensis HOM05D003293 ORTHO05D013446 2.2e-42 176.0 108 82.4
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 1.6e-40 169.9 171 53.8
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 4.6e-40 168.3 171 55.0
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 3.0e-39 165.6 171 53.2
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 6.6e-39 164.5 171 53.2
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 5.2e-36 154.8 172 51.7
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 1.2e-35 153.7 171 52.0
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 2.6e-35 152.5 172 52.3
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 2.6e-35 152.5 181 53.0
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 9.9e-35 150.6 172 49.4
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 1.3e-34 150.2 172 51.2
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 6.4e-34 147.9 175 48.0
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 8.4e-34 147.5 174 47.7
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 1.9e-33 146.4 172 48.3
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 1.2e-32 143.7 171 49.7
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 1.2e-32 143.7 173 48.6
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 2.1e-32 142.9 172 47.1
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 2.1e-32 142.9 175 50.9
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 2.1e-32 142.9 172 48.3
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 2.7e-32 142.5 174 47.7
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 2.7e-32 142.5 171 48.5
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 3.5e-32 142.1 164 49.4
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 3.5e-32 142.1 164 49.4
Actinidia12755 Actinidia chinensis HOM05D003293 ORTHO05D005060 6.0e-32 141.4 172 47.7
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 7.8e-32 141.0 175 46.3
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 1.0e-31 140.6 164 48.8
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 1.0e-31 140.6 173 51.4
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 1.7e-31 139.8 175 50.9
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 2.3e-31 139.4 172 47.1
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 2.3e-31 139.4 172 47.7
Actinidia24661 Actinidia chinensis HOM05D003293 ORTHO05D005060 3.0e-31 139.0 173 46.8
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 3.0e-31 139.0 164 47.6
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 5.1e-31 138.3 171 48.0
TAR629G2219 Trochodendron aralioides HOM05D003293 ORTHO05D005060 6.6e-31 137.9 172 48.3
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 1.5e-30 136.7 171 47.4
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 1.5e-30 136.7 171 44.4
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 1.9e-30 136.3 172 49.4
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 3.3e-30 135.6 172 48.8
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 9.6e-30 134.0 172 47.7
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 9.6e-30 134.0 171 45.6
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 2.1e-29 132.9 171 45.0
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 2.8e-29 132.5 172 47.7
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 6.2e-29 131.3 174 46.6
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 8.1e-29 131.0 173 46.2
CSS0010168 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.4e-28 130.2 174 46.0
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.4e-28 130.2 174 46.0
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 1.4e-28 130.2 173 45.1
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 1.4e-28 130.2 176 46.0
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 3.1e-28 129.0 171 43.3
Sc08g0001770 Simmondsia chinensis HOM05D003293 ORTHO05D005060 3.1e-28 129.0 173 46.8
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 4.0e-28 128.6 172 43.6
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 5.2e-28 128.3 174 45.4
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 5.2e-28 128.3 172 45.9
Nitab4.5_0000515g0130 Nicotiana tabacum HOM05D003293 ORTHO05D005060 5.2e-28 128.3 174 43.7
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 5.2e-28 128.3 173 43.9
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 6.8e-28 127.9 172 44.2
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 8.9e-28 127.5 172 42.4
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 1.2e-27 127.1 173 45.1
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 1.2e-27 127.1 173 45.1
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.2e-27 127.1 176 42.6
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.2e-27 127.1 176 42.6
ECA232G2754 Erigeron canadensis HOM05D003293 ORTHO05D005060 1.5e-27 126.7 172 45.9
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 1.5e-27 126.7 171 43.3
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 2.0e-27 126.3 174 42.5
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 2.6e-27 125.9 172 43.6
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 2.6e-27 125.9 174 44.8
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 3.4e-27 125.6 174 42.5
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 4.4e-27 125.2 172 42.4
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 4.4e-27 125.2 174 42.0
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 4.4e-27 125.2 172 43.0
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 4.4e-27 125.2 175 42.9
CSS0006105 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 5.8e-27 124.8 174 44.8
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 5.8e-27 124.8 172 44.8
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 5.8e-27 124.8 157 43.9
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 9.9e-27 124.0 174 42.0
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 9.9e-27 124.0 174 41.4
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 1.3e-26 123.6 174 42.0
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 1.3e-26 123.6 174 42.0
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 1.7e-26 123.2 172 43.6
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 1.7e-26 123.2 176 42.0
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 1.7e-26 123.2 176 44.3
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 2.2e-26 122.9 174 42.0
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 2.2e-26 122.9 172 43.0
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 2.9e-26 122.5 174 42.0
AUR62005030 Chenopodium quinoa HOM05D003293 ORTHO05D005060 2.9e-26 122.5 172 43.6
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 2.9e-26 122.5 175 41.1
Cpa.g.c31787.1 Carica papaya HOM05D003293 ORTHO05D005060 3.8e-26 122.1 175 42.3
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 4.9e-26 121.7 174 41.4
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 4.9e-26 121.7 174 41.4
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 8.4e-26 120.9 172 44.2
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 8.4e-26 120.9 172 44.8
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 1.1e-25 120.6 174 41.4
AUR62011946 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.1e-25 120.6 172 43.0
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.1e-25 120.6 172 43.6
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 1.1e-25 120.6 177 42.4
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 1.1e-25 120.6 172 42.4
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 1.9e-25 119.8 175 42.3
PSO675G5548 Papaver somniferum HOM05D003293 ORTHO05D005060 1.9e-25 119.8 173 42.2
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 2.4e-25 119.4 175 42.3
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 2.4e-25 119.4 161 46.6
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 3.2e-25 119.0 172 41.9
HanXRQChr14g0433351 Helianthus annuus HOM05D003293 ORTHO05D005060 4.2e-25 118.6 173 43.4
RcHm_v2.0_Chr3g0468611 Rosa chinensis HOM05D003293 ORTHO05D013446 1.2e-24 117.1 128 54.7
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 2.1e-24 116.3 175 41.1
Thecc.09G018800 Theobroma cacao HOM05D003293 ORTHO05D005060 3.5e-24 115.5 172 44.2
RcHm_v2.0_Chr2g0155871 Rosa chinensis HOM05D003293 ORTHO05D013446 6.0e-24 114.8 85 72.9
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 1.3e-23 113.6 176 41.5
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 1.3e-23 113.6 176 41.5
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 1.3e-23 113.6 176 41.5
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 1.3e-23 113.6 176 41.5
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 1.3e-23 113.6 176 41.5
RcHm_v2.0_Chr4g0401281 Rosa chinensis HOM05D003293 ORTHO05D013446 1.3e-23 113.6 85 72.9
RcHm_v2.0_Chr7g0231801 Rosa chinensis HOM05D003293 ORTHO05D013446 2.3e-23 112.8 85 71.8
Sp5g34520 Schrenkiella parvula HOM05D003293 ORTHO05D005060 2.3e-23 112.8 176 41.5
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 5.1e-23 111.7 173 42.8
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 1.1e-22 110.5 176 39.8
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 1.1e-22 110.5 176 40.3
AT1G79470 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 1.9e-22 109.8 176 38.6
CARHR073130 Cardamine hirsuta HOM05D003293 ORTHO05D005060 1.9e-22 109.8 175 38.9
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 1.9e-22 109.8 172 40.1
AL2G40080 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 2.5e-22 109.4 175 38.3
Cc04_g12410 Coffea canephora HOM05D003293 ORTHO05D005060 2.5e-22 109.4 185 37.8
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 2.5e-22 109.4 173 39.9
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 1.3e-21 107.1 176 38.1
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 1.3e-21 107.1 173 41.0
Cfa011413 Carpinus fangiana HOM05D003293 ORTHO05D022248 2.8e-21 105.9 95 60.0
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 6.9e-20 101.3 172 37.2
Cfa011750 Carpinus fangiana HOM05D003293 ORTHO05D022248 3.4e-19 99.0 105 51.4
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 4.4e-19 98.6 171 38.6
GSVIVG01036725001 Vitis vinifera HOM05D003293 ORTHO05D005060 7.6e-19 97.8 155 42.6
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 9.9e-19 97.4 171 39.2
QL08p009748 Quercus lobata HOM05D003293 ORTHO05D022248 2.9e-18 95.9 108 54.6
Mapoly0102s0045 Marchantia polymorpha HOM05D003293 ORTHO05D005060 1.9e-17 93.2 172 36.0
Os03g0780500 Oryza sativa ssp. japonica HOM05D003293 ORTHO05D005060 1.9e-17 93.2 170 38.8
SEGI_05687 Sequoiadendron giganteum HOM05D003293 ORTHO05D005060 5.6e-14 81.6 171 36.3
Cfa014115 Carpinus fangiana HOM05D003293 ORTHO05D022248 1.3e-13 80.5 72 54.2
Pp3c1_34070 Physcomitrium patens HOM05D003293 ORTHO05D005060 2.1e-13 79.7 172 33.1
Cfa005199 Carpinus fangiana HOM05D003293 ORTHO05D022248 2.8e-13 79.3 80 51.2
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 4.0e-12 75.5 173 34.1
AagrBONN_evm.TU.Sc2ySwM_362.951 Anthoceros agrestis HOM05D003293 ORTHO05D005060 6.9e-12 74.7 172 33.7
Pp3c14_26610 Physcomitrium patens HOM05D003293 ORTHO05D005060 9.0e-12 74.3 171 31.6
MCO03G303 Micromonas commoda HOM05D003293 ORTHO05D005060 7.6e-11 71.2 145 33.1
Haze_26254 Corylus avellana HOM05D003293 ORTHO05D005060 1.9e-09 66.6 121 38.0
Oeu033076.1 Olea europaea HOM05D003293 ORTHO05D005060 2.4e-09 66.2 155 31.6
Cfa025892 Carpinus fangiana HOM05D003293 ORTHO05D005060 3.5e-08 62.4 106 37.7
HPP92_020647 Vanilla planifolia HOM05D003293 ORTHO05D022256 1.8e-07 60.1 58 51.7
Nitab4.5_0005442g0040 Nicotiana tabacum HOM05D003293 ORTHO05D005060 6.7e-07 58.2 149 28.9
Cre14.g614300 Chlamydomonas reinhardtii HOM05D003293 ORTHO05D005060 8.7e-07 57.8 113 31.9


User provided reference genes

Program Settings