Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0022751 Rosa chinensis HOM05D004211 ORTHO05D005559 1.2e-29 132.5 64 100.0
RcHm_v2.0_Chr5g0022861 Rosa chinensis HOM05D004211 ORTHO05D005559 3.4e-21 104.4 53 92.5
RcHm_v2.0_Chr5g0022911 Rosa chinensis HOM05D004211 ORTHO05D005559 3.4e-21 104.4 53 92.5
FAN21G1437 Fragaria x ananassa HOM05D004211 ORTHO05D005559 9.8e-21 102.8 53 90.6
FAN11G0244 Fragaria x ananassa HOM05D004211 ORTHO05D005559 2.9e-20 101.3 53 88.7
FAN16G2270 Fragaria x ananassa HOM05D004211 ORTHO05D005559 2.9e-20 101.3 53 88.7
FvH4_3g13640 Fragaria vesca HOM05D004211 ORTHO05D005559 4.9e-20 100.5 53 88.7
RcHm_v2.0_Chr5g0022841 Rosa chinensis HOM05D004211 ORTHO05D005559 4.1e-19 97.4 53 88.7
RcHm_v2.0_Chr5g0022551 Rosa chinensis HOM05D004211 ORTHO05D005559 7.0e-19 96.7 53 86.8
RcHm_v2.0_Chr5g0022711 Rosa chinensis HOM05D004211 ORTHO05D005559 7.0e-19 96.7 53 86.8
RcHm_v2.0_Chr5g0022761 Rosa chinensis HOM05D004211 ORTHO05D005559 1.3e-17 92.4 53 84.9
Actinidia03629 Actinidia chinensis HOM05D004211 ORTHO05D005559 1.0e-14 82.8 51 70.6
vmacro09759 Vaccinium macrocarpon HOM05D004211 ORTHO05D005559 1.4e-14 82.4 51 70.6
Haze_18447 Corylus avellana HOM05D004211 ORTHO05D005559 1.8e-14 82.0 50 70.0
Manes.03G076000 Manihot esculenta HOM05D004211 ORTHO05D005559 1.8e-14 82.0 49 73.5
Oeu017915.1 Olea europaea HOM05D000936 ORTHO05D005107 2.3e-14 81.6 52 69.2
CSS0016871 Camellia sinensis var. sinensis HOM05D004211 ORTHO05D005559 3.1e-14 81.3 51 68.6
MBI07_g10940_MAGBIO Magnolia biondii HOM05D004211 ORTHO05D005559 3.1e-14 81.3 45 75.6
Rhsim04G0003800 Rhododendron simsii HOM05D004211 ORTHO05D005559 4.0e-14 80.9 51 68.6
Prupe.4G124000 Prunus persica HOM05D004211 ORTHO05D005559 5.2e-14 80.5 52 71.2
Cfa017780 Carpinus fangiana HOM05D004211 ORTHO05D005559 6.8e-14 80.1 50 68.0
Lj3g0001249 Lotus japonicus HOM05D004211 ORTHO05D005559 8.9e-14 79.7 52 65.4
MBI10_g30432_MAGBIO Magnolia biondii HOM05D004211 ORTHO05D005559 8.9e-14 79.7 45 71.1
Aqoxy1G01339 Aquilegia oxysepala HOM05D004211 ORTHO05D005559 1.2e-13 79.3 51 64.7
QL04p096598 Quercus lobata HOM05D004211 ORTHO05D005559 1.2e-13 79.3 50 68.0
Dinv42448 Davidia involucrata HOM05D004211 ORTHO05D005559 1.5e-13 79.0 49 67.3
TAR626G0199 Trochodendron aralioides HOM05D004211 ORTHO05D005559 1.5e-13 79.0 50 66.0
MSTRG.14576 Avicennia marina HOM05D004211 ORTHO05D005559 2.0e-13 78.6 50 66.0
Hma1.2p1_0151F.1_g066910 Hydrangea macrophylla HOM05D004211 ORTHO05D005559 2.6e-13 78.2 43 74.4
GSVIVG01036686001 Vitis vinifera HOM05D004211 ORTHO05D005559 2.6e-13 78.2 51 64.7
BcaC05g29248 Brassica carinata HOM05D004211 ORTHO05D005559 3.4e-13 77.8 49 65.3
C05p55270 Brassica napus HOM05D004211 ORTHO05D005559 3.4e-13 77.8 49 65.3
BolC5t34192H Brassica oleracea HOM05D004211 ORTHO05D005559 3.4e-13 77.8 49 65.3
TAR624G1163 Trochodendron aralioides HOM05D004211 ORTHO05D005559 4.4e-13 77.4 49 65.3
Peaxi162Scf00006g00236 Petunia axillaris HOM05D004211 ORTHO05D005559 5.8e-13 77.0 45 73.3
COL.COLO4_32272 Corchorus olitorius HOM05D004211 ORTHO05D005559 7.5e-13 76.6 51 62.7
A05p36820 Brassica napus HOM05D004211 ORTHO05D005559 9.8e-13 76.3 51 62.7
Thecc.07G193200 Theobroma cacao HOM05D004211 ORTHO05D005559 1.3e-12 75.9 51 60.8
Cc00_g09050 Coffea canephora HOM05D004211 ORTHO05D005559 1.7e-12 75.5 53 64.2
Nitab4.5_0000007g0420 Nicotiana tabacum HOM05D004211 ORTHO05D005559 2.9e-12 74.7 51 64.7
Nitab4.5_0001995g0020 Nicotiana tabacum HOM05D004211 ORTHO05D005559 2.9e-12 74.7 51 64.7
Duzib187G0086 Durio zibethinus HOM05D004211 ORTHO05D005559 3.7e-12 74.3 48 64.6
Nn7g38427 Nelumbo nucifera HOM05D004211 ORTHO05D005559 6.4e-12 73.6 44 65.9
Solyc12g017410.2 Solanum lycopersicum HOM05D004211 ORTHO05D005559 6.4e-12 73.6 50 62.0
BcaB06g25524 Brassica carinata HOM05D004211 ORTHO05D005559 8.3e-12 73.2 51 64.7
BraA05t22483Z Brassica rapa HOM05D004211 ORTHO05D005559 8.3e-12 73.2 46 65.2
CAN.G87.6 Capsicum annuum HOM05D004211 ORTHO05D005559 8.3e-12 73.2 47 66.0
HanXRQChr11g0335901 Helianthus annuus HOM05D004211 ORTHO05D005559 8.3e-12 73.2 43 72.1
PGR031G0396 Punica granatum HOM05D004211 ORTHO05D005559 8.3e-12 73.2 47 66.0
CDE10G0204 Ceratophyllum demersum HOM05D004211 ORTHO05D005559 1.1e-11 72.8 42 73.8
CDE10G1027 Ceratophyllum demersum HOM05D004211 ORTHO05D005559 1.4e-11 72.4 42 71.4
SGA_v2.0_scaffold186G40165 Striga asiatica HOM05D004211 ORTHO05D005559 3.2e-11 71.2 51 56.9
HPP92_024149 Vanilla planifolia HOM05D004211 ORTHO05D005559 3.2e-11 71.2 53 60.4
HPP92_024197 Vanilla planifolia HOM05D004211 ORTHO05D005559 3.2e-11 71.2 53 60.4
CARHR087190 Cardamine hirsuta HOM05D004211 ORTHO05D005559 4.1e-11 70.9 47 66.0
CDE04G2037 Ceratophyllum demersum HOM05D004211 ORTHO05D005559 4.1e-11 70.9 41 70.7
Ca_26791_v3 Cicer arietinum L. HOM05D004211 ORTHO05D005559 4.1e-11 70.9 63 52.4
Sp3g10830 Schrenkiella parvula HOM05D004211 ORTHO05D005559 4.1e-11 70.9 49 63.3
Actinidia00850 Actinidia chinensis HOM05D004211 ORTHO05D005559 5.4e-11 70.5 51 62.7
Potri.010G176300 Populus trichocarpa HOM05D004211 ORTHO05D005559 5.4e-11 70.5 41 70.7
SGA_v2.0_scaffold7G03646 Striga asiatica HOM05D004211 ORTHO05D005559 5.4e-11 70.5 47 61.7
Migut.M01488 Erythranthe guttata HOM05D004211 ORTHO05D005559 7.0e-11 70.1 46 58.7
AL3G24350 Arabidopsis lyrata HOM05D004211 ORTHO05D005559 9.2e-11 69.7 42 66.7
AT3G12680 Arabidopsis thaliana HOM05D004211 ORTHO05D005559 9.2e-11 69.7 42 66.7
MD10G1219700 Malus domestica HOM05D004211 ORTHO05D005559 9.2e-11 69.7 52 65.4
Manes.16G055032 Manihot esculenta HOM05D004211 ORTHO05D005559 9.2e-11 69.7 49 61.2
Sabra10G0135700 Salix brachista HOM05D000936 ORTHO05D001411 9.2e-11 69.7 36 77.8
Carub.0003s1203 Capsella rubella HOM05D004211 ORTHO05D005559 1.2e-10 69.3 42 66.7
HanXRQChr07g0190701 Helianthus annuus HOM05D004211 ORTHO05D005559 1.2e-10 69.3 41 68.3
Lsat_1_v5_gn_7_111061 Lactuca sativa HOM05D004211 ORTHO05D005559 1.2e-10 69.3 46 63.0
PSO541G3994 Papaver somniferum HOM05D004211 ORTHO05D005559 1.2e-10 69.3 47 61.7
SalBow8G2375 Salvia bowleyana HOM05D000936 ORTHO05D005107 1.2e-10 69.3 47 63.8
Psat4g186640 Pisum sativum HOM05D004211 ORTHO05D005559 1.6e-10 68.9 49 59.2
Sabra08G0059800 Salix brachista HOM05D004211 ORTHO05D005559 1.6e-10 68.9 37 75.7
Sopen12g008190 Solanum pennellii HOM05D004211 ORTHO05D005559 1.6e-10 68.9 50 62.0
DCAR_019902 Daucus carota HOM05D004211 ORTHO05D005559 2.0e-10 68.6 41 68.3
Thhalv10020494m.g Eutrema salsugineum HOM05D004211 ORTHO05D005559 2.7e-10 68.2 49 61.2
CBR_g24052 Chara braunii HOM05D004211 ORTHO05D005559 3.5e-10 67.8 51 52.9
Potri.008G080300 Populus trichocarpa HOM05D004211 ORTHO05D005559 4.6e-10 67.4 36 75.0
ATR0073G009 Amborella trichopoda HOM05D004211 ORTHO05D005559 6.0e-10 67.0 47 57.4
THA.LOC104816139 Tarenaya hassleriana HOM05D004211 ORTHO05D005559 1.0e-09 66.2 40 70.0
Aa31LG8G30 Aethionema arabicum HOM05D004211 ORTHO05D005559 1.3e-09 65.9 44 59.1
ECA236G1665 Erigeron canadensis HOM05D000936 ORTHO05D005107 2.3e-09 65.1 37 70.3
RcHm_v2.0_Chr5g0022731 Rosa chinensis HOM05D004211 ORTHO05D005559 2.3e-09 65.1 32 84.4
RcHm_v2.0_Chr5g0022581 Rosa chinensis HOM05D004211 ORTHO05D005559 5.0e-09 63.9 32 81.2
AUR62026900 Chenopodium quinoa HOM05D004211 ORTHO05D005559 1.1e-08 62.8 45 53.3
AUR62040881 Chenopodium quinoa HOM05D004211 ORTHO05D005559 1.1e-08 62.8 45 53.3
THA.LOC104826401 Tarenaya hassleriana HOM05D004211 ORTHO05D005559 1.9e-08 62.0 46 54.3
Pp3c1_12940 Physcomitrium patens HOM05D004211 ORTHO05D005559 7.3e-08 60.1 46 47.8
Pp3c2_24140 Physcomitrium patens HOM05D004211 ORTHO05D005559 7.3e-08 60.1 46 47.8
Ah.16g106500 Amaranthus hybridus HOM05D004211 ORTHO05D005559 1.6e-07 58.9 51 51.0
EL10Ac2g03339 Beta vulgaris HOM05D004211 ORTHO05D005559 3.6e-07 57.8 42 52.4
Cpa.g.sc118.25 Carica papaya HOM05D004211 ORTHO05D005559 6.2e-07 57.0 57 49.1
Os01g0616400 Oryza sativa ssp. japonica HOM05D004211 ORTHO05D005559 8.1e-07 56.6 41 48.8


User provided reference genes

Program Settings