Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 5.2e-142 507.7 254 100.0
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 1.5e-133 479.6 254 94.5
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 9.9e-133 476.9 254 94.1
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 6.4e-132 474.2 254 94.1
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.4e-131 473.0 254 93.3
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 2.3e-129 465.7 254 92.9
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 2.7e-122 442.2 249 88.4
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 1.8e-118 429.5 254 84.3
CiPaw.01G263700 Carya illinoinensis HOM05D006345 ORTHO05D007428 1.1e-112 410.2 250 80.8
Dinv19690 Davidia involucrata HOM05D006345 ORTHO05D007428 1.2e-109 400.2 258 77.5
Rhsim13G0136400 Rhododendron simsii HOM05D006345 ORTHO05D007428 3.8e-108 395.2 258 77.1
CsaV3_7G007230 Cucumis sativus L. HOM05D006345 ORTHO05D007428 8.4e-108 394.0 253 77.9
Sed0021159 Sechium edule HOM05D006345 ORTHO05D007428 1.9e-107 392.9 253 77.1
ClCG02G007550 Citrullus lanatus HOM05D006345 ORTHO05D007428 2.5e-107 392.5 253 77.1
Sed0017834 Sechium edule HOM05D006345 ORTHO05D007428 3.2e-107 392.1 252 77.0
MELO3C018575.2 Cucumis melo HOM05D006345 ORTHO05D007428 5.5e-107 391.3 253 77.1
CSS0008102 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 9.3e-107 390.6 248 78.2
QL08p052794 Quercus lobata HOM05D006345 ORTHO05D007428 9.3e-107 390.6 255 77.3
Ciclev10016345m.g Citrus clementina HOM05D006345 ORTHO05D007428 1.8e-105 386.3 257 74.3
TAR624G0710 Trochodendron aralioides HOM05D006345 ORTHO05D007428 1.1e-104 383.6 255 76.1
Lalb_Chr07g0189941 Lupinus albus HOM05D006345 ORTHO05D007428 1.9e-104 382.9 253 74.7
Ca_19950_v3 Cicer arietinum L. HOM05D006345 ORTHO05D007428 7.4e-104 380.9 254 74.8
Duzib212G0272 Durio zibethinus HOM05D006345 ORTHO05D007428 1.3e-103 380.2 248 75.4
Potri.001G073700 Populus trichocarpa HOM05D006345 ORTHO05D007428 1.6e-103 379.8 255 74.1
CiPaw.14G048700 Carya illinoinensis HOM05D006345 ORTHO05D007428 2.2e-103 379.4 234 79.1
Manes.16G061100 Manihot esculenta HOM05D006345 ORTHO05D007428 2.8e-103 379.0 255 73.3
Sabra01G0052000 Salix brachista HOM05D006345 ORTHO05D007428 3.7e-103 378.6 255 73.7
Glyma.03G027700 Glycine max HOM05D006345 ORTHO05D007428 6.3e-103 377.9 253 75.1
Nn3g17198 Nelumbo nucifera HOM05D006345 ORTHO05D007428 8.2e-103 377.5 255 71.8
Lj3g0013440 Lotus japonicus HOM05D006345 ORTHO05D007428 3.1e-102 375.6 252 74.2
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 5.3e-102 374.8 252 74.2
Cpa.g.sc12.137 Carica papaya HOM05D006345 ORTHO05D007428 6.9e-102 374.4 254 73.6
Psat7g230920 Pisum sativum HOM05D006345 ORTHO05D007428 6.9e-102 374.4 254 73.2
Thecc.04G283900 Theobroma cacao HOM05D006345 ORTHO05D007428 9.0e-102 374.0 257 72.4
Glyma.01G139633 Glycine max HOM05D006345 ORTHO05D007428 1.2e-101 373.6 254 74.0
Phvul.003G037201 Phaseolus vulgaris HOM05D006345 ORTHO05D007428 1.5e-101 373.2 252 74.2
TPR.G7580 Trifolium pratense HOM05D006345 ORTHO05D007428 5.9e-101 371.3 253 73.5
arahy.Tifrunner.gnm1.ann1.P3RVZQ Arachis hypogaea HOM05D006345 ORTHO05D007428 3.8e-100 368.6 253 73.1
COL.COLO4_13882 Corchorus olitorius HOM05D006345 ORTHO05D007428 1.1e-99 367.1 256 71.5
arahy.Tifrunner.gnm1.ann1.G9BQRV Arachis hypogaea HOM05D006345 ORTHO05D007428 1.9e-99 366.3 253 72.7
Sc05g0003040 Simmondsia chinensis HOM05D006345 ORTHO05D007428 3.2e-99 365.5 254 70.9
VMungo1383G2204 Vigna mungo HOM05D006345 ORTHO05D007428 4.2e-99 365.2 253 72.3
DCAR_001254 Daucus carota HOM05D006345 ORTHO05D007428 7.2e-99 364.4 248 73.0
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 1.2e-98 363.6 253 71.9
Aqoxy7G02153 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 1.6e-98 363.2 248 70.2
arahy.Tifrunner.gnm1.ann1.S1VR06 Arachis hypogaea HOM05D006345 ORTHO05D007428 2.1e-98 362.8 253 71.9
Nitab4.5_0008647g0020 Nicotiana tabacum HOM05D006345 ORTHO05D007428 2.1e-98 362.8 225 77.8
Nitab4.5_0001925g0110 Nicotiana tabacum HOM05D006345 ORTHO05D007428 4.6e-98 361.7 224 77.2
Lalb_Chr13g0291791 Lupinus albus HOM05D006345 ORTHO05D007428 7.9e-98 360.9 252 72.2
PGR042G3945 Punica granatum HOM05D006345 ORTHO05D007428 2.3e-97 359.4 256 72.3
PGSC0003DMG400023836 Solanum tuberosum HOM05D006345 ORTHO05D007428 3.9e-97 358.6 220 78.6
Peaxi162Scf00062g10131 Petunia axillaris HOM05D006345 ORTHO05D007428 5.1e-97 358.2 224 76.8
ECA238G2485 Erigeron canadensis HOM05D006345 ORTHO05D007428 2.5e-96 355.9 248 69.8
PSO675G7514 Papaver somniferum HOM05D006345 ORTHO05D007428 4.3e-96 355.1 264 69.3
TWI53G2073 Tripterygium wilfordii HOM05D006345 ORTHO05D007428 4.3e-96 355.1 255 69.8
MBI16_g30839_MAGBIO Magnolia biondii HOM05D006345 ORTHO05D007428 9.7e-96 354.0 244 73.0
CAN.G575.62 Capsicum annuum HOM05D006345 ORTHO05D007428 1.3e-95 353.6 220 77.3
HanXRQChr14g0447431 Helianthus annuus HOM05D006345 ORTHO05D007428 2.2e-95 352.8 248 68.5
Eucgr.F03783 Eucalyptus grandis HOM05D006345 ORTHO05D007428 2.8e-95 352.4 254 70.1
Gorai.011G189500 Gossypium raimondii HOM05D006345 ORTHO05D007428 2.8e-95 352.4 257 68.5
Gohir.A10G163600 Gossypium hirsutum HOM05D006345 ORTHO05D007428 4.8e-95 351.7 248 70.6
Oeu017184.1 Olea europaea HOM05D006345 ORTHO05D007428 6.3e-95 351.3 263 69.2
PSO541G0968 Papaver somniferum HOM05D006345 ORTHO05D007428 8.2e-95 350.9 264 68.9
THA.LOC104822694 Tarenaya hassleriana HOM05D006345 ORTHO05D007428 1.8e-94 349.7 246 73.2
Oeu012935.1 Olea europaea HOM05D006345 ORTHO05D007428 5.3e-94 348.2 220 76.4
MSTRG.21400 Avicennia marina HOM05D006345 ORTHO05D007428 2.0e-93 346.3 238 72.3
Sopen12g034690 Solanum pennellii HOM05D006345 ORTHO05D007428 2.6e-93 345.9 220 75.5
CANSAT11G1250 Cannabis sativa HOM05D006345 ORTHO05D007428 4.5e-93 345.1 219 76.7
Gohir.D10G170000 Gossypium hirsutum HOM05D006345 ORTHO05D007428 4.5e-93 345.1 257 66.5
SalBow7G0027 Salvia bowleyana HOM05D006345 ORTHO05D007428 4.5e-93 345.1 223 74.9
Cc09_g04580 Coffea canephora HOM05D006345 ORTHO05D007428 2.2e-92 342.8 223 73.5
Cc06_g02140 Coffea canephora HOM05D006345 ORTHO05D007428 2.9e-92 342.4 258 66.3
EL10Ac3g05939 Beta vulgaris HOM05D006345 ORTHO05D007428 3.8e-92 342.0 257 65.8
Aa31LG8G650 Aethionema arabicum HOM05D006345 ORTHO05D007428 6.5e-92 341.3 245 68.2
Migut.D00572 Erythranthe guttata HOM05D006345 ORTHO05D007428 6.5e-92 341.3 256 66.0
SalBow2G1193 Salvia bowleyana HOM05D006345 ORTHO05D007428 1.1e-91 340.5 226 73.0
Aqoxy3G02382 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 2.5e-91 339.3 223 73.1
AUR62015383 Chenopodium quinoa HOM05D006345 ORTHO05D007428 3.2e-91 339.0 258 65.9
unitig_52.g17581 Utricularia gibba HOM05D006345 ORTHO05D007428 3.6e-90 335.5 258 65.1
Ah.07g202050 Amaranthus hybridus HOM05D006345 ORTHO05D007428 6.1e-90 334.7 258 64.3
AL3G25340 Arabidopsis lyrata HOM05D006345 ORTHO05D007428 6.1e-90 334.7 243 69.5
AT3G13440 Arabidopsis thaliana HOM05D006345 ORTHO05D007428 6.1e-90 334.7 243 68.7
Lsat_1_v5_gn_3_103240 Lactuca sativa HOM05D006345 ORTHO05D007428 1.0e-89 334.0 215 74.4
Ah.15g099610 Amaranthus hybridus HOM05D006345 ORTHO05D007428 3.0e-89 332.4 258 64.7
PSO782G3410 Papaver somniferum HOM05D006345 ORTHO05D007428 3.0e-89 332.4 230 73.5
BcaC09g48312 Brassica carinata HOM05D006345 ORTHO05D007428 1.1e-88 330.5 244 68.4
C01p51620 Brassica napus HOM05D006345 ORTHO05D007428 1.1e-88 330.5 244 68.4
BolC1t05105H Brassica oleracea HOM05D006345 ORTHO05D007428 1.1e-88 330.5 244 68.4
SGA_v2.0_scaffold8G04616 Striga asiatica HOM05D006345 ORTHO05D007428 1.5e-88 330.1 226 70.8
Thhalv10021414m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 3.3e-88 328.9 224 72.8
Carub.0006s3398 Capsella rubella HOM05D006345 ORTHO05D007428 5.7e-88 328.2 227 70.5
A01p40130 Brassica napus HOM05D006345 ORTHO05D007428 1.7e-87 326.6 244 67.6
Carub.0003s1288 Capsella rubella HOM05D006345 ORTHO05D007428 3.7e-87 325.5 225 72.4
Sp3g11640 Schrenkiella parvula HOM05D006345 ORTHO05D007428 4.8e-87 325.1 242 68.2
CARHR088090 Cardamine hirsuta HOM05D006345 ORTHO05D007428 6.3e-87 324.7 241 68.5
BraA01t04054Z Brassica rapa HOM05D006345 ORTHO05D007428 1.8e-86 323.2 244 66.8
BraA05t22416Z Brassica rapa HOM05D002140 ORTHO05D007428 2.4e-86 322.8 242 68.2
CDE04G1044 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 1.2e-85 320.5 251 64.5
A05p36090 Brassica napus HOM05D002140 ORTHO05D007428 2.6e-85 319.3 242 67.4
BcaB04g21015 Brassica carinata HOM05D006345 ORTHO05D007428 3.5e-85 318.9 245 67.3
BcaC05g29179 Brassica carinata HOM05D002140 ORTHO05D007428 5.9e-85 318.2 242 66.5
C05p54470 Brassica napus HOM05D002140 ORTHO05D007428 5.9e-85 318.2 242 66.5
BolC5t34114H Brassica oleracea HOM05D002140 ORTHO05D007428 5.9e-85 318.2 242 66.5
CDE06G0136 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 1.7e-84 316.6 211 70.1
HPP92_018755 Vanilla planifolia HOM05D006345 ORTHO05D007428 1.1e-83 313.9 255 63.1
ATR0561G247 Amborella trichopoda HOM05D006345 ORTHO05D007428 2.1e-82 309.7 250 62.0
Lsat_1_v5_gn_2_63801 Lactuca sativa HOM05D006345 ORTHO05D007428 6.7e-81 304.7 248 60.1
SHI16738 Sapria himalayana HOM05D006345 ORTHO05D007428 6.7e-81 304.7 209 71.8
Os03g0824200 Oryza sativa ssp. japonica HOM05D006345 ORTHO05D007428 5.7e-80 301.6 239 62.8
Solyc12g100070.3 Solanum lycopersicum HOM05D006345 ORTHO05D007428 1.2e-77 293.9 188 74.5
Zm00001eb211470 Zea mays HOM05D006345 ORTHO05D007428 2.0e-77 293.1 210 67.1
Mapoly0069s0066 Marchantia polymorpha HOM05D006345 ORTHO05D007428 5.9e-77 291.6 245 58.8
Pp3c9_17440 Physcomitrium patens HOM05D006345 ORTHO05D007428 5.9e-77 291.6 245 59.2
AagrBONN_evm.TU.Sc2ySwM_117.4015 Anthoceros agrestis HOM05D006345 ORTHO05D007428 2.0e-72 276.6 210 61.4
SMO358G0200 Selaginella moellendorffii HOM05D006345 ORTHO05D007428 2.6e-72 276.2 210 62.4
CBR_g45447 Chara braunii HOM05D006345 ORTHO05D007428 3.4e-72 275.8 220 60.0
AUR62002307 Chenopodium quinoa HOM05D006345 ORTHO05D007428 5.7e-72 275.0 258 57.0
Thhalv10009961m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 2.2e-71 273.1 223 61.9
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 1.7e-63 246.9 186 65.6
SEGI_21458 Sequoiadendron giganteum HOM05D006345 ORTHO05D007428 1.8e-57 226.9 162 69.1
CSS0000171 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 3.0e-52 209.5 138 76.1
CAN.G1126.44 Capsicum annuum HOM05D006345 ORTHO05D007428 9.2e-46 188.0 175 56.0
Cre01.g036750 Chlamydomonas reinhardtii HOM05D006345 ORTHO05D007428 3.5e-45 186.0 212 46.2
Zm00001eb141630 Zea mays HOM05D006345 ORTHO05D007428 1.9e-43 180.3 144 62.5
Potri.003G157201 Populus trichocarpa HOM05D006345 ORTHO05D007428 2.5e-35 153.3 104 71.2
MCO02G297 Micromonas commoda HOM05D006345 ORTHO05D007428 2.6e-32 143.3 170 43.5
Sabra03G0114100 Salix brachista HOM05D000029 ORTHO05D000854 9.9e-32 141.4 239 38.1
Zm00001eb356470 Zea mays HOM05D006345 ORTHO05D007428 3.9e-28 129.4 100 65.0
ATR0006G036 Amborella trichopoda HOM05D006345 ORTHO05D007428 1.1e-11 74.7 50 68.0
Lj1P1152T38 Lonicera japonica HOM05D006345 ORTHO05D007428 1.6e-10 70.9 52 63.5
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 1.5e-08 64.3 158 29.7
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 4.5e-08 62.8 143 31.5
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 9.9e-08 61.6 139 31.7
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 9.9e-08 61.6 137 32.1
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 1.7e-07 60.8 105 37.1
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 2.2e-07 60.5 143 30.8
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 2.9e-07 60.1 133 31.6
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 3.8e-07 59.7 149 32.9
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 4.9e-07 59.3 170 28.2
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 4.9e-07 59.3 139 30.9
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 8.4e-07 58.5 143 30.1
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 1.1e-06 58.2 105 36.2
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 1.1e-06 58.2 143 29.4
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 1.4e-06 57.8 143 29.4
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 1.4e-06 57.8 153 30.1
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 1.4e-06 57.8 143 30.8
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 1.9e-06 57.4 139 29.5
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 1.9e-06 57.4 139 28.8
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 1.9e-06 57.4 139 30.2
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 2.4e-06 57.0 139 29.5
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 3.2e-06 56.6 141 30.5
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 3.2e-06 56.6 141 30.5
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 3.2e-06 56.6 148 29.7
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 4.2e-06 56.2 141 30.5
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 4.2e-06 56.2 105 35.2
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 5.5e-06 55.8 175 28.0
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 5.5e-06 55.8 181 28.2
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 9.3e-06 55.1 152 32.2
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 9.3e-06 55.1 139 28.8
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 9.3e-06 55.1 140 29.3


User provided reference genes

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