Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0021691 Rosa chinensis HOM05D002037 ORTHO05D005586 1.9e-37 158.7 80 100.0
RcHm_v2.0_Chr6g0312541 Rosa chinensis HOM05D002037 ORTHO05D005586 2.0e-31 138.7 77 90.9
RcHm_v2.0_Chr3g0471221 Rosa chinensis HOM05D002037 ORTHO05D005586 5.9e-31 137.1 80 87.5
FAN27G1718 Fragaria x ananassa HOM05D002037 ORTHO05D005586 1.7e-30 135.6 77 89.6
RcHm_v2.0_Chr7g0238931 Rosa chinensis HOM05D002037 ORTHO05D005586 8.5e-30 133.3 80 83.8
FvH4_2g30500 Fragaria vesca HOM05D002037 ORTHO05D005586 3.2e-29 131.3 77 87.0
FAN24G2569 Fragaria x ananassa HOM05D002037 ORTHO05D005586 3.2e-29 131.3 77 87.0
RcHm_v2.0_Chr6g0292021 Rosa chinensis HOM05D002037 ORTHO05D005586 3.2e-29 131.3 79 86.1
FAN20G1771 Fragaria x ananassa HOM05D002037 ORTHO05D005586 9.4e-29 129.8 76 86.8
Prupe.1G463900 Prunus persica HOM05D002037 ORTHO05D005586 8.8e-27 123.2 77 80.5
CANSAT25G2792 Cannabis sativa HOM05D002037 ORTHO05D005586 3.3e-26 121.3 77 80.5
MD08G1134500 Malus domestica HOM05D002037 ORTHO05D005586 6.9e-24 113.6 77 72.7
ClCG08G012830 Citrullus lanatus HOM05D002037 ORTHO05D005586 3.4e-23 111.3 77 68.8
MELO3C011208.2 Cucumis melo HOM05D002037 ORTHO05D005586 3.4e-23 111.3 77 68.8
Sed0016385 Sechium edule HOM05D002037 ORTHO05D005586 3.4e-23 111.3 77 68.8
CiPaw.07G216400 Carya illinoinensis HOM05D002037 ORTHO05D005586 4.5e-23 110.9 77 68.8
Sed0022277 Sechium edule HOM05D002037 ORTHO05D005586 1.0e-22 109.8 77 67.5
CsaV3_2G031570 Cucumis sativus L. HOM05D002037 ORTHO05D005586 1.7e-22 109.0 77 67.5
Potri.018G001600 Populus trichocarpa HOM05D002037 ORTHO05D005586 2.2e-22 108.6 77 71.4
MSTRG.2681 Avicennia marina HOM05D002037 ORTHO05D005586 3.8e-22 107.8 77 66.2
Haze_05098 Corylus avellana HOM05D002037 ORTHO05D005586 3.8e-22 107.8 77 66.2
Duzib177G0635 Durio zibethinus HOM05D002037 ORTHO05D005586 3.8e-22 107.8 77 68.8
Migut.F01615 Erythranthe guttata HOM05D002037 ORTHO05D005586 3.8e-22 107.8 77 66.2
GSVIVG01035586001 Vitis vinifera HOM05D002037 ORTHO05D005586 3.8e-22 107.8 77 68.8
Eucgr.C02143 Eucalyptus grandis HOM05D002037 ORTHO05D005586 5.0e-22 107.5 77 70.1
THA.LOC104802261 Tarenaya hassleriana HOM05D002037 ORTHO05D005586 6.5e-22 107.1 77 68.8
Carub.0005s2440 Capsella rubella HOM05D002037 ORTHO05D005586 8.5e-22 106.7 77 68.8
Cfa013231 Carpinus fangiana HOM05D002037 ORTHO05D005586 8.5e-22 106.7 77 64.9
Ciclev10008739m.g Citrus clementina HOM05D002037 ORTHO05D005586 8.5e-22 106.7 77 67.5
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 8.5e-22 106.7 77 68.8
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 1.1e-21 106.3 77 67.5
Oeu019002.1 Olea europaea HOM05D002037 ORTHO05D005586 1.1e-21 106.3 77 66.2
Thecc.08G172900 Theobroma cacao HOM05D002037 ORTHO05D005586 1.1e-21 106.3 77 68.8
Aa31sc1187G30 Aethionema arabicum HOM05D002037 ORTHO05D005586 1.4e-21 105.9 77 68.8
Aa31sc992G40 Aethionema arabicum HOM05D002037 ORTHO05D005586 1.4e-21 105.9 77 68.8
AL5G39140 Arabidopsis lyrata HOM05D002037 ORTHO05D005586 1.4e-21 105.9 77 68.8
AT3G57560 Arabidopsis thaliana HOM05D002037 ORTHO05D005586 1.4e-21 105.9 77 68.8
Peaxi162Scf00178g00004 Petunia axillaris HOM05D002037 ORTHO05D005586 1.4e-21 105.9 77 66.2
Glyma.06G074900 Glycine max HOM05D002037 ORTHO05D005586 1.9e-21 105.5 77 67.5
Lj8A3T12 Lonicera japonica HOM05D002037 ORTHO05D005586 1.9e-21 105.5 77 66.2
Atru.chr7.2707 Acer truncatum HOM05D002037 ORTHO05D005586 2.5e-21 105.1 77 66.2
Cc07_g17450 Coffea canephora HOM05D002037 ORTHO05D005586 2.5e-21 105.1 77 64.9
Glyma.04G073800 Glycine max HOM05D002037 ORTHO05D005586 2.5e-21 105.1 77 67.5
Phvul.009G099600 Phaseolus vulgaris HOM05D002037 ORTHO05D005586 2.5e-21 105.1 77 67.5
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 2.5e-21 105.1 77 67.5
BcaC07g40367 Brassica carinata HOM05D002037 ORTHO05D005586 3.2e-21 104.8 77 68.8
BcaC07g40389 Brassica carinata HOM05D002037 ORTHO05D005586 3.2e-21 104.8 77 68.8
A04p03050 Brassica napus HOM05D002037 ORTHO05D005586 3.2e-21 104.8 77 67.5
A09p50430 Brassica napus HOM05D002037 ORTHO05D005586 3.2e-21 104.8 77 68.8
C08p33110 Brassica napus HOM05D002037 ORTHO05D005586 3.2e-21 104.8 77 68.8
BolC8t50911H Brassica oleracea HOM05D002037 ORTHO05D005586 3.2e-21 104.8 77 68.8
BraA04t16028Z Brassica rapa HOM05D002037 ORTHO05D005586 3.2e-21 104.8 77 67.5
BraA09t40494Z Brassica rapa HOM05D002037 ORTHO05D005586 3.2e-21 104.8 77 68.8
CARHR167790 Cardamine hirsuta HOM05D002037 ORTHO05D005586 3.2e-21 104.8 77 67.5
Thhalv10006042m.g Eutrema salsugineum HOM05D002037 ORTHO05D005586 3.2e-21 104.8 77 68.8
Gohir.A13G118600 Gossypium hirsutum HOM05D002037 ORTHO05D005586 3.2e-21 104.8 77 67.5
Gohir.D13G122400 Gossypium hirsutum HOM05D002037 ORTHO05D005586 3.2e-21 104.8 77 67.5
Gorai.013G137200 Gossypium raimondii HOM05D002037 ORTHO05D005586 3.2e-21 104.8 77 67.5
Peaxi162Scf00896g00012 Petunia axillaris HOM05D002037 ORTHO05D005586 3.2e-21 104.8 77 64.9
QL12p030933 Quercus lobata HOM05D002037 ORTHO05D005586 3.2e-21 104.8 77 66.2
COL.COLO4_15466 Corchorus olitorius HOM05D002037 ORTHO05D005586 4.2e-21 104.4 77 67.5
Manes.10G056500 Manihot esculenta HOM05D002037 ORTHO05D005586 4.2e-21 104.4 77 67.5
Medtr3g108460 Medicago truncatula HOM05D002037 ORTHO05D005586 4.2e-21 104.4 77 67.5
Nitab4.5_0000320g0090 Nicotiana tabacum HOM05D002037 ORTHO05D005586 4.2e-21 104.4 77 64.9
Nitab4.5_0006112g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005586 4.2e-21 104.4 77 64.9
Sp5g05030 Schrenkiella parvula HOM05D002037 ORTHO05D005586 4.2e-21 104.4 77 67.5
BcaC02g09949 Brassica carinata HOM05D002037 ORTHO05D005586 5.5e-21 104.0 77 67.5
C04p34850 Brassica napus HOM05D002037 ORTHO05D005586 5.5e-21 104.0 77 67.5
BolC4t25037H Brassica oleracea HOM05D002037 ORTHO05D005586 5.5e-21 104.0 77 67.5
Dinv09453 Davidia involucrata HOM05D002037 ORTHO05D005586 5.5e-21 104.0 77 62.3
Manes.07G077700 Manihot esculenta HOM05D002037 ORTHO05D005586 5.5e-21 104.0 77 68.8
Solyc11g005620.1 Solanum lycopersicum HOM05D002037 ORTHO05D005586 5.5e-21 104.0 77 64.9
Sopen11g001580 Solanum pennellii HOM05D002037 ORTHO05D005586 5.5e-21 104.0 77 64.9
PGSC0003DMG400003981 Solanum tuberosum HOM05D002037 ORTHO05D005586 5.5e-21 104.0 77 64.9
Ah.05g177540 Amaranthus hybridus HOM05D002037 ORTHO05D005586 7.2e-21 103.6 77 64.9
Migut.H01099 Erythranthe guttata HOM05D002037 ORTHO05D005586 7.2e-21 103.6 77 63.6
Lalb_Chr23g0268941 Lupinus albus HOM05D002037 ORTHO05D005586 7.2e-21 103.6 77 67.5
HPP92_022465 Vanilla planifolia HOM05D002037 ORTHO05D005586 7.2e-21 103.6 77 68.8
Ah.05g177530 Amaranthus hybridus HOM05D002037 ORTHO05D005586 9.4e-21 103.2 77 64.9
MSTRG.23424 Avicennia marina HOM05D002037 ORTHO05D005586 9.4e-21 103.2 77 63.6
AUR62033316 Chenopodium quinoa HOM05D002037 ORTHO05D005586 9.4e-21 103.2 77 64.9
AUR62033343 Chenopodium quinoa HOM05D002037 ORTHO05D005586 9.4e-21 103.2 77 64.9
TAR636G3119 Trochodendron aralioides HOM05D002037 ORTHO05D005586 9.4e-21 103.2 77 66.2
CSS0019677 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005586 1.6e-20 102.4 77 63.6
HanXRQChr10g0278011 Helianthus annuus HOM05D002037 ORTHO05D005586 1.6e-20 102.4 77 61.0
Lj1g0005088 Lotus japonicus HOM05D002037 ORTHO05D005586 1.6e-20 102.4 77 64.9
Os04g0550500 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005586 1.6e-20 102.4 77 64.9
TWI14G0248 Tripterygium wilfordii HOM05D002037 ORTHO05D005586 1.6e-20 102.4 77 68.8
BcaB02g08309 Brassica carinata HOM05D002037 ORTHO05D005586 2.1e-20 102.1 77 66.2
Oeu048127.1 Olea europaea HOM05D002037 ORTHO05D005586 2.7e-20 101.7 77 62.3
Psat5g026120 Pisum sativum HOM05D002037 ORTHO05D005586 2.7e-20 101.7 77 64.9
Potri.006G280100 Populus trichocarpa HOM05D002037 ORTHO05D005586 2.7e-20 101.7 77 67.5
vmacro20743 Vaccinium macrocarpon HOM05D002037 ORTHO05D005586 2.7e-20 101.7 77 64.9
Haze_21661 Corylus avellana HOM05D002037 ORTHO05D005586 3.6e-20 101.3 77 63.6
Zm00001eb186530 Zea mays HOM05D002037 ORTHO05D005586 3.6e-20 101.3 77 63.6
CAN.G135.28 Capsicum annuum HOM05D002037 ORTHO05D005586 4.7e-20 100.9 77 64.9
Lsat_1_v5_gn_5_164581 Lactuca sativa HOM05D002037 ORTHO05D005586 4.7e-20 100.9 77 61.0
Cpa.g.sc6.178 Carica papaya HOM05D002037 ORTHO05D005586 6.1e-20 100.5 77 67.5
AUR62004328 Chenopodium quinoa HOM05D002037 ORTHO05D005586 6.1e-20 100.5 77 63.6
Rhsim07G0172400 Rhododendron simsii HOM05D002037 ORTHO05D005586 6.1e-20 100.5 77 64.9
Rhsim07G0173100 Rhododendron simsii HOM05D002037 ORTHO05D005586 6.1e-20 100.5 77 64.9
RhsimUnG0016600 Rhododendron simsii HOM05D002037 ORTHO05D005586 6.1e-20 100.5 77 64.9
Rhsim01G0105900 Rhododendron simsii HOM05D002037 ORTHO05D005586 1.0e-19 99.8 77 63.6
Zm00001eb074610 Zea mays HOM05D002037 ORTHO05D005586 1.0e-19 99.8 77 66.2
Os02g0657600 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005586 1.4e-19 99.4 77 61.0
Aqoxy5G02379 Aquilegia oxysepala HOM05D002037 ORTHO05D005586 2.3e-19 98.6 77 62.3
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 2.3e-19 98.6 77 61.0
Duzib116G0244 Durio zibethinus HOM05D002037 ORTHO05D005586 3.0e-19 98.2 79 64.6
PGR102G0041 Punica granatum HOM05D002037 ORTHO05D005586 3.0e-19 98.2 77 63.6
Hma1.2p1_1382F.1_g279370 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 3.9e-19 97.8 77 61.0
Nn1g00932 Nelumbo nucifera HOM05D002037 ORTHO05D005586 6.7e-19 97.1 77 62.3
Sc23g0004800 Simmondsia chinensis HOM05D002037 ORTHO05D005586 8.8e-19 96.7 77 62.3
unitig_8.g3509 Utricularia gibba HOM05D002037 ORTHO05D005586 1.1e-18 96.3 77 61.0
Thecc.03G146100 Theobroma cacao HOM05D002037 ORTHO05D005586 1.5e-18 95.9 74 66.2
ECA248G2210 Erigeron canadensis HOM05D002037 ORTHO05D005586 2.0e-18 95.5 77 59.7
SHI12423 Sapria himalayana HOM05D002037 ORTHO05D005586 2.0e-18 95.5 77 62.3
ECA234G1135 Erigeron canadensis HOM05D002037 ORTHO05D005586 2.6e-18 95.1 77 59.7
PSO063G5534 Papaver somniferum HOM05D002037 ORTHO05D005586 2.6e-18 95.1 77 62.3
SalBow6G1621 Salvia bowleyana HOM05D002037 ORTHO05D005586 2.6e-18 95.1 77 58.4
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 2.6e-18 95.1 77 58.4
DCAR_020609 Daucus carota HOM05D002037 ORTHO05D005586 1.7e-17 92.4 77 59.7
TPR.G12308 Trifolium pratense HOM05D002037 ORTHO05D005586 1.7e-17 92.4 77 59.7
Sc23g0004440 Simmondsia chinensis HOM05D002037 ORTHO05D005586 6.3e-17 90.5 77 59.7
SGA_v2.0_scaffold231G43409 Striga asiatica HOM05D002037 ORTHO05D005586 6.3e-17 90.5 77 58.4
AagrBONN_evm.TU.Sc2ySwM_344.3516 Anthoceros agrestis HOM05D002037 ORTHO05D005586 1.1e-16 89.7 77 62.3
SEGI_19958 Sequoiadendron giganteum HOM05D002037 ORTHO05D005586 1.4e-16 89.4 77 62.3
SEGI_35978 Sequoiadendron giganteum HOM05D002037 ORTHO05D005586 1.4e-16 89.4 77 62.3
Hund19379 Selenicereus undatus HOM05D002037 ORTHO05D005586 1.8e-16 89.0 77 58.4
Pp3c4_8600 Physcomitrium patens HOM05D002037 ORTHO05D005586 2.6e-15 85.1 77 54.5
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.3e-14 82.8 77 57.1
Sc23g0004780 Simmondsia chinensis HOM05D002037 ORTHO05D005586 1.3e-14 82.8 76 59.2
CBR_g84854 Chara braunii HOM05D002037 ORTHO05D005586 2.2e-14 82.0 77 54.5
ATR0782G017 Amborella trichopoda HOM05D002037 ORTHO05D005586 3.8e-14 81.3 77 58.4
Mapoly0031s0070 Marchantia polymorpha HOM05D002037 ORTHO05D005586 6.5e-14 80.5 77 54.5
Cre01.g015000 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005586 1.5e-13 79.3 77 53.2
Sc23g0004670 Simmondsia chinensis HOM05D002037 ORTHO05D005586 1.5e-13 79.3 76 56.6
MCO12G331 Micromonas commoda HOM05D002037 ORTHO05D005586 4.2e-13 77.8 77 51.9
SMO364G0053 Selaginella moellendorffii HOM05D002037 ORTHO05D005586 5.5e-13 77.4 77 54.5
CBR_g38963 Chara braunii HOM05D002037 ORTHO05D005586 1.6e-12 75.9 77 50.6
RcHm_v2.0_Chr6g0246551 Rosa chinensis HOM05D002037 ORTHO05D005586 1.0e-11 73.2 44 84.1
Actinidia14156 Actinidia chinensis HOM05D002037 ORTHO05D005586 4.4e-10 67.8 54 53.7
Haze_27393 Corylus avellana HOM05D002037 ORTHO05D005586 2.2e-09 65.5 87 44.8
Actinidia03569 Actinidia chinensis HOM05D002037 ORTHO05D005586 5.3e-08 60.8 45 64.4
PRCOL_00003640 Prasinoderma coloniale HOM05D002037 ORTHO05D005586 3.5e-07 58.2 78 41.0
SEGI_29454 Sequoiadendron giganteum HOM05D002037 ORTHO05D005586 8.5e-06 53.5 42 64.3


User provided reference genes

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