Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2727.2 1382 100.0
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2649.4 1383 97.4
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2597.8 1383 95.8
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2553.1 1399 93.9
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2523.4 1385 91.8
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2507.6 1383 91.6
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2473.0 1383 90.5
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2431.8 1388 88.3
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2427.5 1388 87.8
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2426.0 1387 88.0
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2414.8 1389 86.9
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2414.0 1389 86.8
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2409.4 1388 86.5
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2404.8 1388 86.9
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2404.4 1387 87.1
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2393.6 1388 86.4
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2388.2 1387 85.9
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2384.4 1389 86.1
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2384.0 1388 85.7
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2384.0 1388 85.7
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2382.8 1393 85.8
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2376.3 1386 85.3
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2374.4 1389 85.0
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2372.0 1388 85.4
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2366.3 1387 85.1
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2364.3 1390 85.0
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2362.4 1386 85.0
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2358.9 1388 85.0
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2352.0 1388 84.1
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2350.5 1399 84.1
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2348.2 1432 83.7
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2346.2 1388 83.7
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2341.6 1392 84.5
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2341.6 1388 83.6
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2332.8 1481 80.2
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2329.7 1391 83.8
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2327.7 1387 84.3
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2327.0 1390 83.2
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2315.8 1387 83.1
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2312.7 1346 86.0
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2304.6 1388 83.0
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2301.6 1387 82.8
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2292.7 1387 83.6
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2289.2 1385 82.9
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2281.1 1389 82.7
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2275.7 1387 81.8
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2272.7 1387 81.8
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2269.6 1484 78.3
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2268.0 1384 82.1
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2262.6 1385 82.1
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2255.3 1380 82.2
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2254.6 1391 81.7
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2253.0 1386 81.5
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2252.6 1407 80.6
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2251.9 1424 80.9
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2248.8 1406 80.8
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2247.6 1398 80.8
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2245.3 1385 81.7
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2243.0 1405 80.9
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2242.6 1395 80.1
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2242.2 1416 79.5
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2235.7 1399 80.0
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2233.4 1402 80.1
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2228.8 1383 80.9
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2224.5 1401 80.3
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2223.0 1402 80.3
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2221.8 1402 80.1
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2219.9 1402 80.1
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2216.8 1402 79.8
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2208.7 1395 79.9
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2195.2 1412 79.2
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2186.0 1368 80.8
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2170.6 1387 78.9
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2167.5 1413 79.1
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2166.0 1253 86.7
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2118.2 1223 85.8
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2107.8 1697 66.6
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 2049.2 1302 79.6
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 2025.8 1347 76.2
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 2014.2 1344 75.8
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 2013.0 1349 75.6
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1958.7 1443 70.8
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1943.3 1375 73.7
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1939.9 1332 73.5
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1928.3 1380 70.7
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1926.4 1188 81.1
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1892.9 1386 69.3
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1884.8 1380 69.3
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1783.8 1529 62.9
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1493.8 928 79.8
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1484.5 1157 64.9
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1446.8 821 87.6
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1419.8 1384 53.0
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1406.3 974 74.1
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1371.7 1357 51.5
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1359.0 1366 50.4
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1348.2 715 95.7
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1342.4 1337 51.6
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1240.7 761 82.1
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1216.1 815 76.0
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1204.5 879 68.3
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1170.6 791 75.6
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 3.3e-299 1032.3 588 86.6
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 6.3e-282 974.9 816 58.5
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.2e-259 901.0 598 76.6
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 5.1e-223 779.2 516 78.5
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 3.5e-216 756.5 484 80.0
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 3.9e-199 699.9 541 66.2
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 1.9e-190 671.0 1480 30.8
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 9.7e-166 589.0 538 59.5
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.8e-151 541.6 366 74.3
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 3.0e-138 497.7 527 51.6
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 1.2e-128 465.7 539 53.6
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.7e-106 392.1 269 72.9
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 2.1e-96 358.6 215 80.5
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 6.7e-90 337.0 421 49.2
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.7e-85 322.4 192 79.7
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 2.8e-72 278.5 299 52.5
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 3.8e-61 241.5 145 80.0
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 1.1e-55 223.4 133 82.0
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 7.2e-44 184.1 128 67.2
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.5e-41 176.4 133 72.2
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.2e-35 156.8 158 51.9
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 1.8e-34 152.9 116 69.8
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 8.9e-34 150.6 94 81.9
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 1.2e-33 150.2 89 76.4
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 2.4e-31 142.5 112 65.2
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 4.1e-31 141.7 84 84.5
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 1.6e-30 139.8 83 75.9
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 1.5e-28 133.3 107 62.6
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 3.6e-27 128.6 101 66.3
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 4.0e-26 125.2 154 50.6
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 8.9e-26 124.0 86 73.3
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 2.6e-25 122.5 239 37.7
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 6.4e-24 117.9 98 58.2
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 9.2e-23 114.0 166 41.6
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.7e-21 109.8 119 54.6
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.1e-20 107.1 124 49.2
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 3.6e-19 102.1 89 57.3
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 2.0e-17 96.3 65 78.5
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 6.4e-16 91.3 106 51.9
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 4.1e-15 88.6 50 88.0
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 2.7e-14 85.9 54 77.8
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 8.6e-13 80.9 100 47.0
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 3.3e-12 79.0 45 84.4
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 2.1e-11 76.3 50 72.0
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 2.1e-11 76.3 50 72.0
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 2.8e-11 75.9 42 88.1
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 8.3e-08 64.3 62 58.1
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-07 63.9 35 88.6
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-07 63.9 35 88.6
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-07 63.9 35 88.6
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-07 63.9 35 88.6
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 7.1e-07 61.2 54 55.6
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 1.6e-06 60.1 34 85.3


User provided reference genes

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