Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0019891 Rosa chinensis HOM05D006750 ORTHO05D008426 4.2e-92 341.3 163 100.0
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 2.3e-82 308.9 167 89.2
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 6.7e-82 307.4 166 89.8
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 1.5e-81 306.2 166 89.2
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 3.8e-69 265.0 171 77.2
MD10G1234600 Malus domestica HOM05D006750 ORTHO05D008426 6.5e-69 264.2 171 75.4
MD05G1254400 Malus domestica HOM05D006750 ORTHO05D008426 2.5e-68 262.3 171 73.1
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 2.7e-59 232.3 157 68.8
Potri.012G120100 Populus trichocarpa HOM05D006750 ORTHO05D008426 1.8e-58 229.6 157 68.2
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 3.0e-58 228.8 161 64.0
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 5.1e-58 228.0 158 64.6
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 3.3e-57 225.3 170 64.1
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 2.8e-56 222.2 160 63.8
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 4.8e-56 221.5 155 65.8
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 2.4e-55 219.2 160 63.1
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 3.1e-55 218.8 149 67.1
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 4.1e-55 218.4 147 66.0
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 2.0e-54 216.1 164 62.2
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 5.9e-54 214.5 146 65.8
Haze_06024 Corylus avellana HOM05D006750 ORTHO05D008426 7.7e-54 214.2 141 70.9
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 7.7e-54 214.2 157 65.0
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 1.3e-53 213.4 137 70.1
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 2.2e-53 212.6 141 70.2
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 8.5e-53 210.7 159 62.9
Eucgr.D01041 Eucalyptus grandis HOM05D006750 ORTHO05D008426 1.1e-52 210.3 152 63.2
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 1.5e-52 209.9 158 60.8
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 1.9e-52 209.5 152 64.5
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 7.2e-52 207.6 139 66.9
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 9.4e-52 207.2 158 60.1
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 1.2e-51 206.8 170 60.0
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 1.6e-51 206.5 157 61.8
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 2.1e-51 206.1 158 60.1
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 2.7e-51 205.7 153 63.4
Sed0026407 Sechium edule HOM05D006750 ORTHO05D008426 1.8e-50 203.0 145 64.8
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 3.0e-50 202.2 153 59.5
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 3.0e-50 202.2 147 62.6
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 5.2e-50 201.4 138 65.9
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 1.1e-49 200.3 139 66.2
Nn7g38126 Nelumbo nucifera HOM05D006750 ORTHO05D008426 2.6e-49 199.1 159 57.9
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 3.3e-49 198.7 166 60.2
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 1.4e-47 193.4 145 60.7
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 1.4e-47 193.4 144 59.7
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 3.1e-47 192.2 147 61.2
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 9.1e-47 190.7 142 59.2
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 9.1e-47 190.7 154 58.4
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 2.0e-46 189.5 137 62.0
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 4.5e-46 188.3 157 55.4
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 1.3e-45 186.8 157 59.2
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 1.7e-45 186.4 148 58.1
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 5.0e-45 184.9 128 64.8
CARHR134300 Cardamine hirsuta HOM05D006750 ORTHO05D008426 6.5e-45 184.5 155 56.8
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 8.5e-45 184.1 156 58.3
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 1.1e-44 183.7 160 56.2
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 1.5e-44 183.3 155 56.1
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 1.9e-44 183.0 153 56.2
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 1.9e-44 183.0 147 57.8
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 1.9e-44 183.0 158 55.7
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 2.5e-44 182.6 154 57.1
Carub.0004s2150 Capsella rubella HOM05D006750 ORTHO05D008426 4.2e-44 181.8 155 54.2
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 1.2e-43 180.3 155 54.8
MSTRG.22268 Avicennia marina HOM05D006750 ORTHO05D008426 2.7e-43 179.1 146 56.8
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 4.7e-43 178.3 157 52.2
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 6.1e-43 177.9 161 55.9
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 1.0e-42 177.2 158 55.7
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 4.0e-42 175.3 159 53.5
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 5.2e-42 174.9 114 70.2
Migut.M01971 Erythranthe guttata HOM05D006750 ORTHO05D008426 5.2e-42 174.9 162 51.9
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 6.8e-42 174.5 156 52.6
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 6.8e-42 174.5 155 53.5
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 8.8e-42 174.1 156 53.2
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 8.8e-42 174.1 156 52.6
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 1.2e-41 173.7 156 52.6
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 1.2e-41 173.7 156 52.6
Psat0s3953g0080 Pisum sativum HOM05D006750 ORTHO05D008426 3.4e-41 172.2 155 53.5
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 5.7e-41 171.4 156 51.9
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 7.5e-41 171.0 151 53.6
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 9.7e-41 170.6 151 55.0
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 2.2e-40 169.5 156 51.9
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 4.8e-40 168.3 154 53.2
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 1.4e-39 166.8 157 49.0
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 1.8e-39 166.4 140 55.0
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 1.8e-39 166.4 140 55.0
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 1.8e-39 166.4 151 53.0
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 4.1e-39 165.2 138 58.7
PSO675G8070 Papaver somniferum HOM05D006750 ORTHO05D008426 5.3e-39 164.9 154 50.0
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 5.3e-39 164.9 161 50.3
PSO541G1844 Papaver somniferum HOM05D006750 ORTHO05D008426 7.0e-39 164.5 154 50.0
AUR62018626 Chenopodium quinoa HOM05D006750 ORTHO05D008426 1.2e-38 163.7 161 54.0
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 1.2e-38 163.7 131 55.7
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 3.2e-36 155.6 159 45.9
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 3.2e-36 155.6 159 45.9
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 1.6e-35 153.3 163 50.3
CDE06G2778 Ceratophyllum demersum HOM05D006750 ORTHO05D008426 8.0e-35 151.0 123 52.8
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 1.8e-34 149.8 144 52.8
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 2.3e-34 149.4 110 60.9
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 4.0e-34 148.7 132 57.6
Lalb_Chr02g0152091 Lupinus albus HOM05D006750 ORTHO05D008426 6.8e-34 147.9 157 47.1
Peaxi162Scf00149g00921 Petunia axillaris HOM05D006750 ORTHO05D008426 7.0e-31 137.9 154 48.1
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 6.6e-29 131.3 116 51.7
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 1.5e-28 130.2 139 46.8
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 9.5e-28 127.5 93 63.4
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 6.1e-27 124.8 146 43.2
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 3.0e-26 122.5 147 40.1
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 7.5e-25 117.9 213 34.3
SMO367G1186 Selaginella moellendorffii HOM05D006750 ORTHO05D008426 1.7e-24 116.7 128 39.8
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 2.8e-24 115.9 158 38.0
CARHR087370 Cardamine hirsuta HOM05D006750 ORTHO05D008426 5.9e-22 108.2 84 59.5
Hund11170 Selenicereus undatus HOM05D006750 ORTHO05D008426 1.5e-20 103.6 77 59.7
Cpa.g.sc135.32 Carica papaya HOM05D006750 ORTHO05D008426 1.2e-17 94.0 70 58.6
Zm00001eb233030 Zea mays HOM05D006750 ORTHO05D008426 1.7e-16 90.1 145 37.9
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 9.2e-15 84.3 104 39.4
TPR.G24917 Trifolium pratense HOM05D006750 ORTHO05D008426 3.5e-14 82.4 80 50.0
Sopen02g018170 Solanum pennellii HOM05D006750 ORTHO05D008426 3.0e-13 79.3 67 55.2
Hund11169 Selenicereus undatus HOM05D006750 ORTHO05D008426 1.5e-12 77.0 94 47.9
Zm00001eb233050 Zea mays HOM05D006750 ORTHO05D008426 5.6e-12 75.1 143 35.7
PRCOL_00005799 Prasinoderma coloniale HOM05D006750 ORTHO05D008426 2.2e-08 63.2 125 30.4
MBI18_g36125_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 3.2e-07 59.3 48 50.0
Cfa010446 Carpinus fangiana HOM05D006750 ORTHO05D008426 1.2e-06 57.4 45 60.0


User provided reference genes

Program Settings