Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 8.1e-35 149.8 74 100.0
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 1.0e-29 132.9 76 90.8
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 8.1e-27 123.2 67 95.5
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 3.8e-24 114.4 74 85.1
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 1.9e-23 112.1 74 81.1
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 5.4e-23 110.5 74 81.1
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 2.7e-22 108.2 76 72.4
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 6.0e-22 107.1 76 75.0
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 2.3e-21 105.1 76 73.7
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 1.9e-20 102.1 74 74.3
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 9.6e-20 99.8 74 68.9
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 4.8e-19 97.4 79 67.1
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 6.2e-19 97.1 74 63.5
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 1.4e-18 95.9 73 63.0
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 1.8e-18 95.5 74 68.9
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 1.8e-18 95.5 74 64.9
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 2.4e-18 95.1 76 64.5
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 3.1e-18 94.7 74 64.9
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 9.0e-18 93.2 72 66.7
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 9.0e-18 93.2 78 64.1
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 1.2e-17 92.8 74 62.2
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 1.5e-17 92.4 74 66.2
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 1.5e-17 92.4 74 66.2
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 2.0e-17 92.0 74 64.9
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 2.0e-17 92.0 74 62.2
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 2.0e-17 92.0 72 63.9
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 2.0e-17 92.0 74 63.5
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 2.0e-17 92.0 74 66.2
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 2.6e-17 91.7 74 64.9
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 4.5e-17 90.9 74 67.6
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 4.5e-17 90.9 74 64.9
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 4.5e-17 90.9 78 64.1
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 5.8e-17 90.5 74 60.8
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 5.8e-17 90.5 74 66.2
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 5.8e-17 90.5 74 67.6
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 9.9e-17 89.7 74 63.5
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 9.9e-17 89.7 74 66.2
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 9.9e-17 89.7 74 66.2
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 9.9e-17 89.7 74 66.2
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 9.9e-17 89.7 74 63.5
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 9.9e-17 89.7 76 64.5
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 9.9e-17 89.7 71 69.0
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 1.3e-16 89.4 74 66.2
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 1.3e-16 89.4 74 66.2
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 1.3e-16 89.4 77 64.9
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 1.7e-16 89.0 74 62.2
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 2.2e-16 88.6 74 60.8
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 3.8e-16 87.8 63 65.1
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 4.9e-16 87.4 74 63.5
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 6.4e-16 87.0 63 68.3
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 6.4e-16 87.0 74 60.8
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 8.4e-16 86.7 72 59.7
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.1e-15 86.3 63 68.3
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 1.9e-15 85.5 67 65.7
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 2.4e-15 85.1 71 60.6
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 3.2e-15 84.7 52 76.9
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 3.2e-15 84.7 63 66.7
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 3.2e-15 84.7 74 59.5
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 4.2e-15 84.3 70 62.9
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 4.2e-15 84.3 81 58.0
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 5.4e-15 84.0 74 63.5
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 3.5e-14 81.3 76 59.2
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 1.8e-13 79.0 72 56.9
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 2.3e-13 78.6 62 62.9
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 3.0e-13 78.2 74 56.8
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 6.7e-13 77.0 46 76.1
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 3.3e-12 74.7 70 55.7
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 1.3e-11 72.8 74 54.1
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 2.8e-11 71.6 66 57.6
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 1.4e-10 69.3 76 52.6
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 1.8e-10 68.9 64 53.1
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 2.4e-10 68.6 74 50.0
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 5.3e-10 67.4 78 48.7
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 5.3e-10 67.4 78 48.7
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 6.9e-10 67.0 58 58.6
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 6.9e-10 67.0 49 69.4
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 2.0e-09 65.5 66 54.5
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 2.6e-09 65.1 40 65.0
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 3.4e-09 64.7 74 50.0
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 4.5e-09 64.3 51 60.8
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 3.8e-08 61.2 64 51.6
Lsat_1_v5_gn_2_106500 Lactuca sativa HOM05D007947 ORTHO05D010018 1.4e-07 59.3 55 56.4
HanXRQChr14g0454561 Helianthus annuus HOM05D009309 ORTHO05D011491 5.5e-07 57.4 54 53.7
Migut.J00541 Erythranthe guttata HOM05D009309 ORTHO05D011491 7.1e-07 57.0 66 51.5
Lj1g0009603 Lotus japonicus HOM05D009309 ORTHO05D011491 9.3e-07 56.6 50 58.0
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 1.6e-06 55.8 50 56.0
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 2.7e-06 55.1 50 56.0
Manes.08G008300 Manihot esculenta HOM05D009309 ORTHO05D011491 2.7e-06 55.1 56 48.2
Nn2g11514 Nelumbo nucifera HOM05D009309 ORTHO05D011491 2.7e-06 55.1 45 62.2
Rhsim05G0179800 Rhododendron simsii HOM05D009309 ORTHO05D011491 3.5e-06 54.7 52 48.1
Aqoxy1G01207 Aquilegia oxysepala HOM05D009309 ORTHO05D011491 4.6e-06 54.3 59 50.8
Nn7g37890 Nelumbo nucifera HOM05D021221 ORTHO05D025179 4.6e-06 54.3 93 40.9
Dinv37295 Davidia involucrata HOM05D009309 ORTHO05D011491 6.0e-06 53.9 61 50.8


User provided reference genes

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