Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 3.6e-140 501.5 244 100.0
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.1e-133 479.9 244 95.1
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 1.5e-133 479.6 244 95.1
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 7.3e-133 477.2 244 95.1
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 8.1e-132 473.8 244 94.7
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 3.1e-123 445.3 244 85.2
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 2.0e-122 442.6 242 87.2
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.9e-109 399.4 245 78.8
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 4.3e-109 398.3 245 78.8
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 3.1e-107 392.1 248 75.8
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 1.5e-106 389.8 251 73.7
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 2.9e-105 385.6 244 76.2
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 4.9e-105 384.8 246 76.4
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 6.4e-105 384.4 250 74.0
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 1.4e-104 383.3 245 74.3
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 1.9e-104 382.9 244 75.0
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 4.2e-104 381.7 241 75.1
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 5.4e-104 381.3 250 72.4
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 7.1e-104 380.9 245 73.5
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 2.1e-103 379.4 244 74.6
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 2.7e-103 379.0 250 72.4
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 2.7e-103 379.0 250 72.4
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 6.0e-103 377.9 251 72.5
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 1.0e-102 377.1 240 75.4
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.0e-102 377.1 248 73.4
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 3.0e-102 375.6 249 72.3
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 3.0e-102 375.6 250 71.6
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 1.5e-101 373.2 244 73.4
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 1.9e-101 372.9 248 72.2
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 3.3e-101 372.1 250 72.4
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 7.4e-101 370.9 245 73.1
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 4.8e-100 368.2 249 72.3
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 4.8e-100 368.2 245 73.1
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 3.1e-99 365.5 246 71.1
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 1.2e-98 363.6 206 84.0
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.0e-98 362.8 246 70.3
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 7.6e-98 360.9 250 69.2
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 1.3e-97 360.1 251 68.9
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 1.9e-96 356.3 247 68.8
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 4.2e-96 355.1 245 70.2
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 3.5e-95 352.1 239 69.0
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 4.6e-95 351.7 246 67.9
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 6.0e-95 351.3 246 69.9
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 7.9e-95 350.9 238 68.5
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 1.0e-94 350.5 282 63.5
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 1.1e-93 347.1 244 69.7
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 2.5e-93 345.9 240 66.7
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 3.3e-93 345.5 240 67.1
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 4.3e-93 345.1 242 68.6
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 9.6e-93 344.0 243 66.3
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 1.6e-92 343.2 244 69.3
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 2.1e-92 342.8 244 69.7
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 4.8e-92 341.7 245 66.9
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.1e-91 340.5 246 66.7
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.8e-91 339.7 244 68.9
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 3.1e-91 339.0 240 67.1
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 3.1e-91 339.0 206 79.6
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 1.2e-90 337.0 237 67.5
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 2.0e-90 336.3 239 67.8
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 2.6e-90 335.9 237 65.8
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 3.4e-90 335.5 243 66.3
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 3.4e-90 335.5 242 65.7
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 5.8e-90 334.7 244 64.3
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 7.6e-90 334.3 237 66.2
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 1.3e-89 333.6 243 65.4
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 1.3e-89 333.6 242 66.5
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 3.8e-89 332.0 237 66.2
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 3.8e-89 332.0 237 66.2
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 8.4e-89 330.9 243 65.0
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 1.9e-88 329.7 237 65.0
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 5.5e-88 328.2 237 65.4
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 5.5e-88 328.2 190 86.3
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 9.3e-88 327.4 244 64.3
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 9.3e-88 327.4 237 65.4
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.6e-87 326.6 237 65.4
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 2.7e-87 325.9 245 64.5
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 4.6e-87 325.1 246 65.4
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 4.6e-87 325.1 274 60.2
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 6.0e-87 324.7 223 69.1
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 6.0e-87 324.7 250 63.2
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 6.0e-87 324.7 239 65.3
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 3.0e-86 322.4 218 68.8
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 1.5e-85 320.1 200 75.5
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 3.3e-85 318.9 237 65.0
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 7.4e-85 317.8 237 64.6
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 9.7e-85 317.4 242 67.4
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 1.3e-84 317.0 205 73.2
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 2.8e-84 315.8 244 61.9
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.0e-81 307.4 216 71.3
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 3.8e-81 305.4 240 62.5
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 4.6e-79 298.5 204 71.6
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 1.4e-78 297.0 182 77.5
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 1.8e-78 296.6 246 61.0
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 2.3e-78 296.2 196 70.9
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 5.7e-77 291.6 210 64.8
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 5.7e-77 291.6 210 65.7
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 1.7e-76 290.0 269 57.2
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 4.8e-76 288.5 238 60.1
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 3.1e-75 285.8 211 64.9
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 1.2e-74 283.9 211 64.9
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.2e-74 283.9 192 68.8
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 3.4e-74 282.3 211 64.5
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 4.5e-74 282.0 211 64.5
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.9e-72 276.6 193 67.9
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 2.7e-71 272.7 238 56.3
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 7.9e-71 271.2 241 51.9
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.0e-70 269.2 239 53.6
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 5.1e-70 268.5 239 51.9
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 6.7e-70 268.1 243 51.4
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 2.6e-69 266.2 188 67.6
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 1.3e-65 253.8 232 57.8
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 2.2e-65 253.1 166 68.7
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 7.2e-64 248.1 239 47.7
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 9.4e-64 247.7 201 64.2
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 6.1e-63 245.0 183 62.8
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 9.7e-61 237.7 200 55.0
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 2.2e-60 236.5 242 52.1
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 2.4e-59 233.0 164 65.2
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 5.3e-59 231.9 144 77.1
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.0e-57 227.6 196 59.7
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 6.5e-57 224.9 237 55.3
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 4.2e-56 222.2 173 61.8
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 5.5e-56 221.9 218 50.5
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.2e-55 220.7 218 50.0
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 3.3e-53 212.6 166 65.1
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 1.3e-52 210.7 214 48.1
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 5.0e-49 198.7 226 49.1
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 1.9e-48 196.8 131 74.0
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 3.2e-48 196.1 172 57.6
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.2e-47 194.1 194 49.5
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 7.5e-45 184.9 114 78.1
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.3e-44 184.1 190 51.1
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 3.7e-44 182.6 231 46.8
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 3.3e-40 169.5 192 47.9
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 1.6e-39 167.2 110 74.5
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 2.3e-38 163.3 105 72.4
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 2.3e-38 163.3 223 40.4
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 4.9e-36 155.6 108 67.6
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.4e-35 154.1 106 67.0
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 7.8e-34 148.3 161 53.4
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 3.3e-32 142.9 215 43.7
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 8.0e-31 138.3 102 67.6
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 3.1e-22 109.8 99 53.5
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 4.4e-21 105.9 181 34.8
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.2e-20 103.6 72 69.4
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 2.7e-18 96.7 66 68.2
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 3.6e-15 86.3 65 63.1
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 8.1e-15 85.1 61 68.9
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 7.5e-13 78.6 81 50.6
FAN14G1154 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.4e-11 74.3 209 33.0
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 3.2e-11 73.2 72 51.4
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 2.1e-10 70.5 107 37.4
Migut.E01275 Erythranthe guttata HOM05D004805 ORTHO05D005756 8.9e-06 55.1 28 85.7


User provided reference genes

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