Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0018641 Rosa chinensis HOM05D007837 ORTHO05D009965 0.0e+00 1135.6 574 100.0
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 9.0e-291 1003.0 574 87.1
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.3e-284 982.6 557 88.0
FAN16G2143 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.2e-282 976.1 584 84.9
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.0e-278 963.0 558 86.2
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 2.3e-209 732.6 583 68.6
MD05G1261900 Malus domestica HOM05D007837 ORTHO05D009965 2.9e-196 689.1 590 64.2
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 6.0e-194 681.4 588 63.9
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 3.3e-184 649.0 583 60.4
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 2.0e-181 639.8 565 60.5
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 1.3e-180 637.1 587 58.4
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 2.2e-180 636.3 570 58.6
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 2.1e-178 629.8 578 59.2
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 2.3e-177 626.3 538 62.5
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 3.9e-177 625.5 584 58.2
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 1.1e-176 624.0 565 59.6
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 5.3e-174 615.1 538 61.2
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 1.5e-173 613.6 425 72.5
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 1.9e-171 606.7 560 58.0
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 2.4e-171 606.3 560 57.9
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 5.5e-171 605.1 559 57.2
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 3.0e-169 599.4 564 57.6
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 7.4e-168 594.7 588 55.6
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 2.8e-167 592.8 573 56.9
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 2.4e-166 589.7 576 55.9
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 2.6e-165 586.3 578 55.5
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 2.1e-162 576.6 594 55.4
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 5.5e-155 552.0 568 54.0
QL05p065337 Quercus lobata HOM05D007837 ORTHO05D009965 9.3e-155 551.2 585 53.0
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 1.9e-152 543.5 433 64.0
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 1.9e-152 543.5 580 53.8
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 2.8e-151 539.7 569 53.8
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 2.2e-148 530.0 582 50.9
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 8.5e-148 528.1 421 62.2
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 2.5e-147 526.6 549 54.6
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 2.1e-146 523.5 568 51.8
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 1.8e-145 520.4 571 51.3
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.8e-143 513.1 574 50.0
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.8e-143 513.1 574 50.0
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 3.1e-142 509.6 586 51.7
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 6.7e-137 491.9 643 45.9
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 1.4e-129 467.6 638 45.0
Nitab4.5_0011721g0030 Nicotiana tabacum HOM05D007837 ORTHO05D009965 4.0e-129 466.1 666 42.5
MBI18_g28215_MAGBIO Magnolia biondii HOM05D007837 ORTHO05D009965 5.2e-129 465.7 392 60.2
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 2.8e-127 459.9 413 56.2
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 3.1e-126 456.4 736 39.7
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 1.2e-125 454.5 729 39.6
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 3.8e-124 449.5 513 48.9
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 1.4e-118 431.0 441 54.0
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 2.4e-118 430.3 497 47.5
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 3.5e-117 426.4 440 53.6
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 5.0e-116 422.5 455 52.5
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 1.8e-113 414.1 436 53.7
arahy.Tifrunner.gnm1.ann1.SA9RL2 Arachis hypogaea HOM05D007837 ORTHO05D009965 2.9e-103 380.2 425 50.8
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 3.5e-101 373.2 348 56.0
Potri.001G443025 Populus trichocarpa HOM05D007837 ORTHO05D009965 2.5e-99 367.1 268 68.3
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 3.6e-98 363.2 291 60.5
Medtr4g035250 Medicago truncatula HOM05D007837 ORTHO05D009965 5.6e-91 339.3 428 45.1
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 1.4e-86 324.7 409 44.3
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 4.6e-85 319.7 481 41.2
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 7.1e-78 295.8 234 65.8
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 3.5e-69 266.9 406 38.9
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 5.4e-62 243.0 417 35.5
TPR.G1949 Trifolium pratense HOM05D007837 ORTHO05D009965 1.6e-53 214.9 187 58.8
Haze_05985 Corylus avellana HOM05D007837 ORTHO05D009965 1.5e-43 181.8 124 71.8
TAR633G0058 Trochodendron aralioides HOM05D007837 ORTHO05D009965 2.9e-39 167.5 197 47.7
TPR.G10794 Trifolium pratense HOM05D007837 ORTHO05D009965 5.0e-39 166.8 177 50.3
Hma1.2p1_0410F.1_g147010 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 2.3e-36 157.9 104 74.0
Sabra11G0145700 Salix brachista HOM05D007837 ORTHO05D009965 2.9e-31 141.0 113 60.2
GSVIVG01037970001 Vitis vinifera HOM05D007837 ORTHO05D009965 6.1e-29 133.3 102 64.7
Medtr4g035220 Medicago truncatula HOM05D007837 ORTHO05D009965 1.8e-28 131.7 142 50.7
Oeu008971.1 Olea europaea HOM05D007837 ORTHO05D009965 5.0e-23 113.6 106 54.7
Glyma.03G069100 Glycine max HOM05D007837 ORTHO05D009965 3.2e-22 110.9 192 37.5
Hma1.2p1_0410F.1_g147000 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 5.3e-17 93.6 90 53.3
MCO10G143 Micromonas commoda HOM05D007837 ORTHO05D009965 2.0e-16 91.7 450 23.6
TAR086G0001 Trochodendron aralioides HOM05D007837 ORTHO05D009965 2.9e-15 87.8 62 66.1
TAR365G1222 Trochodendron aralioides HOM05D001154 ORTHO05D010892 8.5e-15 86.3 63 63.5
TAR626G1098 Trochodendron aralioides HOM05D001154 ORTHO05D010892 1.9e-14 85.1 63 63.5
PRCOL_00005542 Prasinoderma coloniale HOM05D007837 ORTHO05D009965 2.5e-14 84.7 338 26.3
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.6e-13 82.0 234 28.2
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.6e-13 82.0 234 28.2
TAR362G0005 Trochodendron aralioides HOM05D007837 ORTHO05D009965 4.7e-13 80.5 72 55.6
SMO263G0007 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 2.0e-11 75.1 237 24.9
Cpa.g.sc192.14 Carica papaya HOM05D007837 ORTHO05D009965 5.7e-11 73.6 58 62.1
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 9.7e-11 72.8 272 24.6
Sabra11G0145800 Salix brachista HOM05D007837 ORTHO05D009965 1.3e-10 72.4 135 35.6
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 2.7e-08 64.7 222 25.2
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 3.5e-08 64.3 207 27.5
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.5e-08 63.9 246 23.2
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 7.7e-08 63.2 278 23.7
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.0e-07 62.8 321 24.0
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 1.3e-07 62.4 238 24.4
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 3.8e-07 60.8 203 25.6
TAR371G0483 Trochodendron aralioides HOM05D001154 ORTHO05D010892 3.8e-07 60.8 40 65.0
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 5.0e-07 60.5 240 22.5
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 8.5e-07 59.7 84 42.9
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 1.1e-06 59.3 222 23.9
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 1.9e-06 58.5 181 25.4
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 2.5e-06 58.2 229 25.3
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.5e-06 58.2 305 22.6
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 3.2e-06 57.8 261 21.1
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 4.2e-06 57.4 289 23.9
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 4.2e-06 57.4 146 24.7
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 4.2e-06 57.4 287 21.6
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 4.2e-06 57.4 214 25.2
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 4.2e-06 57.4 236 23.7
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 4.2e-06 57.4 234 24.4
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 4.2e-06 57.4 196 23.0
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 5.5e-06 57.0 198 24.7
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 9.4e-06 56.2 299 23.7


User provided reference genes

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