Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 0.0e+00 2175.6 1409 100.0
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 0.0e+00 1580.8 1445 78.5
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 0.0e+00 1577.0 1445 78.5
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 0.0e+00 1575.5 1440 74.1
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 0.0e+00 1559.7 1445 76.2
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 0.0e+00 1473.0 1368 74.7
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 1.5e-286 990.3 1451 53.1
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 7.9e-280 968.0 998 57.3
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.3e-271 940.6 923 59.7
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 1.1e-262 911.0 1478 53.5
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 1.9e-204 717.6 1574 41.2
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 4.0e-199 699.9 1549 41.4
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 8.1e-192 675.6 1574 40.5
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 1.5e-185 654.8 1010 42.7
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 4.0e-167 593.6 1048 39.5
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 8.4e-165 585.9 1033 40.4
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.1e-164 585.5 1598 39.1
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 9.3e-164 582.4 1596 41.8
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 1.5e-161 575.1 1070 38.7
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 8.1e-160 569.3 1698 39.8
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 7.1e-156 556.2 1093 38.0
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 1.5e-150 538.5 863 41.8
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 3.2e-148 530.8 1035 37.2
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 1.2e-147 528.9 1055 37.3
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 3.5e-147 527.3 1033 37.7
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 5.1e-146 523.5 1047 37.3
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.3e-144 518.8 1559 37.7
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.4e-143 515.4 1567 40.3
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 9.4e-140 502.7 1571 39.0
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 9.7e-137 492.7 1547 37.8
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 4.8e-136 490.3 970 38.1
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 9.1e-135 486.1 932 37.8
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 1.0e-133 482.6 976 37.5
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 6.5e-133 479.9 894 39.6
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 7.4e-129 466.5 1574 35.2
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 9.7e-129 466.1 1536 32.0
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 6.3e-128 463.4 876 38.1
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 1.5e-126 458.8 1547 33.5
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 2.0e-126 458.4 941 36.3
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.7e-125 455.3 848 38.1
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 3.2e-124 451.1 977 35.4
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 7.2e-124 449.9 1563 31.9
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 9.7e-121 439.5 786 39.3
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 2.2e-120 438.3 765 40.1
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 1.0e-117 429.5 1000 33.9
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 1.3e-117 429.1 1199 32.1
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.6e-115 422.2 1596 33.9
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 2.1e-115 421.8 957 35.7
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 1.5e-113 415.6 1030 33.5
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 6.3e-112 410.2 979 35.0
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.4e-111 409.1 1028 33.7
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 2.7e-110 404.8 1015 33.9
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 1.3e-109 402.5 1505 31.8
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 8.5e-109 399.8 895 36.5
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 3.6e-107 394.4 1511 32.0
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 4.7e-107 394.0 975 34.4
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 3.7e-104 384.4 1036 32.8
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 3.1e-103 381.3 841 34.5
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 7.7e-102 376.7 1527 30.5
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 1.7e-101 375.6 1030 32.2
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 5.5e-100 370.5 967 33.7
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 7.2e-100 370.2 957 31.6
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 1.6e-99 369.0 957 32.4
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 6.1e-99 367.1 1542 33.5
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 1.8e-98 365.5 1022 30.5
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 1.3e-96 359.4 1575 34.7
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 8.3e-96 356.7 943 32.6
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.4e-95 355.9 913 31.0
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 5.4e-95 354.0 958 30.8
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 1.6e-94 352.4 904 32.5
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 2.7e-94 351.7 989 32.0
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 5.0e-93 347.4 1005 31.2
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 7.3e-92 343.6 930 32.5
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.2e-91 342.8 992 30.6
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 1.6e-91 342.4 950 30.8
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.8e-90 339.0 681 36.1
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 5.2e-90 337.4 1468 28.2
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 6.8e-90 337.0 1440 28.9
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 6.8e-90 337.0 1028 30.6
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 1.2e-89 336.3 1436 26.9
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.2e-89 336.3 964 30.6
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 2.0e-89 335.5 1446 30.8
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 5.8e-89 334.0 1444 30.8
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 2.9e-88 331.6 1464 27.1
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 5.4e-87 327.4 1444 30.3
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 1.6e-86 325.9 982 29.8
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 3.5e-86 324.7 1439 28.4
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 4.3e-84 317.8 779 32.3
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 3.6e-83 314.7 957 29.5
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 1.8e-82 312.4 926 30.3
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 4.9e-80 304.3 961 29.8
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 4.1e-79 301.2 779 30.8
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 1.1e-76 293.1 1404 31.3
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 1.2e-75 289.7 920 30.0
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 8.1e-75 287.0 763 32.1
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 1.9e-71 275.8 1453 28.9
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 1.2e-70 273.1 991 30.3
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 6.0e-70 270.8 932 28.5
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 6.0e-70 270.8 1418 31.8
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 3.0e-69 268.5 1421 31.5
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 1.1e-66 260.0 839 31.8
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 2.2e-64 252.3 684 31.7
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 6.2e-59 234.2 392 40.8
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 8.1e-59 233.8 392 40.8
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 8.1e-59 233.8 392 40.8
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 6.4e-56 224.2 685 28.2
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 5.4e-55 221.1 719 30.7
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 2.6e-49 202.2 723 29.6
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 3.2e-47 195.3 474 31.4
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 2.3e-45 189.1 527 31.7
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 4.0e-42 178.3 238 45.0
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 2.9e-40 172.2 281 39.1
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 1.3e-35 156.8 281 36.3
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 4.8e-35 154.8 441 32.0
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 4.5e-33 148.3 157 48.4
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 4.6e-30 138.3 372 29.3
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 3.9e-29 135.2 723 24.6
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 3.9e-29 135.2 452 28.8
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 4.3e-28 131.7 564 27.5
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 9.7e-28 130.6 294 33.3
FAN25G0646 Fragaria x ananassa HOM05D005129 ORTHO05D005585 8.2e-27 127.5 129 63.6
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 1.1e-26 127.1 286 33.2
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 2.0e-25 122.9 294 32.3
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.5e-20 105.9 105 53.3
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 3.3e-20 105.5 141 41.1
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 5.7e-20 104.8 146 37.0
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.3e-19 103.6 144 44.4
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 2.2e-19 102.8 324 29.0
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 6.9e-18 97.8 119 48.7
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 7.7e-17 94.4 130 45.4
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 8.5e-16 90.9 614 41.7
Lalb_Chr15g0088861 Lupinus albus HOM05D005129 ORTHO05D005585 1.4e-15 90.1 133 45.1
Lj6g0015855 Lotus japonicus HOM05D005129 ORTHO05D005585 7.2e-15 87.8 173 38.2
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.2e-14 87.0 116 50.0
TPR.G125 Trifolium pratense HOM05D005129 ORTHO05D005585 3.9e-13 82.0 87 51.7
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 6.7e-13 81.3 306 27.5
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 1.5e-12 80.1 132 42.4
PSO541G6300 Papaver somniferum HOM05D005129 ORTHO05D005585 9.7e-12 77.4 123 41.5
PSO675G1291 Papaver somniferum HOM05D005129 ORTHO05D005585 1.7e-11 76.6 122 41.0
PSO541G4161 Papaver somniferum HOM05D026995 ORTHO05D005585 2.2e-11 76.3 237 31.6
Sopen07g020710 Solanum pennellii HOM05D005129 ORTHO05D005585 3.7e-11 75.5 123 39.8
PSO675G3866 Papaver somniferum HOM05D026995 ORTHO05D005585 4.8e-11 75.1 259 37.5
Carub.0004s1646 Capsella rubella HOM05D005129 ORTHO05D005585 1.1e-10 73.9 129 38.0
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 1.4e-10 73.6 249 29.3
Aa31LG10G6530 Aethionema arabicum HOM05D005129 ORTHO05D005585 7.0e-10 71.2 130 35.4
BolC3t14646H Brassica oleracea HOM05D005129 ORTHO05D005585 2.5e-07 62.8 95 38.9
SMO228G0186 Selaginella moellendorffii HOM05D019256 ORTHO05D023510 2.5e-07 62.8 373 23.3
VMungo1080G1105 Vigna mungo HOM05D000424 ORTHO05D002854 7.2e-07 61.2 86 37.2


User provided reference genes

Program Settings