Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0016231 Rosa chinensis HOM05D000832 ORTHO05D347975 4.6e-25 117.1 59 100.0
RcHm_v2.0_Chr4g0436201 Rosa chinensis HOM05D000832 ORTHO05D000982 2.5e-10 68.2 39 84.6
FvH4_4g28350 Fragaria vesca HOM05D000832 ORTHO05D000982 2.7e-09 64.7 37 86.5
FAN12G1340 Fragaria x ananassa HOM05D000832 ORTHO05D000982 2.7e-09 64.7 37 86.5
FAN22G0367 Fragaria x ananassa HOM05D000832 ORTHO05D000982 2.7e-09 64.7 37 86.5
FAN17G1376 Fragaria x ananassa HOM05D000832 ORTHO05D000982 6.1e-09 63.5 37 83.8
MD13G1049200 Malus domestica HOM05D000832 ORTHO05D000982 7.9e-09 63.2 37 75.7
MD16G1050300 Malus domestica HOM05D000832 ORTHO05D000982 7.9e-09 63.2 37 75.7
FAN07G1155 Fragaria x ananassa HOM05D000832 ORTHO05D000982 1.8e-08 62.0 37 83.8
Peaxi162Scf00614g00038 Petunia axillaris HOM05D000832 ORTHO05D000982 3.9e-08 60.8 47 59.6
Prupe.1G302700 Prunus persica HOM05D000832 ORTHO05D000982 8.8e-08 59.7 37 73.0
Ciclev10030580m.g Citrus clementina HOM05D000832 ORTHO05D000982 3.3e-07 57.8 39 69.2
Nitab4.5_0003669g0010 Nicotiana tabacum HOM05D000832 ORTHO05D000982 5.7e-07 57.0 47 55.3
CiPaw.05G116300 Carya illinoinensis HOM05D000832 ORTHO05D000982 7.4e-07 56.6 47 55.3
Peaxi162Scf00369g00124 Petunia axillaris HOM05D000832 ORTHO05D000982 7.4e-07 56.6 47 55.3
CAN.G44.11 Capsicum annuum HOM05D000832 ORTHO05D000982 9.7e-07 56.2 47 53.2
Duzib248G1658 Durio zibethinus HOM05D000832 ORTHO05D000982 9.7e-07 56.2 39 64.1
Lj2g0012347 Lotus japonicus HOM05D000832 ORTHO05D000982 9.7e-07 56.2 37 67.6
Sp5g23860 Schrenkiella parvula HOM05D000832 ORTHO05D000982 9.7e-07 56.2 47 51.1
Thecc.02G363600 Theobroma cacao HOM05D000832 ORTHO05D000982 9.7e-07 56.2 39 64.1
VMungo0464G0422 Vigna mungo HOM05D000832 ORTHO05D020986 9.7e-07 56.2 37 64.9
VMungo1215G1721 Vigna mungo HOM05D000832 ORTHO05D000982 9.7e-07 56.2 37 64.9
DCAR_030097 Daucus carota HOM05D000832 ORTHO05D000982 1.3e-06 55.8 39 61.5
Thhalv10018058m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 1.3e-06 55.8 47 53.2
Cc11_g10810 Coffea canephora HOM05D000832 ORTHO05D000982 1.7e-06 55.5 47 53.2
Nitab4.5_0000221g0050 Nicotiana tabacum HOM05D000832 ORTHO05D000982 1.7e-06 55.5 47 53.2
Cpa.g.sc1.237 Carica papaya HOM05D000832 ORTHO05D000982 2.2e-06 55.1 39 61.5
COL.COLO4_07850 Corchorus olitorius HOM05D000832 ORTHO05D000982 2.2e-06 55.1 39 61.5
ECA234G2274 Erigeron canadensis HOM05D000832 ORTHO05D000982 2.2e-06 55.1 39 64.1
Nn3g17670 Nelumbo nucifera HOM05D000832 ORTHO05D000982 2.2e-06 55.1 36 72.2
Sabra10G0100500 Salix brachista HOM05D000832 ORTHO05D000982 2.2e-06 55.1 37 64.9
TWI31G0281 Tripterygium wilfordii HOM05D000832 ORTHO05D000982 2.2e-06 55.1 39 66.7
A07p31800 Brassica napus HOM05D000832 ORTHO05D000982 3.7e-06 54.3 47 48.9
C06p37340 Brassica napus HOM05D000832 ORTHO05D000982 3.7e-06 54.3 47 48.9
BolC6t38836H Brassica oleracea HOM05D000832 ORTHO05D000982 3.7e-06 54.3 47 48.9
BraA07t30807Z Brassica rapa HOM05D000832 ORTHO05D000982 3.7e-06 54.3 47 48.9
Eucgr.B03067 Eucalyptus grandis HOM05D000832 ORTHO05D000982 3.7e-06 54.3 37 67.6
Manes.06G074600 Manihot esculenta HOM05D000832 ORTHO05D000982 3.7e-06 54.3 37 67.6
Manes.14G095900 Manihot esculenta HOM05D000832 ORTHO05D000982 3.7e-06 54.3 37 67.6
Phvul.003G024800 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 3.7e-06 54.3 37 64.9
Potri.010G131800 Populus trichocarpa HOM05D000832 ORTHO05D000982 3.7e-06 54.3 36 66.7
PGR102G0673 Punica granatum HOM05D000832 ORTHO05D000982 3.7e-06 54.3 37 70.3
QL03p045000 Quercus lobata HOM05D000832 ORTHO05D000982 3.7e-06 54.3 37 64.9
TAR622G0475 Trochodendron aralioides HOM05D000832 ORTHO05D000982 3.7e-06 54.3 37 67.6
TAR702G0001 Trochodendron aralioides HOM05D000832 ORTHO05D000982 3.7e-06 54.3 37 67.6
arahy.Tifrunner.gnm1.ann1.WRC151 Arachis hypogaea HOM05D000832 ORTHO05D000982 4.8e-06 53.9 37 62.2
arahy.Tifrunner.gnm1.ann1.X6HICW Arachis hypogaea HOM05D000832 ORTHO05D000982 4.8e-06 53.9 37 62.2
Carub.0002s1530 Capsella rubella HOM05D000832 ORTHO05D000982 4.8e-06 53.9 37 64.9
Gohir.A12G172900 Gossypium hirsutum HOM05D000832 ORTHO05D000982 4.8e-06 53.9 39 64.1
Gohir.D12G175500 Gossypium hirsutum HOM05D000832 ORTHO05D000982 4.8e-06 53.9 39 64.1
Gorai.008G187900 Gossypium raimondii HOM05D000832 ORTHO05D000982 4.8e-06 53.9 39 64.1
Hma1.2p1_0406F.1_g145940 Hydrangea macrophylla HOM05D000832 ORTHO05D000982 4.8e-06 53.9 37 64.9
Lj3A1022G56 Lonicera japonica HOM05D000832 ORTHO05D000982 4.8e-06 53.9 47 55.3
GSVIVG01011979001 Vitis vinifera HOM05D000832 ORTHO05D000982 4.8e-06 53.9 37 67.6
CSS0027131 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 6.3e-06 53.5 37 67.6
AUR62002943 Chenopodium quinoa HOM05D000832 ORTHO05D000982 6.3e-06 53.5 45 55.6
AUR62007752 Chenopodium quinoa HOM05D000832 ORTHO05D000982 6.3e-06 53.5 45 55.6
CsaV3_5G028880 Cucumis sativus L. HOM05D000832 ORTHO05D000982 6.3e-06 53.5 39 59.0
Lsat_1_v5_gn_8_38141 Lactuca sativa HOM05D000832 ORTHO05D000982 6.3e-06 53.5 39 61.5
Lj6A768T59 Lonicera japonica HOM05D000832 ORTHO05D000982 6.3e-06 53.5 47 53.2
THA.LOC104808410 Tarenaya hassleriana HOM05D000832 ORTHO05D000982 6.3e-06 53.5 39 59.0
Atru.chr11.1403 Acer truncatum HOM05D000832 ORTHO05D000982 8.2e-06 53.1 39 59.0
AL1G39660 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 8.2e-06 53.1 39 61.5
Carub.0001s2485 Capsella rubella HOM05D000832 ORTHO05D000982 8.2e-06 53.1 39 61.5
Cfa008782 Carpinus fangiana HOM05D000832 ORTHO05D000982 8.2e-06 53.1 37 64.9
Haze_11794 Corylus avellana HOM05D000832 ORTHO05D000982 8.2e-06 53.1 37 64.9
Medtr0002s0890 Medicago truncatula HOM05D000832 ORTHO05D000982 8.2e-06 53.1 37 67.6
Solyc04g006970.4 Solanum lycopersicum HOM05D000832 ORTHO05D000982 8.2e-06 53.1 47 46.8
Sopen04g002020 Solanum pennellii HOM05D000832 ORTHO05D000982 8.2e-06 53.1 47 46.8


User provided reference genes

Program Settings