Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0016211 Rosa chinensis HOM05D004088 ORTHO05D004736 0.0e+00 1743.8 968 100.0
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 0.0e+00 1389.8 1002 79.8
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 0.0e+00 1202.6 997 72.0
FAN11G0925 Fragaria x ananassa HOM05D004088 ORTHO05D004736 0.0e+00 1190.3 985 71.0
FAN16G0404 Fragaria x ananassa HOM05D004088 ORTHO05D004736 0.0e+00 1185.6 1012 69.4
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 0.0e+00 1150.2 995 69.6
FAN25G3211 Fragaria x ananassa HOM05D004088 ORTHO05D004736 0.0e+00 1135.2 982 69.2
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 1.1e-267 927.2 1012 58.9
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 7.6e-250 867.8 1006 56.7
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 8.7e-238 827.8 996 55.5
RcHm_v2.0_Chr5g0016261 Rosa chinensis HOM05D004088 ORTHO05D004736 2.0e-221 773.5 719 69.3
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 2.7e-170 603.6 1002 43.3
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 4.3e-168 596.3 1007 42.0
Prupe.6G066700 Prunus persica HOM05D004088 ORTHO05D004736 4.3e-168 596.3 915 48.3
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 5.4e-163 579.3 1009 40.9
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 6.0e-162 575.9 1007 41.0
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 8.6e-161 572.0 982 41.4
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 4.0e-158 563.1 939 40.9
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 7.1e-155 552.4 1006 39.7
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 4.3e-152 543.1 970 40.0
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 4.3e-152 543.1 1004 39.2
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 5.6e-152 542.7 1007 39.6
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 1.2e-151 541.6 968 39.9
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 6.2e-151 539.3 1008 40.5
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 4.0e-150 536.6 965 41.1
QL05p062418 Quercus lobata HOM05D004088 ORTHO05D004736 2.2e-148 530.8 1006 40.2
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 4.2e-147 526.6 967 40.7
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 1.7e-145 521.2 996 37.7
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 1.1e-144 518.5 985 39.0
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 4.8e-143 513.1 988 38.3
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 5.3e-142 509.6 963 38.4
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 5.4e-139 499.6 949 41.4
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 4.6e-138 496.5 954 38.1
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 3.0e-137 493.8 1006 39.0
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 3.0e-137 493.8 1006 39.0
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 8.7e-137 492.3 971 38.3
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 1.1e-136 491.9 976 38.0
TAR629G1981 Trochodendron aralioides HOM05D004088 ORTHO05D004736 1.1e-136 491.9 983 37.5
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 1.1e-134 485.3 962 39.1
Gohir.D10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 1.4e-134 485.0 963 37.2
Ciclev10014183m.g Citrus clementina HOM05D004088 ORTHO05D004736 2.4e-134 484.2 977 38.8
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 3.1e-134 483.8 929 39.8
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 9.9e-133 478.8 963 39.0
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 6.4e-132 476.1 944 39.3
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 6.7e-129 466.1 939 38.3
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 6.7e-129 466.1 970 36.6
Rhsim13G0121800 Rhododendron simsii HOM05D004088 ORTHO05D004736 1.5e-128 464.9 947 38.5
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 2.1e-127 461.1 952 37.8
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 2.8e-127 460.7 954 37.9
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 3.4e-125 453.8 968 36.7
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 6.5e-124 449.5 963 36.8
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 8.4e-124 449.1 965 37.5
Glyma.15G130600 Glycine max HOM05D004088 ORTHO05D004736 1.1e-123 448.7 930 38.1
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 3.2e-123 447.2 957 36.2
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 1.2e-122 445.3 957 38.0
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 2.1e-122 444.5 961 36.0
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 1.8e-121 441.4 1007 36.4
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 9.6e-120 435.6 939 37.2
Gorai.011G004700 Gossypium raimondii HOM05D004088 ORTHO05D004736 1.3e-119 435.3 937 35.4
CAN.G79.31 Capsicum annuum HOM05D004088 ORTHO05D004736 6.3e-119 433.0 958 35.5
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 1.8e-118 431.4 967 36.2
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 2.0e-117 427.9 937 36.4
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.0e-116 425.6 956 35.0
Prupe.6G009000 Prunus persica HOM05D004088 ORTHO05D004736 8.5e-116 422.5 498 58.4
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 3.2e-115 420.6 963 34.9
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 7.2e-115 419.5 949 35.6
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 2.1e-114 417.9 949 35.4
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 1.3e-113 415.2 963 34.5
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 2.2e-111 407.9 929 36.7
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 9.1e-110 402.5 941 35.6
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 1.3e-108 398.7 945 34.1
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 5.0e-108 396.7 930 36.5
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 5.0e-108 396.7 941 35.2
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 2.0e-104 384.8 1014 33.5
VMungo0540G1975 Vigna mungo HOM05D004088 ORTHO05D004736 2.0e-104 384.8 926 35.3
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 5.9e-101 373.2 943 33.2
Solyc02g024000.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 1.3e-100 372.1 952 33.2
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 4.2e-99 367.1 931 33.7
Nitab4.5_0001225g0110 Nicotiana tabacum HOM05D004088 ORTHO05D004736 9.4e-99 365.9 951 33.2
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 1.2e-98 365.5 914 35.8
vmacro03381 Vaccinium macrocarpon HOM05D004088 ORTHO05D004736 3.6e-98 364.0 938 33.6
Nitab4.5_0001583g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 4.4e-96 357.1 922 33.7
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 4.5e-93 347.1 949 32.9
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 1.7e-92 345.1 931 32.3
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 1.1e-91 342.4 920 31.8
THA.LOC104814348 Tarenaya hassleriana HOM05D004088 ORTHO05D004736 1.5e-88 332.0 973 33.2
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 2.0e-88 331.6 943 32.3
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.2e-85 322.4 941 31.2
TAR627G0400 Trochodendron aralioides HOM05D004088 ORTHO05D004736 1.1e-83 315.8 641 38.8
Oeu060307.1 Olea europaea HOM05D004088 ORTHO05D004736 1.9e-83 315.1 918 32.0
Ah.14g086140 Amaranthus hybridus HOM05D002312 ORTHO05D006455 6.1e-82 310.1 921 30.2
MSTRG.13273 Avicennia marina HOM05D004088 ORTHO05D004736 2.3e-81 308.1 906 32.1
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 3.0e-81 307.8 780 35.4
EL10Ac8g19551 Beta vulgaris HOM05D004088 ORTHO05D004736 2.6e-80 304.7 916 31.1
Cpa.g.sc1123.1 Carica papaya HOM05D004088 ORTHO05D004736 1.6e-77 295.4 777 32.9
Oeu058484.1 Olea europaea HOM05D004088 ORTHO05D004736 9.5e-75 286.2 930 29.9
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 1.2e-74 285.8 950 28.2
Carub.0004s1642 Capsella rubella HOM05D004088 ORTHO05D004736 6.1e-74 283.5 972 30.8
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 5.4e-70 270.4 958 28.8
AT2G34730 Arabidopsis thaliana HOM05D004088 ORTHO05D004736 1.4e-65 255.8 969 29.3
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 1.5e-64 252.3 780 32.4
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 2.0e-64 251.9 955 29.1
Prupe.6G009100 Prunus persica HOM05D004088 ORTHO05D004736 7.5e-64 250.0 333 49.8
AUR62035797 Chenopodium quinoa HOM05D004088 ORTHO05D004736 4.9e-63 247.3 946 28.0
BolC3t14642H Brassica oleracea HOM05D004088 ORTHO05D004736 1.6e-61 242.3 966 28.4
AL4G30720 Arabidopsis lyrata HOM05D004088 ORTHO05D004736 3.0e-60 238.0 971 28.3
Lsat_1_v5_gn_2_8701 Lactuca sativa HOM05D004088 ORTHO05D004736 6.6e-60 236.9 917 29.3
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 3.6e-58 231.1 967 27.6
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 4.9e-55 220.7 934 26.3
ECA238G4729 Erigeron canadensis HOM05D004088 ORTHO05D004736 4.6e-53 214.2 941 26.6
CARHR128890 Cardamine hirsuta HOM05D004088 ORTHO05D004736 3.0e-52 211.5 961 26.6
Thhalv10017542m.g Eutrema salsugineum HOM05D004088 ORTHO05D004736 3.9e-52 211.1 751 30.1
MBI02_g16954_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 3.9e-52 211.1 725 31.4
Nitab4.5_0004734g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 6.6e-52 210.3 508 33.3
AUR62027558 Chenopodium quinoa HOM05D004088 ORTHO05D004736 8.6e-52 209.9 803 28.0
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 3.3e-51 208.0 928 25.2
Eucgr.E02499 Eucalyptus grandis HOM05D004088 ORTHO05D004736 1.2e-48 199.5 816 29.0
MBI02_g32067_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.3e-47 196.1 575 32.0
A03p19270 Brassica napus HOM05D004088 ORTHO05D004736 1.7e-47 195.7 783 29.0
BraA03t11181Z Brassica rapa HOM05D004088 ORTHO05D004736 3.2e-46 191.4 789 28.8
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 4.6e-45 187.6 685 29.8
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 4.6e-45 187.6 686 29.9
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 4.6e-45 187.6 685 29.8
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 2.3e-44 185.3 568 31.7
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 3.3e-43 181.4 923 25.8
Sp1g26400 Schrenkiella parvula HOM05D004088 ORTHO05D004736 1.2e-42 179.5 614 30.9
BraA09t39116Z Brassica rapa HOM05D004088 ORTHO05D004736 1.8e-41 175.6 577 30.5
C03p22460 Brassica napus HOM05D004088 ORTHO05D004736 5.4e-38 164.1 782 27.2
Aa31LG6G11780 Aethionema arabicum HOM05D004088 ORTHO05D004736 7.1e-38 163.7 884 26.1
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 1.6e-37 162.5 561 28.9
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 2.1e-37 162.2 593 28.5
Os12g0612300 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 7.8e-37 160.2 731 26.7
SHI20695 Sapria himalayana HOM05D004088 ORTHO05D004736 1.0e-36 159.8 841 26.6
TAR627G0836 Trochodendron aralioides HOM05D004088 ORTHO05D004736 1.3e-36 159.5 156 55.8
Zm00001eb420620 Zea mays HOM05D004088 ORTHO05D004736 2.5e-35 155.2 795 25.0
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 2.1e-34 152.1 593 28.0
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 8.1e-34 150.2 561 28.2
Zm00001eb136010 Zea mays HOM05D004088 ORTHO05D004736 5.2e-33 147.5 711 26.6
CDE04G2970 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 5.8e-32 144.1 517 26.5
Dinv01743 Davidia involucrata HOM05D004088 ORTHO05D004736 2.9e-31 141.7 123 57.7
Zm00001eb299950 Zea mays HOM05D004088 ORTHO05D004736 3.8e-31 141.4 796 24.2
Os09g0133800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 1.4e-30 139.4 678 25.7
Os07g0147800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 4.2e-30 137.9 750 25.5
CDE12G0038 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 2.1e-29 135.6 410 31.7
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 9.6e-27 126.7 807 23.7
Zm00001eb059840 Zea mays HOM05D004088 ORTHO05D004736 1.1e-25 123.2 745 23.5
CDE06G1544 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.2e-21 109.8 473 25.4
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 1.8e-20 105.9 196 35.7
BcaC01g05766 Brassica carinata HOM05D004088 ORTHO05D004736 6.7e-20 104.0 750 23.7
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 9.6e-19 100.1 121 43.0
Nitab4.5_0002819g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 2.8e-18 98.6 380 28.2
HPP92_017740 Vanilla planifolia HOM05D004088 ORTHO05D000818 2.0e-16 92.4 257 28.8
SEGI_22037 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 2.6e-16 92.0 759 21.6
Os03g0784600 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 4.9e-15 87.8 344 27.3
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 1.1e-14 86.7 247 29.1
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 1.9e-14 85.9 124 37.9
Zm00001eb261820 Zea mays HOM05D004088 ORTHO05D004736 3.2e-14 85.1 761 21.3
Os03g0784500 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 7.1e-14 84.0 256 28.1
Rhsim02G0161700 Rhododendron simsii HOM05D004088 ORTHO05D004736 1.6e-13 82.8 69 66.7
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 1.6e-13 82.8 106 39.6
Os04g0521600 Oryza sativa ssp. japonica HOM05D007562 ORTHO05D004736 6.0e-13 80.9 123 37.4
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 5.1e-12 77.8 131 33.6
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 6.7e-12 77.4 815 21.0
Gohir.A06G167500 Gossypium hirsutum HOM05D007562 ORTHO05D009721 6.7e-12 77.4 127 30.7
Dinv11774 Davidia involucrata HOM05D007562 ORTHO05D009721 1.5e-11 76.3 244 27.9
Manes.07G100522 Manihot esculenta HOM05D007562 ORTHO05D004736 2.5e-11 75.5 69 50.7
Gohir.D06G174900 Gossypium hirsutum HOM05D007562 ORTHO05D009721 4.3e-11 74.7 131 28.2
Duzib114G0316 Durio zibethinus HOM05D007562 ORTHO05D009721 5.6e-11 74.3 244 27.5
PGR142G4136 Punica granatum HOM05D007562 ORTHO05D009721 5.6e-11 74.3 136 30.9
Gorai.010G205300 Gossypium raimondii HOM05D007562 ORTHO05D009721 7.4e-11 73.9 193 25.4
Dinv01742 Davidia involucrata HOM05D004088 ORTHO05D004736 1.6e-10 72.8 362 27.6
CDE12G0814 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 2.8e-10 72.0 284 22.9
Cpa.g.sc53.79 Carica papaya HOM05D007562 ORTHO05D009721 3.7e-10 71.6 105 40.0
SMO351G0272 Selaginella moellendorffii HOM05D004088 ORTHO05D004736 3.7e-10 71.6 169 29.0
Potri.010G222200 Populus trichocarpa HOM05D007562 ORTHO05D009721 4.8e-10 71.2 164 31.7
ClCG05G020990 Citrullus lanatus HOM05D007562 ORTHO05D009721 6.2e-10 70.9 104 35.6
Ciclev10034000m.g Citrus clementina HOM05D007562 ORTHO05D004736 8.2e-10 70.5 89 43.8
Pp3c15_60 Physcomitrium patens HOM05D004088 ORTHO05D004736 1.1e-09 70.1 184 27.7
Zm00001eb246510 Zea mays HOM05D004088 ORTHO05D004736 1.1e-09 70.1 336 25.6
CDE12G0022 Ceratophyllum demersum HOM05D000617 ORTHO05D004736 1.4e-09 69.7 57 59.6
FAN10G0414 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.4e-09 69.7 80 46.2
Mapoly0015s0020 Marchantia polymorpha HOM05D004088 ORTHO05D004736 9.0e-09 67.0 503 23.7
Rhsim09G0152200 Rhododendron simsii HOM05D007562 ORTHO05D009721 8.4e-07 60.5 972 23.7
Hund03678 Selenicereus undatus HOM05D004088 ORTHO05D010054 8.4e-07 60.5 34 76.5
Nitab4.5_0000575g0170 Nicotiana tabacum HOM05D007562 ORTHO05D009721 3.2e-06 58.5 613 22.5
CARHR198320 Cardamine hirsuta HOM05D007562 ORTHO05D009721 4.2e-06 58.2 206 25.2


User provided reference genes

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