Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 3.3e-72 275.0 145 100.0
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 1.4e-30 136.7 83 88.0
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 4.0e-30 135.2 83 86.7
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 4.5e-29 131.7 90 78.9
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.5e-29 131.7 90 78.9
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.5e-29 131.7 90 78.9
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 4.5e-29 131.7 90 78.9
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.3e-28 130.2 90 77.8
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.3e-28 130.2 90 77.8
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-28 130.2 81 86.4
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 4.9e-28 128.3 84 81.0
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 8.4e-28 127.5 90 75.6
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 1.9e-27 126.3 90 74.4
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 1.6e-26 123.2 90 73.3
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 7.9e-26 120.9 90 71.1
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.9e-26 120.9 90 71.1
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.3e-25 119.4 87 74.7
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.0e-25 119.0 90 70.0
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 5.1e-25 118.2 90 70.0
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 8.7e-25 117.5 88 70.5
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 1.1e-24 117.1 88 69.3
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.5e-24 116.7 88 68.2
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.5e-24 116.7 88 68.2
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 2.5e-24 115.9 90 68.9
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 3.3e-24 115.5 90 67.8
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 4.3e-24 115.2 90 67.8
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 5.6e-24 114.8 114 55.3
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 5.6e-24 114.8 88 67.0
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 5.6e-24 114.8 109 58.7
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 7.4e-24 114.4 85 68.2
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 9.6e-24 114.0 109 58.7
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 9.6e-24 114.0 109 58.7
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 1.3e-23 113.6 88 67.0
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 1.3e-23 113.6 98 62.2
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 1.6e-23 113.2 88 67.0
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 1.6e-23 113.2 88 65.9
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.1e-23 112.8 90 66.7
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.1e-23 112.8 90 66.7
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 2.1e-23 112.8 90 66.7
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 2.1e-23 112.8 90 65.6
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 2.8e-23 112.5 88 65.9
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 4.8e-23 111.7 90 65.6
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 6.2e-23 111.3 90 64.4
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 8.2e-23 110.9 85 67.1
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 8.2e-23 110.9 85 67.1
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 8.2e-23 110.9 90 64.4
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 8.2e-23 110.9 88 65.9
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 1.1e-22 110.5 88 67.0
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 1.1e-22 110.5 88 64.8
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 1.8e-22 109.8 87 65.5
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 1.8e-22 109.8 90 63.3
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 2.4e-22 109.4 85 65.9
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.4e-22 109.4 85 67.1
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 2.4e-22 109.4 88 64.8
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 2.4e-22 109.4 90 64.4
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 3.1e-22 109.0 88 64.8
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 3.1e-22 109.0 88 64.8
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 4.0e-22 108.6 90 63.3
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 5.3e-22 108.2 90 64.4
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 9.0e-22 107.5 90 63.3
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 9.0e-22 107.5 85 63.5
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 1.2e-21 107.1 88 65.9
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 1.2e-21 107.1 90 63.3
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 1.2e-21 107.1 88 62.5
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 1.5e-21 106.7 90 63.3
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 1.5e-21 106.7 88 63.6
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 1.5e-21 106.7 88 62.5
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 1.5e-21 106.7 85 63.5
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 2.0e-21 106.3 85 64.7
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 2.6e-21 105.9 90 63.3
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 3.4e-21 105.5 90 62.2
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 3.4e-21 105.5 88 60.2
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 3.4e-21 105.5 90 62.2
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 4.5e-21 105.1 58 94.8
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 5.8e-21 104.8 88 60.2
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 5.8e-21 104.8 85 62.4
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 7.6e-21 104.4 85 61.2
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 1.3e-20 103.6 85 61.2
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 1.7e-20 103.2 85 60.0
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 4.9e-20 101.7 90 58.9
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 4.9e-20 101.7 88 62.5
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 4.9e-20 101.7 84 60.7
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 6.5e-20 101.3 88 62.5
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 6.5e-20 101.3 85 62.4
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 6.5e-20 101.3 88 62.5
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 8.4e-20 100.9 85 58.8
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 1.4e-19 100.1 84 58.3
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 1.9e-19 99.8 88 60.2
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 1.9e-19 99.8 90 62.2
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 2.5e-19 99.4 90 63.3
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 4.2e-19 98.6 88 60.2
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 7.1e-19 97.8 88 60.2
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 9.3e-19 97.4 86 60.5
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 2.1e-18 96.3 88 58.0
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 2.7e-18 95.9 88 59.1
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 2.7e-18 95.9 88 59.1
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 2.7e-18 95.9 90 56.7
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 2.7e-18 95.9 86 60.5
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 4.6e-18 95.1 84 56.0
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 4.6e-18 95.1 88 59.1
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 4.6e-18 95.1 88 59.1
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 4.6e-18 95.1 109 49.5
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 6.0e-18 94.7 88 60.2
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.0e-17 94.0 85 63.5
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 1.0e-17 94.0 90 54.4
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 2.3e-17 92.8 86 59.3
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 3.0e-17 92.4 90 55.6
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 1.5e-16 90.1 90 57.8
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 4.3e-16 88.6 90 56.7
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 9.7e-16 87.4 65 80.0
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 4.8e-15 85.1 90 51.1
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.1e-14 84.0 92 54.3
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 9.0e-14 80.9 131 40.5
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 1.2e-13 80.5 90 45.6
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 1.5e-13 80.1 41 92.7
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 2.6e-13 79.3 66 65.2
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 2.9e-12 75.9 91 50.5
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 3.6e-10 68.9 90 40.0
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 7.9e-10 67.8 64 54.7
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.9e-10 67.8 43 76.7
RcHm_v2.0_Chr7g0241351 Rosa chinensis HOM05D004469 ORTHO05D005429 7.9e-10 67.8 47 80.9
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.1e-08 63.9 52 65.4
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.1e-08 63.9 52 65.4
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-07 60.5 35 85.7
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 2.8e-07 59.3 69 42.0
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 1.1e-06 57.4 35 80.0
HanXRQChr01g0025721 Helianthus annuus HOM05D004469 ORTHO05D005429 3.1e-06 55.8 33 69.7
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 3.1e-06 55.8 85 34.1
arahy.Tifrunner.gnm1.ann1.RZAJ21 Arachis hypogaea HOM05D004469 ORTHO05D005429 9.1e-06 54.3 44 59.1


User provided reference genes

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