Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0016051 Rosa chinensis HOM05D005932 ORTHO05D006213 6.3e-63 244.2 147 100.0
FvH4_3g10110 Fragaria vesca HOM05D005932 ORTHO05D006213 2.2e-36 156.0 153 70.6
FAN11G2171 Fragaria x ananassa HOM05D005932 ORTHO05D006213 2.9e-36 155.6 148 69.6
FAN21G2441 Fragaria x ananassa HOM05D005932 ORTHO05D006213 1.1e-35 153.7 149 66.4
Prupe.4G090500 Prunus persica HOM05D005932 ORTHO05D006213 1.1e-27 127.1 148 60.8
FAN16G0402 Fragaria x ananassa HOM05D005932 ORTHO05D006213 1.6e-26 123.2 134 61.9
MD10G1253000 Malus domestica HOM05D005932 ORTHO05D006213 1.4e-25 120.2 146 58.2
FAN25G3656 Fragaria x ananassa HOM05D005932 ORTHO05D006213 6.3e-23 111.3 120 64.2
CANSAT35G0096 Cannabis sativa HOM05D005932 ORTHO05D006213 3.5e-21 105.5 138 60.9
MD05G1272900 Malus domestica HOM05D005932 ORTHO05D006213 1.7e-20 103.2 122 55.7
Manes.14G123400 Manihot esculenta HOM05D005932 ORTHO05D006213 1.5e-19 100.1 137 43.8
Duzib235G1239 Durio zibethinus HOM05D005932 ORTHO05D006213 1.9e-19 99.8 124 46.0
COL.COLO4_26835 Corchorus olitorius HOM05D005932 ORTHO05D006213 9.5e-19 97.4 138 42.0
Gohir.D10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 2.1e-18 96.3 128 47.7
Thecc.06G002100 Theobroma cacao HOM05D005932 ORTHO05D006213 2.8e-18 95.9 129 45.7
Atru.chr10.845 Acer truncatum HOM05D005932 ORTHO05D006213 3.6e-18 95.5 127 44.9
Gohir.A10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 6.1e-18 94.7 124 48.4
Gorai.011G004600 Gossypium raimondii HOM05D005932 ORTHO05D006213 1.0e-17 94.0 128 46.1
Manes.06G068200 Manihot esculenta HOM05D005932 ORTHO05D006213 2.6e-16 89.4 142 47.9
Hma1.2p1_0067F.1_g037010 Hydrangea macrophylla HOM05D005932 ORTHO05D006213 1.3e-15 87.0 133 40.6
Cfa000817 Carpinus fangiana HOM05D005932 ORTHO05D006213 1.1e-14 84.0 122 55.7
ClCG03G006250 Citrullus lanatus HOM05D005932 ORTHO05D006213 1.1e-14 84.0 143 37.8
Gohir.D02G103800 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.1e-14 84.0 122 39.3
Haze_05823 Corylus avellana HOM05D005932 ORTHO05D006213 1.8e-14 83.2 139 51.8
Gohir.A03G081000 Gossypium hirsutum HOM05D005932 ORTHO05D006213 3.1e-14 82.4 122 39.3
Gorai.005G117900 Gossypium raimondii HOM05D005932 ORTHO05D006213 3.1e-14 82.4 122 38.5
CiPaw.10G109100 Carya illinoinensis HOM05D005932 ORTHO05D006213 5.4e-14 81.6 142 43.7
Duzib192G0542 Durio zibethinus HOM05D005932 ORTHO05D006213 5.4e-14 81.6 116 42.2
TWI38G2281 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 7.0e-14 81.3 129 43.4
Sed0024512 Sechium edule HOM05D005932 ORTHO05D006213 1.2e-13 80.5 140 37.1
Sed0022461 Sechium edule HOM05D005932 ORTHO05D006213 2.7e-13 79.3 145 35.9
CSS0012768 Camellia sinensis var. sinensis HOM05D005932 ORTHO05D006213 3.5e-13 79.0 144 34.0
CiPaw.09G141700 Carya illinoinensis HOM05D005932 ORTHO05D006213 4.5e-13 78.6 139 34.5
VMungo0251G2717 Vigna mungo HOM05D005932 ORTHO05D006213 4.5e-13 78.6 133 39.1
Ca_17852_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 2.3e-12 76.3 135 36.3
Phvul.002G246500 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 2.3e-12 76.3 130 36.9
MBI18_g11291_MAGBIO Magnolia biondii HOM05D005932 ORTHO05D006213 2.9e-12 75.9 133 37.6
Rhsim02G0161400 Rhododendron simsii HOM05D005932 ORTHO05D006213 3.8e-12 75.5 125 33.6
SGA_v2.0_scaffold223G42865 Striga asiatica HOM05D005932 ORTHO05D006213 8.6e-12 74.3 138 39.1
Eucgr.D00155 Eucalyptus grandis HOM05D005932 ORTHO05D006213 1.1e-11 73.9 145 40.0
Glyma.05G166000 Glycine max HOM05D005932 ORTHO05D006213 2.5e-11 72.8 126 38.9
Sabra11G0088800 Salix brachista HOM05D005932 ORTHO05D006213 2.5e-11 72.8 131 38.2
TAR626G0301 Trochodendron aralioides HOM05D005932 ORTHO05D006213 4.3e-11 72.0 130 33.8
DCAR_003852 Daucus carota HOM05D005932 ORTHO05D006213 7.3e-11 71.2 130 32.3
PGR083G0615 Punica granatum HOM05D005932 ORTHO05D006213 7.3e-11 71.2 135 42.2
TPR.G6729 Trifolium pratense HOM05D005932 ORTHO05D006213 7.3e-11 71.2 129 33.3
Eucgr.D00169 Eucalyptus grandis HOM05D005932 ORTHO05D006213 9.5e-11 70.9 137 41.6
Glyma.08G124100 Glycine max HOM05D005932 ORTHO05D006213 9.5e-11 70.9 128 39.1
MSTRG.16291 Avicennia marina HOM05D005932 ORTHO05D006213 1.6e-10 70.1 145 35.9
Manes.05G115000 Manihot esculenta HOM05D005932 ORTHO05D006213 1.6e-10 70.1 142 33.8
Nitab4.5_0004734g0050 Nicotiana tabacum HOM05D005932 ORTHO05D006213 2.1e-10 69.7 126 34.1
CsaV3_1G037320 Cucumis sativus L. HOM05D005932 ORTHO05D006213 2.8e-10 69.3 125 36.8
TWI15G0856 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 2.8e-10 69.3 123 36.6
Dinv10792 Davidia involucrata HOM05D005932 ORTHO05D006213 3.6e-10 68.9 113 37.2
Potri.011G095000 Populus trichocarpa HOM05D005932 ORTHO05D006213 4.7e-10 68.6 134 35.8
Actinidia31387 Actinidia chinensis HOM05D005932 ORTHO05D006213 1.0e-09 67.4 124 32.3
Nitab4.5_0005178g0030 Nicotiana tabacum HOM05D005932 ORTHO05D006213 1.0e-09 67.4 144 29.2
Phvul.006G128300 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 1.0e-09 67.4 130 33.8
PGSC0003DMG400011812 Solanum tuberosum HOM05D005932 ORTHO05D006213 1.4e-09 67.0 132 31.8
VMungo0540G1966 Vigna mungo HOM05D005932 ORTHO05D006213 1.8e-09 66.6 129 34.9
Sopen02g019050 Solanum pennellii HOM05D005932 ORTHO05D006213 2.3e-09 66.2 131 34.4
SGA_v2.0_scaffold1G00270 Striga asiatica HOM05D005932 ORTHO05D006213 3.1e-09 65.9 130 37.7
unitig_37.g12073 Utricularia gibba HOM05D005932 ORTHO05D006213 4.0e-09 65.5 117 35.9
BcaC06g30675 Brassica carinata HOM05D005932 ORTHO05D006213 5.2e-09 65.1 128 37.5
BcaNung00838 Brassica carinata HOM05D005932 ORTHO05D006213 5.2e-09 65.1 139 35.3
BcaNung00840 Brassica carinata HOM05D005932 ORTHO05D006213 5.2e-09 65.1 139 35.3
BolC7t45634H Brassica oleracea HOM05D005932 ORTHO05D006213 5.2e-09 65.1 139 35.3
Lj4g0014090 Lotus japonicus HOM05D005932 ORTHO05D006213 5.2e-09 65.1 135 36.3
Medtr8g088330 Medicago truncatula HOM05D005932 ORTHO05D006213 5.2e-09 65.1 125 33.6
SalBow8G0055 Salvia bowleyana HOM05D005932 ORTHO05D006213 5.2e-09 65.1 136 36.0
Solyc02g024010.1 Solanum lycopersicum HOM05D005932 ORTHO05D006213 5.2e-09 65.1 129 32.6
Peaxi162Scf00395g00004 Petunia axillaris HOM05D005932 ORTHO05D006213 6.8e-09 64.7 124 33.1
A03p52900 Brassica napus HOM05D005932 ORTHO05D006213 1.2e-08 63.9 140 35.0
BraA03t14366Z Brassica rapa HOM05D005932 ORTHO05D006213 1.2e-08 63.9 140 35.0
Migut.M01897 Erythranthe guttata HOM05D005932 ORTHO05D006213 1.5e-08 63.5 123 34.1
Nitab4.5_0004615g0090 Nicotiana tabacum HOM05D005932 ORTHO05D006213 1.5e-08 63.5 121 34.7
Nn3g20198 Nelumbo nucifera HOM05D005932 ORTHO05D006213 2.0e-08 63.2 144 28.5
TWI63G1224 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 3.4e-08 62.4 112 35.7
Sopen02g006750 Solanum pennellii HOM05D005932 ORTHO05D006213 4.4e-08 62.0 128 34.4
unitig_92.g28172 Utricularia gibba HOM05D005932 ORTHO05D006213 4.4e-08 62.0 133 36.8
Lsat_1_v5_gn_2_93200 Lactuca sativa HOM05D005932 ORTHO05D006213 5.8e-08 61.6 131 34.4
QL05p061901 Quercus lobata HOM05D005932 ORTHO05D006213 7.5e-08 61.2 140 43.6
MSTRG.13271 Avicennia marina HOM05D005932 ORTHO05D006213 1.3e-07 60.5 135 31.1
C07p51350 Brassica napus HOM05D005932 ORTHO05D006213 1.3e-07 60.5 127 33.9
Sp1g26360 Schrenkiella parvula HOM05D012212 ORTHO05D006213 1.7e-07 60.1 133 38.3
Psat7g064920 Pisum sativum HOM05D005932 ORTHO05D006213 2.2e-07 59.7 126 33.3
Migut.H01328 Erythranthe guttata HOM05D005932 ORTHO05D006213 2.9e-07 59.3 126 34.9
Thhalv10009012m.g Eutrema salsugineum HOM05D012212 ORTHO05D006213 2.9e-07 59.3 127 37.8
Actinidia32363 Actinidia chinensis HOM05D005932 ORTHO05D006213 3.7e-07 58.9 105 34.3
Sp7g19900 Schrenkiella parvula HOM05D005932 ORTHO05D006213 4.9e-07 58.5 126 38.1
Aa31LG6G11760 Aethionema arabicum HOM05D012212 ORTHO05D006213 1.1e-06 57.4 136 38.2
Lalb_Chr07g0185951 Lupinus albus HOM05D005932 ORTHO05D006213 1.1e-06 57.4 126 32.5
Lalb_Chr18g0057981 Lupinus albus HOM05D005932 ORTHO05D006213 1.4e-06 57.0 130 28.5
Potri.001G371800 Populus trichocarpa HOM05D005932 ORTHO05D006213 1.9e-06 56.6 115 38.3
PGSC0003DMG400021122 Solanum tuberosum HOM05D005932 ORTHO05D006213 1.9e-06 56.6 136 31.6
CARHR228470 Cardamine hirsuta HOM05D005932 ORTHO05D006213 2.4e-06 56.2 138 34.8
AL1G44550 Arabidopsis lyrata HOM05D012212 ORTHO05D006213 5.4e-06 55.1 127 41.7
AT4G21740 Arabidopsis thaliana HOM05D005932 ORTHO05D006213 5.4e-06 55.1 139 37.4
Lj1P1161T30 Lonicera japonica HOM05D005932 ORTHO05D006213 5.4e-06 55.1 116 33.6
Sed0018131 Sechium edule HOM05D005932 ORTHO05D006213 5.4e-06 55.1 134 32.8
AL7G32200 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 7.0e-06 54.7 137 35.0
Cpa.g.sc166.34 Carica papaya HOM05D005932 ORTHO05D006213 7.0e-06 54.7 119 37.8
Lj2P330T27 Lonicera japonica HOM05D005932 ORTHO05D006213 9.2e-06 54.3 135 31.9
THA.LOC104798624 Tarenaya hassleriana HOM05D012212 ORTHO05D006213 9.2e-06 54.3 124 35.5


User provided reference genes

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