Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0015841 Rosa chinensis HOM05D002123 ORTHO05D002163 1.5e-30 135.6 71 100.0
RcHm_v2.0_Chr5g0015761 Rosa chinensis HOM05D002123 ORTHO05D002163 1.9e-20 102.1 55 98.2
ECA234G4376 Erigeron canadensis HOM05D002123 ORTHO05D002163 1.9e-12 75.5 47 80.9
MBI11_g05333_MAGBIO Magnolia biondii HOM05D002123 ORTHO05D002163 1.9e-12 75.5 46 82.6
FvH4_4g23410 Fragaria vesca HOM05D002123 ORTHO05D002163 3.2e-12 74.7 44 86.4
FAN07G0098 Fragaria x ananassa HOM05D002123 ORTHO05D002163 3.2e-12 74.7 44 86.4
FAN12G0966 Fragaria x ananassa HOM05D002123 ORTHO05D002163 3.2e-12 74.7 44 86.4
FAN17G0726 Fragaria x ananassa HOM05D002123 ORTHO05D002163 3.2e-12 74.7 44 86.4
Lj6A830T31 Lonicera japonica HOM05D002123 ORTHO05D002163 3.2e-12 74.7 44 86.4
TAR622G0646 Trochodendron aralioides HOM05D002123 ORTHO05D002163 3.2e-12 74.7 46 80.4
Cfa009389 Carpinus fangiana HOM05D002123 ORTHO05D002163 4.1e-12 74.3 44 84.1
Dinv11692 Davidia involucrata HOM05D002123 ORTHO05D002163 4.1e-12 74.3 46 80.4
Dinv17589 Davidia involucrata HOM05D002123 ORTHO05D002163 4.1e-12 74.3 46 80.4
Gohir.A03G123900 Gossypium hirsutum HOM05D002123 ORTHO05D002163 4.1e-12 74.3 44 84.1
Gohir.D02G146300 Gossypium hirsutum HOM05D002123 ORTHO05D002163 4.1e-12 74.3 44 84.1
Gorai.005G163700 Gossypium raimondii HOM05D002123 ORTHO05D002163 4.1e-12 74.3 44 84.1
GSVIVG01010531001 Vitis vinifera HOM05D002123 ORTHO05D002163 4.1e-12 74.3 46 80.4
Atru.chr11.2362 Acer truncatum HOM05D002123 ORTHO05D002163 5.4e-12 73.9 44 81.8
Cc11_g17220 Coffea canephora HOM05D002123 ORTHO05D002163 5.4e-12 73.9 44 84.1
Duzib268G0806 Durio zibethinus HOM05D002123 ORTHO05D002163 5.4e-12 73.9 44 86.4
Manes.12G008300 Manihot esculenta HOM05D002123 ORTHO05D002163 5.4e-12 73.9 44 84.1
Potri.003G168400 Populus trichocarpa HOM05D002123 ORTHO05D002163 5.4e-12 73.9 44 84.1
Prupe.1G222600 Prunus persica HOM05D002123 ORTHO05D002163 5.4e-12 73.9 43 88.4
RcHm_v2.0_Chr4g0429781 Rosa chinensis HOM05D002123 ORTHO05D002163 5.4e-12 73.9 44 86.4
Sabra01G0042700 Salix brachista HOM05D002123 ORTHO05D002163 5.4e-12 73.9 44 84.1
TWI18G1134 Tripterygium wilfordii HOM05D002123 ORTHO05D002163 5.4e-12 73.9 44 86.4
Actinidia39796 Actinidia chinensis HOM05D002123 ORTHO05D002163 7.1e-12 73.6 44 84.1
EL10Ac6g13539 Beta vulgaris HOM05D002123 ORTHO05D002163 7.1e-12 73.6 44 84.1
CANSAT01G0678 Cannabis sativa HOM05D002123 ORTHO05D002163 7.1e-12 73.6 43 86.0
CDE02G2772 Ceratophyllum demersum HOM05D002123 ORTHO05D002163 7.1e-12 73.6 46 80.4
AUR62005651 Chenopodium quinoa HOM05D002123 ORTHO05D002163 7.1e-12 73.6 44 84.1
AUR62028900 Chenopodium quinoa HOM05D002123 ORTHO05D002163 7.1e-12 73.6 44 84.1
Potri.001G059500 Populus trichocarpa HOM05D002123 ORTHO05D002163 7.1e-12 73.6 44 81.8
SalBow2G0932 Salvia bowleyana HOM05D002123 ORTHO05D002163 7.1e-12 73.6 44 81.8
TWI36G1670 Tripterygium wilfordii HOM05D002123 ORTHO05D002163 7.1e-12 73.6 44 86.4
ClCG06G002030 Citrullus lanatus HOM05D002123 ORTHO05D002163 9.2e-12 73.2 44 84.1
Ciclev10033886m.g Citrus clementina HOM05D002123 ORTHO05D002163 9.2e-12 73.2 47 76.6
MELO3C022327.2 Cucumis melo HOM05D002123 ORTHO05D002163 9.2e-12 73.2 43 86.0
CsaV3_6G008080 Cucumis sativus L. HOM05D002123 ORTHO05D002163 9.2e-12 73.2 44 84.1
Duzib251G0099 Durio zibethinus HOM05D002123 ORTHO05D002163 9.2e-12 73.2 44 84.1
HanXRQChr08g0224781 Helianthus annuus HOM05D002123 ORTHO05D002163 9.2e-12 73.2 44 81.8
Lsat_1_v5_gn_4_300 Lactuca sativa HOM05D002123 ORTHO05D002163 9.2e-12 73.2 44 81.8
MD13G1122600 Malus domestica HOM05D002123 ORTHO05D002163 9.2e-12 73.2 44 84.1
Nitab4.5_0002277g0020 Nicotiana tabacum HOM05D002123 ORTHO05D002163 9.2e-12 73.2 44 81.8
COL.COLO4_05014 Corchorus olitorius HOM05D002123 ORTHO05D002163 1.2e-11 72.8 44 84.1
Solyc05g015890.4 Solanum lycopersicum HOM05D002123 ORTHO05D002163 1.2e-11 72.8 44 79.5
Sopen05g011630 Solanum pennellii HOM05D002123 ORTHO05D002163 1.2e-11 72.8 44 79.5
PGSC0003DMG400019812 Solanum tuberosum HOM05D002123 ORTHO05D002163 1.2e-11 72.8 44 79.5
THA.LOC104812598 Tarenaya hassleriana HOM05D002123 ORTHO05D002163 1.2e-11 72.8 43 86.0
QL03p051618 Quercus lobata HOM05D002123 ORTHO05D002163 1.6e-11 72.4 44 81.8
Aqoxy5G03291 Aquilegia oxysepala HOM05D002123 ORTHO05D002163 2.1e-11 72.0 43 81.4
Peaxi162Scf00128g01543 Petunia axillaris HOM05D002123 ORTHO05D002163 2.1e-11 72.0 44 79.5
Sed0017372 Sechium edule HOM05D002123 ORTHO05D002163 2.1e-11 72.0 44 79.5
CiPaw.05G106900 Carya illinoinensis HOM05D002123 ORTHO05D002163 2.7e-11 71.6 44 81.8
Gohir.A04G141400 Gossypium hirsutum HOM05D002123 ORTHO05D002163 2.7e-11 71.6 44 81.8
Gohir.D04G187500 Gossypium hirsutum HOM05D002123 ORTHO05D002163 2.7e-11 71.6 44 81.8
Gorai.012G180900 Gossypium raimondii HOM05D002123 ORTHO05D002163 2.7e-11 71.6 44 81.8
Thecc.02G201500 Theobroma cacao HOM05D002123 ORTHO05D002163 2.7e-11 71.6 44 79.5
Migut.K01005 Erythranthe guttata HOM05D002123 ORTHO05D002163 3.5e-11 71.2 43 81.4
Oeu011354.1 Olea europaea HOM05D002123 ORTHO05D002163 3.5e-11 71.2 44 81.8
Rhsim12G0023800 Rhododendron simsii HOM05D002123 ORTHO05D002163 3.5e-11 71.2 44 79.5
Sc11g0000350 Simmondsia chinensis HOM05D002123 ORTHO05D002163 3.5e-11 71.2 44 75.0
Cpa.g.c34675.2 Carica papaya HOM05D002123 ORTHO05D002163 4.6e-11 70.9 44 81.8
Duzib248G1603 Durio zibethinus HOM05D002123 ORTHO05D002163 4.6e-11 70.9 44 81.8
HanXRQChr08g0209961 Helianthus annuus HOM05D002123 ORTHO05D002163 4.6e-11 70.9 44 81.8
MD16G1123100 Malus domestica HOM05D002123 ORTHO05D002163 4.6e-11 70.9 44 84.1
PSO017G7185 Papaver somniferum HOM05D002123 ORTHO05D002163 4.6e-11 70.9 44 79.5
TAR374G1717 Trochodendron aralioides HOM05D002123 ORTHO05D002163 4.6e-11 70.9 44 81.8
Eucgr.B03524 Eucalyptus grandis HOM05D002123 ORTHO05D002163 6.0e-11 70.5 46 76.1
Nn3g16398 Nelumbo nucifera HOM05D002123 ORTHO05D002163 6.0e-11 70.5 44 77.3
PSO478G5011 Papaver somniferum HOM05D002123 ORTHO05D002163 6.0e-11 70.5 44 79.5
BcaC05g26611 Brassica carinata HOM05D002123 ORTHO05D002163 1.0e-10 69.7 43 83.7
BcaC05g26795 Brassica carinata HOM05D002123 ORTHO05D002163 1.0e-10 69.7 43 83.7
A09p38190 Brassica napus HOM05D002123 ORTHO05D002163 1.0e-10 69.7 43 83.7
BolC5t31380H Brassica oleracea HOM05D002123 ORTHO05D002163 1.0e-10 69.7 43 83.7
BraA09t39332Z Brassica rapa HOM05D002123 ORTHO05D002163 1.0e-10 69.7 43 83.7
Carub.0001s2644 Capsella rubella HOM05D002123 ORTHO05D002163 1.0e-10 69.7 43 83.7
CARHR027420 Cardamine hirsuta HOM05D002123 ORTHO05D002163 1.0e-10 69.7 43 83.7
Hma1.2p1_0065F.1_g035060 Hydrangea macrophylla HOM05D002123 ORTHO05D002163 1.0e-10 69.7 46 73.9
PGR102G3070 Punica granatum HOM05D002123 ORTHO05D002163 1.0e-10 69.7 46 73.9
arahy.Tifrunner.gnm1.ann1.Z3Z7Z5 Arachis hypogaea HOM05D002123 ORTHO05D002163 1.3e-10 69.3 44 79.5
Ca_16993_v3 Cicer arietinum L. HOM05D002123 ORTHO05D002163 1.3e-10 69.3 44 75.0
Ca_17021_v3 Cicer arietinum L. HOM05D002123 ORTHO05D002163 1.3e-10 69.3 44 75.0
DCAR_004670 Daucus carota HOM05D002123 ORTHO05D002163 1.3e-10 69.3 44 75.0
Lsat_1_v5_gn_3_31180 Lactuca sativa HOM05D002123 ORTHO05D002163 1.3e-10 69.3 44 77.3
Lj4g0021124 Lotus japonicus HOM05D002123 ORTHO05D002163 1.3e-10 69.3 44 75.0
Psat5g300400 Pisum sativum HOM05D002123 ORTHO05D002163 1.3e-10 69.3 46 73.9
ECA233G4992 Erigeron canadensis HOM05D002123 ORTHO05D002163 1.7e-10 68.9 44 79.5
Medtr8g094540 Medicago truncatula HOM05D002123 ORTHO05D002163 1.7e-10 68.9 44 77.3
Sp1g24180 Schrenkiella parvula HOM05D002123 ORTHO05D002163 1.7e-10 68.9 43 81.4
TPR.G37413 Trifolium pratense HOM05D002123 ORTHO05D002163 1.7e-10 68.9 44 77.3
vmacro01049 Vaccinium macrocarpon HOM05D002123 ORTHO05D002163 1.7e-10 68.9 44 79.5
ATR1153G049 Amborella trichopoda HOM05D002123 ORTHO05D002163 2.3e-10 68.6 44 77.3
CSS0022035 Camellia sinensis var. sinensis HOM05D002123 ORTHO05D002163 2.3e-10 68.6 44 81.8
Manes.13G008800 Manihot esculenta HOM05D002123 ORTHO05D002163 2.3e-10 68.6 44 79.5
Zm00001eb421070 Zea mays HOM05D002123 ORTHO05D002163 2.3e-10 68.6 47 72.3
Glyma.04G208700 Glycine max HOM05D002123 ORTHO05D002163 3.0e-10 68.2 44 75.0
Glyma.06G157000 Glycine max HOM05D002123 ORTHO05D002163 3.9e-10 67.8 44 72.7
Psat7g044280 Pisum sativum HOM05D002123 ORTHO05D002163 3.9e-10 67.8 44 75.0
Phvul.009G153300 Phaseolus vulgaris HOM05D002123 ORTHO05D002163 5.1e-10 67.4 44 72.7
AL1G41490 Arabidopsis lyrata HOM05D002123 ORTHO05D002163 6.6e-10 67.0 43 81.4
AT1G27990 Arabidopsis thaliana HOM05D002123 ORTHO05D002163 6.6e-10 67.0 43 81.4
CiPaw.06G105200 Carya illinoinensis HOM05D002123 ORTHO05D002163 6.6e-10 67.0 44 72.7
Lalb_Chr11g0068681 Lupinus albus HOM05D002123 ORTHO05D002163 6.6e-10 67.0 44 72.7
Medtr3g096890 Medicago truncatula HOM05D002123 ORTHO05D002163 6.6e-10 67.0 44 72.7
Phvul.002G274900 Phaseolus vulgaris HOM05D002123 ORTHO05D002163 6.6e-10 67.0 47 68.1
SEGI_00369 Sequoiadendron giganteum HOM05D002123 ORTHO05D002163 6.6e-10 67.0 43 74.4
TPR.G33576 Trifolium pratense HOM05D002123 ORTHO05D002163 6.6e-10 67.0 44 72.7
MSTRG.482 Avicennia marina HOM05D002123 ORTHO05D002163 8.6e-10 66.6 43 76.7
Lj1g0010020 Lotus japonicus HOM05D002123 ORTHO05D002163 1.1e-09 66.2 44 72.7
VMungo1309G2856 Vigna mungo HOM05D002123 ORTHO05D002163 1.1e-09 66.2 44 70.5
Thhalv10009696m.g Eutrema salsugineum HOM05D002123 ORTHO05D002163 1.5e-09 65.9 43 79.1
Glyma.05G194800 Glycine max HOM05D002123 ORTHO05D002163 1.5e-09 65.9 48 66.7
SGA_v2.0_scaffold100G29560 Striga asiatica HOM05D002123 ORTHO05D002163 1.5e-09 65.9 43 72.1
Lalb_Chr08g0238091 Lupinus albus HOM05D002123 ORTHO05D002163 1.9e-09 65.5 44 72.7
HPP92_024311 Vanilla planifolia HOM05D002123 ORTHO05D002163 2.5e-09 65.1 44 72.7
Aa31sc146G100 Aethionema arabicum HOM05D002123 ORTHO05D002163 4.3e-09 64.3 43 76.7
Ah.03g135950 Amaranthus hybridus HOM05D002123 ORTHO05D002163 5.6e-09 63.9 44 70.5
HPP92_024287 Vanilla planifolia HOM05D002123 ORTHO05D002163 7.3e-09 63.5 44 68.2
Lj3A1073T47 Lonicera japonica HOM05D002123 ORTHO05D002163 9.5e-09 63.2 46 63.0
Os04g0386700 Oryza sativa ssp. japonica HOM05D002123 ORTHO05D002163 1.2e-08 62.8 48 66.7
SHI30235 Sapria himalayana HOM05D002123 ORTHO05D002163 1.6e-08 62.4 44 68.2
Mapoly0060s0040 Marchantia polymorpha HOM05D002123 ORTHO05D002163 2.1e-08 62.0 43 69.8
ClCG02G011000 Citrullus lanatus HOM05D002123 ORTHO05D002163 2.8e-08 61.6 46 76.1
arahy.Tifrunner.gnm1.ann1.3RV0PL Arachis hypogaea HOM05D002123 ORTHO05D002163 4.7e-08 60.8 44 65.9
arahy.Tifrunner.gnm1.ann1.P617JY Arachis hypogaea HOM05D002123 ORTHO05D002163 4.7e-08 60.8 44 68.2
Pp3c12_24110 Physcomitrium patens HOM05D002123 ORTHO05D002163 2.4e-07 58.5 43 60.5
Pp3c7_9360 Physcomitrium patens HOM05D002123 ORTHO05D002163 6.8e-07 57.0 44 59.1
Pp3c1_12130 Physcomitrium patens HOM05D002123 ORTHO05D002163 1.2e-06 56.2 44 59.1
SMO137G0090 Selaginella moellendorffii HOM05D002123 ORTHO05D002163 4.4e-06 54.3 44 59.1
AagrBONN_evm.TU.Sc2ySwM_344.2481 Anthoceros agrestis HOM05D002123 ORTHO05D002163 5.8e-06 53.9 44 56.8


User provided reference genes

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