Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 3315.4 1713 100.0
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 3068.1 1721 91.5
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 3060.8 1721 91.5
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 3041.9 1721 91.0
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 3023.8 1721 90.5
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 3020.7 1721 90.6
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2835.4 1717 84.3
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2792.7 1715 83.6
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2649.4 1777 78.8
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2627.0 1719 77.7
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2599.3 1714 76.6
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2587.0 1718 76.4
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2572.0 1721 75.4
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2569.7 1718 76.5
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2564.6 1715 75.9
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2532.3 1717 74.8
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2530.0 1721 75.2
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2519.2 1711 74.5
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2512.6 1719 75.0
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2510.7 1696 74.6
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2487.6 1721 73.7
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2481.4 1720 73.1
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2481.4 1715 73.1
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2471.4 1716 73.7
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2466.0 1722 73.3
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2460.3 1736 72.6
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2459.9 1721 72.9
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2457.9 1728 72.7
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2443.7 1727 72.1
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2427.9 1721 72.5
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2423.7 1707 72.2
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2413.6 1735 71.4
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2407.1 1735 71.2
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2407.1 1727 72.1
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2403.2 1734 69.8
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2402.1 1721 72.2
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2382.8 1668 73.3
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2378.6 1684 72.4
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2376.7 1733 69.4
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2376.3 1730 70.7
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2363.2 1734 68.9
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2354.7 1709 71.5
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2351.2 1722 70.4
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2350.1 1773 69.9
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2345.1 1733 67.9
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2344.7 1737 69.0
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2335.5 1733 67.5
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2335.1 1724 70.5
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2333.9 1714 68.7
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2330.1 1722 69.1
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2325.8 1716 69.1
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2299.6 1724 68.6
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2288.1 1774 68.8
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2287.7 1884 64.9
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2280.8 1763 67.0
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2280.4 1732 68.6
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2277.3 1733 68.0
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2271.9 1685 69.0
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2263.4 1704 68.8
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2253.4 1692 68.2
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2246.5 1661 68.8
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2244.2 1412 77.6
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2243.0 1701 68.3
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2238.8 1696 67.9
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2236.5 1738 66.5
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2223.4 1708 67.2
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2223.0 1717 66.6
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2219.5 1720 66.6
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2219.1 1708 67.2
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2217.6 1722 66.5
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2211.8 1727 66.2
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2211.8 1703 66.1
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2198.3 1682 67.8
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2196.8 1684 66.7
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2194.1 1716 65.9
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2192.9 1731 65.5
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 2176.0 2138 57.1
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2150.6 1761 64.3
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2130.9 1697 64.9
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 2125.5 1643 66.2
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 2097.0 1290 78.0
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 2091.6 1294 77.3
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 2085.1 1717 63.1
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 2079.3 1687 63.9
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 2060.8 1703 61.4
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1991.1 1667 62.4
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1989.9 1724 60.3
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1971.4 1157 81.5
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1946.0 1458 67.9
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1929.8 1657 60.0
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1911.0 1798 58.4
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1852.0 1735 60.4
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1806.6 1471 65.0
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1757.7 1629 56.0
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1724.1 1707 54.0
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1723.8 1684 53.1
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1714.1 1684 54.6
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1703.7 1043 79.1
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1659.8 1675 52.7
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1565.4 934 80.1
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1533.5 1131 71.4
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1512.7 1083 65.8
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1443.7 1089 72.5
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1394.4 1358 55.9
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1375.9 1179 63.3
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1204.5 934 69.0
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1184.9 910 65.2
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 1.7e-300 1036.9 740 68.6
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 8.3e-300 1034.6 614 81.3
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 2.4e-275 953.4 599 75.6
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 4.4e-269 932.6 681 64.0
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.2e-258 897.9 553 79.4
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 7.1e-251 872.1 848 58.5
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.6e-247 860.9 1583 36.2
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 1.8e-209 734.6 847 42.5
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 7.8e-197 692.6 429 77.6
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 2.8e-186 657.5 333 98.2
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 2.4e-166 591.3 600 62.0
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 3.8e-159 567.4 374 73.5
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 3.0e-140 504.6 633 52.9
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 1.8e-137 495.4 340 79.4
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 4.5e-128 464.2 906 33.8
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 7.2e-126 456.8 698 39.8
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 2.9e-111 408.3 246 75.6
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 6.7e-108 397.1 431 45.0
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 8.2e-106 390.2 241 77.2
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.3e-103 382.9 524 51.1
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.3e-97 360.9 214 74.8
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 1.0e-84 320.1 401 56.6
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.8e-81 309.3 201 76.6
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 8.9e-76 290.4 176 73.3
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 5.4e-73 281.2 176 73.9
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 3.1e-60 238.8 153 71.9
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 4.0e-52 211.8 439 42.1
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 5.8e-51 208.0 203 47.3
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.0e-47 197.2 113 85.0
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 2.3e-47 196.1 129 69.0
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 1.3e-42 180.3 217 56.7
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 4.9e-42 178.3 98 90.8
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.2e-40 173.7 130 60.0
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 4.8e-37 161.8 169 52.1
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 2.7e-32 146.0 285 41.1
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 1.1e-30 140.6 205 45.4
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 1.6e-29 136.7 123 54.5
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 3.8e-26 125.6 88 69.3
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 4.9e-26 125.2 102 61.8
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 1.4e-25 123.6 288 40.3
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 5.5e-25 121.7 72 80.6
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 7.1e-25 121.3 83 67.5
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 1.2e-24 120.6 93 65.6
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.3e-23 117.1 61 83.6
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 8.7e-23 114.4 63 85.7
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 1.1e-22 114.0 61 95.1
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 4.8e-21 108.6 215 35.3
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 1.1e-20 107.5 74 74.3
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 1.7e-18 100.1 84 57.1
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 4.2e-17 95.5 58 74.1
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 2.7e-16 92.8 283 35.7
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 2.3e-15 89.7 98 42.9
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.3e-13 84.0 49 83.7
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 1.6e-13 83.6 49 79.6
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 2.4e-12 79.7 51 64.7
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 5.3e-12 78.6 50 76.0
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 1.5e-11 77.0 68 58.8
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 2.9e-10 72.8 72 52.8
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 6.5e-10 71.6 165 32.1
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.1e-09 70.9 95 40.0
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 3.2e-09 69.3 44 61.4
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 5.5e-09 68.6 70 51.4
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 7.2e-09 68.2 44 75.0
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 2.1e-08 66.6 57 56.1
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 2.7e-08 66.2 108 44.4
Oeu025478.1 Olea europaea HOM05D002278 ORTHO05D007219 3.3e-06 59.3 157 30.6
Actinidia04622 Actinidia chinensis HOM05D004072 ORTHO05D019491 4.3e-06 58.9 45 57.8


User provided reference genes

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