Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 3.4e-197 691.4 337 100.0
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 4.4e-189 664.5 332 97.0
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 4.6e-186 654.4 337 94.7
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 6.6e-185 650.6 337 94.4
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 8.1e-183 643.7 337 92.9
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 1.6e-170 602.8 338 86.1
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 4.6e-170 601.3 337 85.5
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 9.6e-168 593.6 335 84.2
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 1.1e-166 590.1 339 85.0
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 7.6e-165 583.9 337 82.8
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 5.0e-164 581.3 335 82.7
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 1.2e-162 576.6 337 82.5
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 1.0e-161 573.5 337 82.2
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 3.9e-161 571.6 335 81.8
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 3.3e-160 568.5 337 81.3
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 1.3e-159 566.6 337 81.0
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 2.2e-159 565.8 337 80.4
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 3.7e-159 565.1 337 78.9
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 1.8e-158 562.8 335 81.2
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.4e-158 562.4 335 80.3
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.4e-158 562.4 335 80.3
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 2.4e-158 562.4 337 80.4
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 2.4e-158 562.4 337 79.5
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 6.9e-158 560.8 337 80.4
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.2e-157 560.1 337 79.8
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.2e-157 560.1 337 79.8
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 1.3e-156 556.6 337 80.1
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.3e-156 556.6 337 79.5
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.3e-156 556.6 337 79.8
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.3e-156 556.6 337 79.8
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 2.2e-156 555.8 337 79.2
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 1.1e-155 553.5 336 78.0
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 1.4e-155 553.1 335 77.9
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 2.5e-155 552.4 337 76.9
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 3.2e-155 552.0 337 79.2
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 4.2e-155 551.6 337 77.4
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 7.2e-155 550.8 337 76.9
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 2.1e-154 549.3 337 79.2
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 4.6e-154 548.1 336 77.7
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 6.1e-154 547.7 329 79.0
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 5.1e-153 544.7 337 76.3
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 5.1e-153 544.7 333 78.1
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 5.7e-152 541.2 337 74.5
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 1.3e-151 540.0 337 75.7
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 2.8e-151 538.9 334 76.6
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 8.2e-151 537.3 337 75.1
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 1.1e-150 537.0 337 76.9
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 1.1e-150 537.0 336 76.5
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 1.4e-150 536.6 332 78.0
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 3.1e-150 535.4 337 77.7
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 4.1e-150 535.0 337 74.5
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 6.9e-150 534.3 337 76.0
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 9.1e-150 533.9 346 75.4
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 9.1e-150 533.9 337 74.5
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 2.0e-149 532.7 289 91.3
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 2.0e-149 532.7 337 74.8
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 4.5e-149 531.6 338 75.7
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.3e-148 530.0 337 73.9
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.7e-148 529.6 335 76.1
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.8e-148 528.5 330 75.5
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 5.0e-148 528.1 337 76.6
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 1.4e-147 526.6 333 74.2
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 1.4e-147 526.6 338 74.9
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 2.5e-147 525.8 337 74.2
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 3.2e-147 525.4 337 72.7
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 7.2e-147 524.2 337 73.9
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 7.2e-147 524.2 337 73.9
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 1.6e-146 523.1 341 73.6
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 4.7e-146 521.5 338 74.9
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 6.1e-146 521.2 337 74.8
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 6.1e-146 521.2 335 75.2
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 8.8e-145 517.3 334 74.3
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 1.1e-144 516.9 330 75.5
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 2.6e-144 515.8 337 76.3
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 3.3e-144 515.4 337 72.1
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 3.3e-144 515.4 334 74.6
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 1.7e-143 513.1 330 72.4
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 2.2e-143 512.7 335 72.2
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 2.8e-143 512.3 337 73.6
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 3.7e-143 511.9 339 71.7
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 1.2e-141 506.9 331 72.2
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 1.0e-140 503.8 334 73.1
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 5.0e-140 501.5 345 71.9
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.1e-139 500.4 337 71.2
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 1.1e-139 500.4 331 71.0
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.2e-139 498.4 337 71.2
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 7.2e-139 497.7 338 71.9
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 1.2e-138 496.9 311 73.3
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 2.7e-138 495.7 338 70.7
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 3.0e-137 492.3 330 73.6
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 5.2e-137 491.5 337 70.6
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 2.2e-135 486.1 330 68.8
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 1.1e-134 483.8 338 69.2
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 7.0e-134 481.1 335 71.6
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.6e-133 479.9 337 71.5
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 4.5e-133 478.4 337 67.7
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 2.9e-132 475.7 334 68.9
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 3.8e-132 475.3 329 68.4
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 5.0e-132 474.9 328 70.1
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 6.5e-132 474.6 334 68.9
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 8.5e-132 474.2 335 69.6
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 6.1e-130 468.0 338 66.6
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 5.4e-126 454.9 337 65.3
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 2.0e-125 453.0 337 65.9
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 2.7e-125 452.6 329 66.6
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 3.5e-125 452.2 329 66.3
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 3.2e-123 445.7 331 65.6
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 3.2e-123 445.7 334 63.5
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 8.0e-122 441.0 330 65.5
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 8.8e-121 437.6 289 72.0
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 5.7e-120 434.9 330 65.2
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 1.7e-119 433.3 317 66.9
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 1.7e-119 433.3 333 64.6
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 1.7e-119 433.3 321 67.3
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.7e-119 432.2 334 65.0
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 1.2e-117 427.2 318 66.7
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 2.9e-116 422.5 377 57.3
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 3.7e-111 405.6 265 71.3
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 1.8e-110 403.3 261 74.7
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 7.1e-94 348.2 217 80.2
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 7.8e-93 344.7 385 49.4
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 6.6e-92 341.7 209 80.4
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 8.6e-92 341.3 338 51.2
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 9.5e-91 337.8 315 56.8
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 2.3e-89 333.2 345 52.8
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 3.1e-89 332.8 276 60.1
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 8.9e-89 331.3 349 50.7
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 1.5e-83 313.9 342 50.6
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 4.9e-79 298.9 406 42.4
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 4.2e-78 295.8 250 61.2
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.6e-77 293.9 192 70.3
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 2.7e-77 293.1 277 55.2
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 7.1e-62 241.9 333 40.2
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 6.7e-60 235.3 184 61.4
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 3.7e-58 229.6 155 68.4
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 8.4e-55 218.4 379 37.5
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 6.3e-50 202.2 144 65.3
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 1.1e-49 201.4 337 40.4
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 2.1e-45 187.2 134 67.9
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 3.5e-45 186.4 248 42.3
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 1.9e-43 180.6 155 57.4
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 2.0e-40 170.6 138 59.4
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 2.0e-40 170.6 138 59.4
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 6.9e-33 145.6 89 77.5
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 1.5e-32 144.4 109 68.8
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 5.5e-30 136.0 91 67.0
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 2.7e-29 133.7 152 47.4
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 3.0e-20 103.6 405 25.7
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 7.0e-17 92.4 67 65.7
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 2.0e-16 90.9 76 56.6
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 1.5e-14 84.7 67 62.7
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 6.8e-12 75.9 39 89.7
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 1.1e-09 68.6 59 59.3
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 9.1e-09 65.5 57 64.9
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.6e-08 64.7 71 45.1
DCAR_004803 Daucus carota HOM05D019807 ORTHO05D005566 9.5e-06 55.5 34 70.6


User provided reference genes

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