Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 4.3e-72 274.6 146 100.0
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 1.8e-30 136.3 92 84.8
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.9e-27 126.3 95 76.8
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 4.2e-27 125.2 95 76.8
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 4.2e-27 125.2 95 76.8
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.7e-26 122.5 95 74.7
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 4.7e-26 121.7 92 77.2
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 2.7e-18 95.9 98 62.2
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 1.1e-14 84.0 95 58.9
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 4.1e-14 82.0 98 54.1
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 4.1e-14 82.0 98 54.1
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 5.3e-14 81.6 89 55.1
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 7.0e-14 81.3 89 55.1
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.2e-13 80.5 90 53.3
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.2e-13 80.5 90 53.3
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 1.6e-13 80.1 89 58.4
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 1.6e-13 80.1 89 51.7
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 2.6e-13 79.3 90 55.6
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 7.7e-13 77.8 91 51.6
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.3e-12 77.0 91 49.5
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.7e-12 76.6 89 56.2
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 2.9e-12 75.9 99 55.6
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 3.8e-12 75.5 91 51.6
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.8e-12 75.5 91 51.6
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 3.8e-12 75.5 89 49.4
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 6.5e-12 74.7 92 54.3
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 8.5e-12 74.3 89 51.7
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 1.5e-11 73.6 90 53.3
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.9e-11 73.2 92 53.3
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 2.5e-11 72.8 90 51.1
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 3.2e-11 72.4 91 51.6
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 4.2e-11 72.0 89 56.2
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 4.2e-11 72.0 90 48.9
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 5.5e-11 71.6 95 50.5
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 7.2e-11 71.2 91 47.3
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 9.4e-11 70.9 98 48.0
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 1.2e-10 70.5 89 48.3
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 1.2e-10 70.5 90 47.8
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 1.6e-10 70.1 91 49.5
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.6e-10 70.1 125 44.0
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 1.6e-10 70.1 84 51.2
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 2.1e-10 69.7 84 46.4
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 2.1e-10 69.7 91 51.6
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 6.1e-10 68.2 91 49.5
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 8.0e-10 67.8 92 45.7
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 1.0e-09 67.4 92 48.9
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.0e-09 67.4 85 47.1
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.4e-09 67.0 84 45.2
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 1.4e-09 67.0 91 47.3
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.4e-09 67.0 91 50.5
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 1.8e-09 66.6 90 46.7
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 2.3e-09 66.2 75 54.7
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 2.3e-09 66.2 90 50.0
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 2.3e-09 66.2 91 49.5
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 3.0e-09 65.9 125 43.2
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 4.0e-09 65.5 84 51.2
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 4.0e-09 65.5 93 51.6
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 4.0e-09 65.5 76 59.2
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 5.2e-09 65.1 87 51.7
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 5.2e-09 65.1 71 57.7
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 5.2e-09 65.1 69 58.0
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 6.7e-09 64.7 71 57.7
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 6.7e-09 64.7 71 57.7
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 6.7e-09 64.7 71 57.7
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 6.7e-09 64.7 65 61.5
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 6.7e-09 64.7 63 61.9
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 6.7e-09 64.7 93 48.4
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 8.8e-09 64.3 90 47.8
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 1.2e-08 63.9 75 57.3
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 1.5e-08 63.5 115 44.3
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 2.0e-08 63.2 74 55.4
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 2.0e-08 63.2 99 45.5
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 2.6e-08 62.8 75 57.3
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 2.6e-08 62.8 92 45.7
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 3.3e-08 62.4 92 47.8
Sed0022207 Sechium edule HOM05D006325 ORTHO05D007878 3.3e-08 62.4 88 52.3
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 4.4e-08 62.0 73 56.2
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 4.4e-08 62.0 73 56.2
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 4.4e-08 62.0 73 56.2
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 4.4e-08 62.0 46 71.7
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 4.4e-08 62.0 66 63.6
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 4.4e-08 62.0 108 43.5
Manes.15G124400 Manihot esculenta HOM05D006325 ORTHO05D007878 4.4e-08 62.0 87 47.1
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 4.4e-08 62.0 75 56.0
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 4.4e-08 62.0 89 49.4
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 5.7e-08 61.6 64 54.7
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 9.7e-08 60.8 91 48.4
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 1.3e-07 60.5 50 66.0
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 1.3e-07 60.5 90 51.1
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 1.3e-07 60.5 79 51.9
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 1.7e-07 60.1 97 42.3
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 1.7e-07 60.1 91 44.0
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 2.2e-07 59.7 59 61.0
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 2.8e-07 59.3 90 43.3
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.7e-07 58.9 91 41.8
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 4.8e-07 58.5 105 43.8
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 4.8e-07 58.5 52 63.5
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 4.8e-07 58.5 52 63.5
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 6.3e-07 58.2 91 44.0
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 1.1e-06 57.4 39 71.8
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 1.4e-06 57.0 57 56.1
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 1.4e-06 57.0 52 61.5
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 1.4e-06 57.0 55 56.4
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 1.8e-06 56.6 90 38.9
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 2.4e-06 56.2 82 43.9
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 2.4e-06 56.2 98 41.8
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 3.1e-06 55.8 52 59.6
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 4.1e-06 55.5 91 42.9
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 5.3e-06 55.1 93 40.9
COL.COLO4_31021 Corchorus olitorius HOM05D006325 ORTHO05D007878 5.3e-06 55.1 91 45.1
Gohir.A06G139600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 7.0e-06 54.7 92 43.5


User provided reference genes

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