Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0014351 Rosa chinensis HOM05D025617 ORTHO05D018334 3.0e-79 298.5 158 100.0
FAN07G0575 Fragaria x ananassa HOM05D025617 ORTHO05D018334 2.0e-14 83.2 181 37.6
MD03G1181300 Malus domestica HOM05D025617 ORTHO05D018334 4.6e-11 72.0 86 50.0
RcHm_v2.0_Chr5g0040431 Rosa chinensis HOM05D000021 ORTHO05D000010 7.8e-11 71.2 83 57.8
Gohir.D11G308300 Gossypium hirsutum HOM05D000071 ORTHO05D000029 2.3e-10 69.7 152 36.8
Hma1.2p1_1821F.1_g304230 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 3.0e-10 69.3 168 32.7
RcHm_v2.0_Chr2g0115751 Rosa chinensis HOM05D000021 ORTHO05D018334 3.0e-10 69.3 117 41.0
CAN.G866.1 Capsicum annuum HOM05D000021 ORTHO05D000010 3.9e-10 68.9 127 40.9
Prupe.4G213400 Prunus persica HOM05D000021 ORTHO05D000010 3.9e-10 68.9 75 56.0
MD05G1075800 Malus domestica HOM05D000021 ORTHO05D000010 3.3e-09 65.9 109 39.4
MD10G1277300 Malus domestica HOM05D000021 ORTHO05D011302 3.3e-09 65.9 77 55.8
FAN16G0633 Fragaria x ananassa HOM05D000021 ORTHO05D000010 7.3e-09 64.7 75 49.3
FAN21G1852 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.6e-08 63.5 49 73.5
FAN16G1847 Fragaria x ananassa HOM05D000021 ORTHO05D000010 2.1e-08 63.2 65 58.5
QL93p2015_0025 Quercus lobata HOM05D000311 ORTHO05D000183 3.6e-08 62.4 163 28.2
RcHm_v2.0_Chr1g0340591 Rosa chinensis HOM05D000053 ORTHO05D000035 6.2e-08 61.6 162 34.0
RcHm_v2.0_Chr5g0011271 Rosa chinensis HOM05D000021 ORTHO05D000010 6.2e-08 61.6 65 60.0
ECA238G0017 Erigeron canadensis HOM05D000071 ORTHO05D003088 1.1e-07 60.8 179 29.1
MBI05_g43885_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D016322 1.8e-07 60.1 165 35.2
RcHm_v2.0_Chr5g0059161 Rosa chinensis HOM05D000021 ORTHO05D000010 1.8e-07 60.1 64 60.9
Eucgr.C03758 Eucalyptus grandis HOM05D000021 ORTHO05D000010 2.3e-07 59.7 152 32.9
CAN.G342.5 Capsicum annuum HOM05D001708 ORTHO05D016894 3.1e-07 59.3 142 37.3
HanXRQChr03g0066231 Helianthus annuus HOM05D000071 ORTHO05D000029 3.1e-07 59.3 174 30.5
Haze_00086 Corylus avellana HOM05D000071 ORTHO05D000029 4.0e-07 58.9 167 31.1
Phvul.004G115600 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 4.0e-07 58.9 175 30.9
RcHm_v2.0_Chr1g0340351 Rosa chinensis HOM05D000053 ORTHO05D000035 4.0e-07 58.9 173 30.6
FAN06G3346 Fragaria x ananassa HOM05D000071 ORTHO05D000029 5.2e-07 58.5 186 31.7
MD05G1297700 Malus domestica HOM05D000021 ORTHO05D000010 5.2e-07 58.5 62 58.1
RcHm_v2.0_Chr1g0347571 Rosa chinensis HOM05D000053 ORTHO05D000035 5.2e-07 58.5 158 31.0
TWI09G0251 Tripterygium wilfordii HOM05D000021 ORTHO05D018334 5.2e-07 58.5 172 33.7
Gohir.D05G376232 Gossypium hirsutum HOM05D000053 ORTHO05D000035 6.8e-07 58.2 163 27.6
Medtr8g077105 Medicago truncatula HOM05D000311 ORTHO05D000183 6.8e-07 58.2 162 32.1
Medtr8g469600 Medicago truncatula HOM05D000021 ORTHO05D000010 6.8e-07 58.2 162 27.8
BcaC02g08373 Brassica carinata HOM05D000053 ORTHO05D000035 8.9e-07 57.8 152 35.5
TPR.G11490 Trifolium pratense HOM05D000021 ORTHO05D000010 8.9e-07 57.8 160 29.4
Cc11_g07430 Coffea canephora HOM05D000071 ORTHO05D000029 1.2e-06 57.4 152 32.2
Glyma.09G145600 Glycine max HOM05D000053 ORTHO05D000035 1.2e-06 57.4 152 34.2
Haze_12930 Corylus avellana HOM05D013352 ORTHO05D013588 1.5e-06 57.0 134 32.8
Gorai.007G329300 Gossypium raimondii HOM05D000053 ORTHO05D000035 1.5e-06 57.0 159 27.0
SEGI_37256 Sequoiadendron giganteum HOM05D000071 ORTHO05D001565 1.5e-06 57.0 136 36.0
TWI56G0176 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 1.5e-06 57.0 71 49.3
Gohir.D05G382000 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.0e-06 56.6 160 33.8
Potri.012G007800 Populus trichocarpa HOM05D000053 ORTHO05D000001 2.0e-06 56.6 157 33.1
Aqoxy4G02456 Aquilegia oxysepala HOM05D000053 ORTHO05D000448 2.6e-06 56.2 174 32.8
Glyma.16G173900 Glycine max HOM05D000071 ORTHO05D000029 2.6e-06 56.2 147 31.3
QL12p009182 Quercus lobata HOM05D000053 ORTHO05D000035 2.6e-06 56.2 158 31.0
Sabra12G0005800 Salix brachista HOM05D000482 ORTHO05D000349 2.6e-06 56.2 141 32.6
GSVIVG01018463001 Vitis vinifera HOM05D000071 ORTHO05D000029 2.6e-06 56.2 160 33.1
BolC3t17501H Brassica oleracea HOM05D000053 ORTHO05D000035 3.4e-06 55.8 163 27.6
CAN.G525.54 Capsicum annuum HOM05D000021 ORTHO05D000010 3.4e-06 55.8 117 36.8
CARHR094720 Cardamine hirsuta HOM05D001708 ORTHO05D001649 3.4e-06 55.8 147 28.6
Cfa000855 Carpinus fangiana HOM05D000071 ORTHO05D000029 3.4e-06 55.8 112 37.5
FAN22G1002 Fragaria x ananassa HOM05D025617 ORTHO05D018334 3.4e-06 55.8 180 32.2
RcHm_v2.0_Chr5g0043361 Rosa chinensis HOM05D000053 ORTHO05D000035 3.4e-06 55.8 86 37.2
CSS0014002 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 4.4e-06 55.5 93 34.4
Haze_23091 Corylus avellana HOM05D001506 ORTHO05D000455 4.4e-06 55.5 137 36.5
Peaxi162Scf00299g00016 Petunia axillaris HOM05D000053 ORTHO05D000035 4.4e-06 55.5 190 28.9
Potri.012G027400 Populus trichocarpa HOM05D000053 ORTHO05D000035 4.4e-06 55.5 156 29.5
RcHm_v2.0_Chr2g0114021 Rosa chinensis HOM05D000021 ORTHO05D000010 4.4e-06 55.5 85 43.5
Sabra12G0009100 Salix brachista HOM05D000053 ORTHO05D000035 4.4e-06 55.5 126 34.9
Ah.12g057020 Amaranthus hybridus HOM05D000053 ORTHO05D000035 5.8e-06 55.1 85 40.0
AT3G25010 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 5.8e-06 55.1 145 31.7
AUR62032302 Chenopodium quinoa HOM05D000053 ORTHO05D000035 5.8e-06 55.1 87 39.1
Migut.D02367 Erythranthe guttata HOM05D000517 ORTHO05D003374 5.8e-06 55.1 163 34.4
Gohir.D01G041300 Gossypium hirsutum HOM05D000021 ORTHO05D000010 5.8e-06 55.1 119 37.0
Oeu003625.2 Olea europaea HOM05D000517 ORTHO05D000751 5.8e-06 55.1 122 34.4
Ah.12g057030 Amaranthus hybridus HOM05D000053 ORTHO05D000035 7.6e-06 54.7 86 39.5
Gorai.007G338400 Gossypium raimondii HOM05D000071 ORTHO05D000029 7.6e-06 54.7 90 41.1
QL09p052225 Quercus lobata HOM05D000071 ORTHO05D000029 7.6e-06 54.7 169 31.4
TWI38G1216 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 7.6e-06 54.7 211 26.5
AL3G12670 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 9.9e-06 54.3 147 32.7
arahy.Tifrunner.gnm1.ann1.G5MJIA Arachis hypogaea HOM05D000053 ORTHO05D000448 9.9e-06 54.3 158 31.6
BolC8t52591H Brassica oleracea HOM05D000311 ORTHO05D000183 9.9e-06 54.3 119 35.3
CiPaw.01G038600 Carya illinoinensis HOM05D000021 ORTHO05D000010 9.9e-06 54.3 172 27.9
Ciclev10024901m.g Citrus clementina HOM05D000021 ORTHO05D000010 9.9e-06 54.3 63 50.8
Cc09_g06850 Coffea canephora HOM05D000021 ORTHO05D152980 9.9e-06 54.3 151 28.5
Duzib128G0728 Durio zibethinus HOM05D000053 ORTHO05D000035 9.9e-06 54.3 85 41.2
Potri.012G010445 Populus trichocarpa HOM05D000053 ORTHO05D000035 9.9e-06 54.3 120 36.7
VMungo0464G1923 Vigna mungo HOM05D000071 ORTHO05D000029 9.9e-06 54.3 100 35.0


User provided reference genes

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