Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0014141 Rosa chinensis HOM05D007839 ORTHO05D009924 3.3e-133 478.4 244 100.0
FAN25G1788 Fragaria x ananassa HOM05D007839 ORTHO05D009924 1.1e-99 367.1 247 76.9
FvH4_3g05560 Fragaria vesca HOM05D007839 ORTHO05D009924 3.2e-96 355.5 247 75.7
FAN16G2540 Fragaria x ananassa HOM05D000499 ORTHO05D006980 3.9e-94 348.6 247 75.7
FAN11G2724 Fragaria x ananassa HOM05D000499 ORTHO05D006980 1.3e-92 343.6 234 77.4
RcHm_v2.0_Chr5g0014111 Rosa chinensis HOM05D007839 ORTHO05D009924 4.1e-75 285.4 173 85.0
Prupe.4G080500 Prunus persica HOM05D007839 ORTHO05D009924 2.0e-69 266.5 247 59.5
MD10G1262200 Malus domestica HOM05D007839 ORTHO05D009924 1.2e-66 257.3 245 58.0
MD05G1283900 Malus domestica HOM05D007839 ORTHO05D009924 1.4e-64 250.4 242 59.9
Potri.004G064800 Populus trichocarpa HOM05D007839 ORTHO05D009924 4.1e-51 205.7 242 49.2
Sabra04G0043100 Salix brachista HOM05D007839 ORTHO05D009924 9.1e-51 204.5 243 50.2
TWI73G0350 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 4.5e-50 202.2 244 45.9
Ciclev10017838m.g Citrus clementina HOM05D007839 ORTHO05D009924 8.5e-49 198.0 199 54.8
Manes.17G069900 Manihot esculenta HOM05D007839 ORTHO05D009924 8.5e-49 198.0 241 49.0
Haze_05595 Corylus avellana HOM05D007839 ORTHO05D009924 2.1e-47 193.4 246 48.0
Atru.chr10.1228 Acer truncatum HOM05D007839 ORTHO05D009924 6.1e-47 191.8 248 46.0
TWI73G0663 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 1.0e-46 191.0 242 46.7
TWI09G0569 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 1.8e-46 190.3 251 43.4
QL05p058124 Quercus lobata HOM05D007839 ORTHO05D009924 3.0e-46 189.5 231 46.8
Sabra11G0067200 Salix brachista HOM05D007839 ORTHO05D009924 4.0e-46 189.1 244 43.4
Cfa000944 Carpinus fangiana HOM05D007839 ORTHO05D009924 8.8e-46 188.0 227 50.7
CSS0048482 Camellia sinensis var. sinensis HOM05D007839 ORTHO05D009924 1.5e-45 187.2 227 49.3
CANSAT35G0562 Cannabis sativa HOM05D007839 ORTHO05D009924 1.5e-45 187.2 240 44.6
QL05p058196 Quercus lobata HOM05D007839 ORTHO05D009924 2.4e-43 179.9 245 44.9
CiPaw.09G123500 Carya illinoinensis HOM05D007839 ORTHO05D009924 1.9e-40 170.2 212 48.1
Cpa.g.sc166.6 Carica papaya HOM05D007839 ORTHO05D009924 2.5e-40 169.9 246 43.1
BcaC02g11515 Brassica carinata HOM05D007839 ORTHO05D009924 5.7e-37 158.7 267 40.4
Sopen02g019500 Solanum pennellii HOM05D007839 ORTHO05D009924 5.7e-37 158.7 202 45.5
HPP92_020033 Vanilla planifolia HOM05D007839 ORTHO05D009924 5.7e-37 158.7 234 41.0
BcaB02g09533 Brassica carinata HOM05D007839 ORTHO05D009924 7.5e-37 158.3 211 44.1
CARHR128620 Cardamine hirsuta HOM05D007839 ORTHO05D009924 9.8e-37 157.9 276 39.5
THA.LOC104814297 Tarenaya hassleriana HOM05D007839 ORTHO05D009924 1.3e-36 157.5 277 35.7
Sp4g16790 Schrenkiella parvula HOM05D007839 ORTHO05D009924 2.2e-36 156.8 208 45.7
Aa31LG10G6870 Aethionema arabicum HOM05D007839 ORTHO05D009924 6.3e-36 155.2 265 40.8
ClCG01G024620 Citrullus lanatus HOM05D007839 ORTHO05D009924 6.3e-36 155.2 244 38.5
Peaxi162Scf00008g02916 Petunia axillaris HOM05D007839 ORTHO05D009924 1.1e-35 154.5 230 43.5
AT2G34530 Arabidopsis thaliana HOM05D007839 ORTHO05D009924 1.8e-35 153.7 276 38.4
Duzib235G0881 Durio zibethinus HOM05D007839 ORTHO05D009924 2.4e-35 153.3 243 42.8
AL4G30500 Arabidopsis lyrata HOM05D007839 ORTHO05D009924 4.1e-35 152.5 273 38.5
Sed0023114 Sechium edule HOM05D007839 ORTHO05D009924 7.0e-35 151.8 241 39.4
MBI07_g43266_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 1.2e-34 151.0 240 36.2
BraA05t20061Z Brassica rapa HOM05D007839 ORTHO05D009924 2.0e-34 150.2 270 39.3
BolC4t23033H Brassica oleracea HOM05D007839 ORTHO05D009924 4.5e-34 149.1 267 39.7
MELO3C007133.2 Cucumis melo HOM05D007839 ORTHO05D009924 6.6e-33 145.2 246 37.8
Gohir.D06G142600 Gossypium hirsutum HOM05D007839 ORTHO05D009924 1.1e-32 144.4 241 39.8
CsaV3_6G051740 Cucumis sativus L. HOM05D007839 ORTHO05D009924 1.9e-32 143.7 247 36.4
Gohir.A06G137400 Gossypium hirsutum HOM05D007839 ORTHO05D009924 4.3e-32 142.5 241 39.4
Gorai.010G166400 Gossypium raimondii HOM05D007839 ORTHO05D009924 4.3e-32 142.5 241 39.4
Thecc.06G150800 Theobroma cacao HOM05D007839 ORTHO05D009924 2.8e-31 139.8 244 40.2
C04p63860 Brassica napus HOM05D007839 ORTHO05D009924 4.7e-31 139.0 203 42.4
BraA04t18149Z Brassica rapa HOM05D007839 ORTHO05D009924 4.7e-31 139.0 203 42.4
A05p11150 Brassica napus HOM05D007839 ORTHO05D009924 8.0e-31 138.3 199 44.2
BcaB06g28780 Brassica carinata HOM05D007839 ORTHO05D009924 1.0e-30 137.9 269 36.4
C04p14500 Brassica napus HOM05D007839 ORTHO05D009924 2.3e-30 136.7 196 44.9
COL.COLO4_31073 Corchorus olitorius HOM05D007839 ORTHO05D009924 2.3e-30 136.7 197 41.1
CiPaw.09G123700 Carya illinoinensis HOM05D007839 ORTHO05D009924 5.2e-30 135.6 142 52.8
BolC4t27853H Brassica oleracea HOM05D007839 ORTHO05D009924 8.9e-30 134.8 132 54.5
Nitab4.5_0000869g0080 Nicotiana tabacum HOM05D007839 ORTHO05D009924 1.7e-28 130.6 202 41.6
Nitab4.5_0009201g0030 Nicotiana tabacum HOM05D007839 ORTHO05D009924 1.7e-28 130.6 198 40.9
PGSC0003DMG400021096 Solanum tuberosum HOM05D007839 ORTHO05D009924 2.9e-28 129.8 127 54.3
GSVIVG01021451001 Vitis vinifera HOM05D007839 ORTHO05D009924 7.0e-27 125.2 212 37.7
arahy.Tifrunner.gnm1.ann1.EDFF2E Arachis hypogaea HOM05D007839 ORTHO05D009924 1.3e-25 120.9 251 37.8
GSVIVG01021458001 Vitis vinifera HOM05D007839 ORTHO05D009924 1.3e-25 120.9 127 53.5
Thhalv10017730m.g Eutrema salsugineum HOM05D007839 ORTHO05D009924 5.0e-25 119.0 198 40.9
Carub.0004s1620 Capsella rubella HOM05D007839 ORTHO05D009924 2.3e-22 110.2 278 33.8
Gorai.010G238500 Gossypium raimondii HOM05D007839 ORTHO05D009924 5.2e-22 109.0 234 37.6
Medtr2g019410 Medicago truncatula HOM05D007839 ORTHO05D009924 5.8e-21 105.5 196 37.8
MBI07_g37165_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 1.3e-20 104.4 142 40.8
CANSAT35G0336 Cannabis sativa HOM05D007839 ORTHO05D009924 3.7e-20 102.8 241 32.4
Haze_05600 Corylus avellana HOM05D007839 ORTHO05D009924 6.0e-18 95.5 313 30.4
A04p26450 Brassica napus HOM05D007839 ORTHO05D009924 7.8e-18 95.1 142 44.4
Glyma.15G094000 Glycine max HOM05D007839 ORTHO05D009924 3.9e-17 92.8 167 40.7
TPR.G11372 Trifolium pratense HOM05D007839 ORTHO05D009924 3.9e-17 92.8 130 46.2
Gohir.D06G204450 Gossypium hirsutum HOM05D007839 ORTHO05D009924 1.9e-16 90.5 193 38.3
Phvul.006G164900 Phaseolus vulgaris HOM05D007839 ORTHO05D009924 5.6e-16 89.0 169 39.1
MBI07_g35861_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 2.8e-15 86.7 109 41.3
ATR1091G096 Amborella trichopoda HOM05D000884 ORTHO05D002127 1.8e-14 84.0 141 36.9
ATR1091G017 Amborella trichopoda HOM05D007839 ORTHO05D009924 1.5e-13 80.9 267 28.8
Ciclev10016244m.g Citrus clementina HOM05D008587 ORTHO05D010485 1.1e-11 74.7 89 48.3
ATR1091G011 Amborella trichopoda HOM05D007839 ORTHO05D009924 4.1e-11 72.8 106 42.5
Sabra04G0043200 Salix brachista HOM05D008587 ORTHO05D010485 4.1e-11 72.8 147 35.4
Potri.004G064900 Populus trichocarpa HOM05D008587 ORTHO05D010485 2.7e-10 70.1 103 42.7
QL05p058141 Quercus lobata HOM05D008587 ORTHO05D010485 1.7e-09 67.4 147 37.4
CANSAT35G1906 Cannabis sativa HOM05D007839 ORTHO05D009924 3.9e-09 66.2 250 25.6
Atru.chr10.1227 Acer truncatum HOM05D008587 ORTHO05D010485 6.6e-09 65.5 89 43.8
Cpa.g.sc166.5 Carica papaya HOM05D008587 ORTHO05D010485 3.3e-08 63.2 203 31.0
Manes.17G070000 Manihot esculenta HOM05D008587 ORTHO05D010485 4.3e-08 62.8 147 35.4
ATR1091G114 Amborella trichopoda HOM05D007839 ORTHO05D009924 2.1e-07 60.5 118 38.1
arahy.Tifrunner.gnm1.ann1.9V8GBM Arachis hypogaea HOM05D007839 ORTHO05D009924 3.6e-07 59.7 161 33.5
QL05p058118 Quercus lobata HOM05D008587 ORTHO05D010485 3.6e-07 59.7 143 39.2
QL05p058149 Quercus lobata HOM05D008587 ORTHO05D010485 3.6e-07 59.7 107 39.3
THA.LOC104814298 Tarenaya hassleriana HOM05D008587 ORTHO05D010485 6.2e-07 58.9 89 42.7
BcaC02g11516 Brassica carinata HOM05D008587 ORTHO05D010485 1.1e-06 58.2 120 36.7
A05p11130 Brassica napus HOM05D008587 ORTHO05D010485 1.1e-06 58.2 88 43.2
C04p14490 Brassica napus HOM05D008587 ORTHO05D010485 1.1e-06 58.2 120 36.7
BolC4t23032H Brassica oleracea HOM05D008587 ORTHO05D010485 1.1e-06 58.2 120 36.7
BraA05t20060Z Brassica rapa HOM05D008587 ORTHO05D010485 1.1e-06 58.2 88 43.2
AL4G30510 Arabidopsis lyrata HOM05D008587 ORTHO05D010485 1.8e-06 57.4 88 42.0
BcaB02g09532 Brassica carinata HOM05D008587 ORTHO05D010485 1.8e-06 57.4 122 36.9
Sp4g16800 Schrenkiella parvula HOM05D008587 ORTHO05D010485 2.4e-06 57.0 88 42.0
Thhalv10017034m.g Eutrema salsugineum HOM05D008587 ORTHO05D010485 3.1e-06 56.6 120 36.7
Carub.0004s1621 Capsella rubella HOM05D008587 ORTHO05D010485 4.0e-06 56.2 88 40.9
Prupe.4G080600 Prunus persica HOM05D008587 ORTHO05D010485 5.2e-06 55.8 115 39.1
AT2G34540 Arabidopsis thaliana HOM05D008587 ORTHO05D010485 6.8e-06 55.5 120 35.8
CARHR128630 Cardamine hirsuta HOM05D008587 ORTHO05D010485 8.9e-06 55.1 141 33.3
Cfa000946 Carpinus fangiana HOM05D008587 ORTHO05D010485 8.9e-06 55.1 97 40.2


User provided reference genes

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